Wall clock time and date at job start Fri Apr 10 2020 18:27:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13595 * 1 3 3 C 1.43208 * 179.97438 * 2 1 4 4 C 1.40131 * 120.88778 * 39.22263 * 3 2 1 5 5 C 1.37870 * 119.16375 * 179.97438 * 4 3 2 6 6 N 1.31966 * 121.00438 * 0.02963 * 5 4 3 7 7 C 1.32363 * 121.96918 * 359.96920 * 6 5 4 8 8 N 1.39030 * 119.64441 * 180.02562 * 7 6 5 9 9 C 1.46894 * 110.99486 * 0.02562 * 8 7 6 10 10 C 1.53243 * 109.33846 * 187.25355 * 9 8 7 11 11 N 1.47082 * 108.51900 * 306.16925 * 10 9 8 12 12 S 1.65608 * 120.87917 * 231.18699 * 11 10 9 13 13 O 1.42100 * 106.40059 * 203.54080 * 12 11 10 14 14 O 1.42096 * 106.40050 * 336.46113 * 12 11 10 15 15 C 1.76202 * 107.21643 * 90.00137 * 12 11 10 16 16 H 1.07996 * 120.00069 * 359.97438 * 15 12 11 17 17 C 1.37877 * 119.99696 * 180.02562 * 15 12 11 18 18 N 1.31516 * 120.00169 * 359.97438 * 17 15 12 19 19 Si 1.86797 * 120.00014 * 179.97438 * 17 15 12 20 20 H 1.48504 * 109.47375 * 89.99544 * 19 17 15 21 21 H 1.48497 * 109.47220 * 209.99725 * 19 17 15 22 22 H 1.48508 * 109.47201 * 329.99615 * 19 17 15 23 23 C 1.47077 * 118.24009 * 51.45654 * 11 10 9 24 24 C 1.46902 * 110.99981 * 124.30085 * 8 7 6 25 25 C 1.39030 * 120.71535 * 0.27732 * 7 6 5 26 26 H 1.07997 * 120.42184 * 0.02562 * 4 3 2 27 27 H 1.08001 * 119.49790 * 180.02562 * 5 4 3 28 28 H 1.08995 * 109.49706 * 67.29456 * 9 8 7 29 29 H 1.09000 * 109.49576 * 307.20842 * 9 8 7 30 30 H 1.09002 * 109.63078 * 186.46427 * 10 9 8 31 31 H 1.08992 * 109.63090 * 65.87499 * 10 9 8 32 32 H 0.96999 * 119.99975 * 180.02562 * 18 17 15 33 33 H 1.09000 * 109.62570 * 68.25311 * 23 11 10 34 34 H 1.08993 * 109.63065 * 188.83160 * 23 11 10 35 35 H 1.09004 * 109.49201 * 292.71119 * 24 8 7 36 36 H 1.09003 * 109.48994 * 52.76412 * 24 8 7 37 37 H 1.08003 * 120.53848 * 179.69910 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2878 -0.9307 -0.7604 5 6 4.6659 -0.8976 -0.7346 6 7 5.3109 -0.0056 -0.0067 7 6 4.6738 0.8931 0.7271 8 7 5.4020 1.8110 1.4755 9 6 6.8460 1.6028 1.3036 10 6 7.6086 2.5078 2.2771 11 7 7.1524 3.8925 2.0826 12 16 8.2386 5.1199 1.8453 13 8 7.5834 6.3174 2.2398 14 8 9.4670 4.6834 2.4108 15 6 8.5084 5.2491 0.1089 16 1 7.9935 4.5841 -0.5686 17 6 9.3777 6.1986 -0.3849 18 7 10.0050 7.0082 0.4401 19 14 9.6643 6.3353 -2.2257 20 1 8.6853 7.2870 -2.8098 21 1 11.0428 6.8268 -2.4769 22 1 9.4924 5.0006 -2.8538 23 6 5.7063 4.1592 2.1104 24 6 5.0187 3.1882 1.1372 25 6 3.2844 0.9258 0.7616 26 1 2.7697 -1.6646 -1.3598 27 1 5.2260 -1.6125 -1.3190 28 1 7.1297 1.8486 0.2804 29 1 7.0901 0.5605 1.5089 30 1 8.6779 2.4430 2.0761 31 1 7.4062 2.1963 3.3018 32 1 10.6163 7.6765 0.0927 33 1 5.3246 4.0033 3.1194 34 1 5.5173 5.1865 1.7991 35 1 5.3282 3.4116 0.1162 36 1 3.9373 3.2958 1.2213 37 1 2.7675 1.6573 1.3652 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192961603.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:33 Heat of formation + Delta-G solvation = -23.566612 kcal Electronic energy + Delta-G solvation = -24688.419222 eV Core-core repulsion = 20977.975047 eV Total energy + Delta-G solvation = -3710.444175 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 322.089 amu Computer time = 1.75 seconds Orbital eigenvalues (eV) -41.78555 -39.52075 -37.80613 -37.45588 -36.13408 -35.71065 -35.11455 -33.78350 -32.09110 -31.19068 -28.24689 -27.36823 -26.12795 -24.47345 -23.61978 -21.97107 -20.62084 -20.06826 -19.10503 -18.30378 -17.72090 -17.17473 -16.96057 -16.63831 -16.59781 -16.13192 -16.00256 -15.48002 -15.30707 -15.18254 -15.12017 -14.75805 -14.16820 -14.10796 -14.02982 -13.86187 -13.52005 -13.28488 -13.08943 -13.01378 -12.79223 -12.60130 -12.48299 -12.31563 -12.19369 -12.16707 -11.72052 -11.24869 -11.12439 -10.92338 -10.79470 -10.56514 -9.82860 -9.11049 -8.73711 -7.47290 -0.36510 0.11736 0.30106 1.33651 1.33966 1.45746 1.49798 1.90670 2.20020 2.37324 2.58475 2.66092 2.83380 2.93441 3.49355 3.79295 3.83245 3.89552 3.96822 4.01673 4.20380 4.23767 4.31619 4.37430 4.52033 4.54696 4.64278 4.71703 4.73717 4.88199 4.94203 5.05356 5.11759 5.14207 5.30962 5.44797 5.63850 5.90888 5.93441 6.12479 6.28225 6.79363 6.99191 8.21293 Molecular weight = 322.09amu Principal moments of inertia in cm(-1) A = 0.017710 B = 0.003581 C = 0.003375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1580.607392 B = 7817.821772 C = 8293.126852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.442 5.442 2 C 0.281 3.719 3 C 0.036 3.964 4 C -0.142 4.142 5 C 0.133 3.867 6 N -0.524 5.524 7 C 0.306 3.694 8 N -0.474 5.474 9 C 0.066 3.934 10 C 0.122 3.878 11 N -1.012 6.012 12 S 2.719 3.281 13 O -1.038 7.038 14 O -1.039 7.039 15 C -1.036 5.036 16 H 0.115 0.885 17 C 0.072 3.928 18 N -0.894 5.894 19 Si 0.986 3.014 20 H -0.255 1.255 21 H -0.263 1.263 22 H -0.249 1.249 23 C 0.123 3.877 24 C 0.049 3.951 25 C -0.140 4.140 26 H 0.174 0.826 27 H 0.197 0.803 28 H 0.045 0.955 29 H 0.110 0.890 30 H 0.083 0.917 31 H 0.085 0.915 32 H 0.299 0.701 33 H 0.091 0.909 34 H 0.088 0.912 35 H 0.047 0.953 36 H 0.124 0.876 37 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.934 -16.326 -4.323 20.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.117 5.117 2 C -0.035 4.035 3 C 0.025 3.975 4 C -0.166 4.166 5 C -0.024 4.024 6 N -0.239 5.239 7 C 0.074 3.926 8 N -0.191 5.191 9 C -0.063 4.063 10 C -0.003 4.003 11 N -0.851 5.851 12 S 2.821 3.179 13 O -1.028 7.028 14 O -1.030 7.030 15 C -1.170 5.170 16 H 0.133 0.867 17 C -0.141 4.141 18 N -0.526 5.526 19 Si 0.804 3.196 20 H -0.179 1.179 21 H -0.188 1.188 22 H -0.172 1.172 23 C -0.003 4.003 24 C -0.078 4.078 25 C -0.165 4.165 26 H 0.191 0.809 27 H 0.214 0.786 28 H 0.063 0.937 29 H 0.128 0.872 30 H 0.101 0.899 31 H 0.103 0.897 32 H 0.109 0.891 33 H 0.109 0.891 34 H 0.106 0.894 35 H 0.066 0.934 36 H 0.142 0.858 37 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -12.338 -15.657 -2.989 20.157 hybrid contribution 0.100 0.440 -1.681 1.741 sum -12.239 -15.216 -4.670 20.078 Atomic orbital electron populations 1.81319 1.13001 1.08612 1.08801 1.25502 0.92286 0.92841 0.92850 1.16016 0.83934 0.97999 0.99555 1.22368 0.95307 0.99110 0.99778 1.23097 0.91562 0.94251 0.93516 1.67586 1.42460 1.06477 1.07384 1.19776 0.90007 0.93075 0.89695 1.59009 1.06750 1.03633 1.49674 1.22273 0.84701 1.00977 0.98310 1.21606 0.98733 0.79546 1.00454 1.57846 1.17554 1.20781 1.88923 1.00024 0.70849 0.70633 0.76352 1.93296 1.76581 1.47370 1.85599 1.93296 1.46042 1.82415 1.81213 1.30946 1.38030 1.28548 1.19426 0.86664 1.25962 0.90571 0.90967 1.06564 1.69986 1.24915 1.18118 1.39556 0.85187 0.78953 0.80312 0.75108 1.17867 1.18761 1.17229 1.21684 0.78535 0.99089 1.00987 1.22824 1.02326 0.84678 0.97971 1.21650 0.92638 1.01008 1.01213 0.80897 0.78643 0.93657 0.87226 0.89861 0.89677 0.89137 0.89083 0.89378 0.93441 0.85771 0.82351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -9.51 18.54 19.01 0.35 -9.16 16 2 C 0.28 4.62 15.40 88.33 1.36 5.98 16 3 C 0.04 0.49 5.75 -21.24 -0.12 0.37 16 4 C -0.14 -1.36 9.85 22.64 0.22 -1.13 16 5 C 0.13 1.57 11.16 84.59 0.94 2.51 16 6 N -0.52 -10.10 8.64 -193.47 -1.67 -11.77 16 7 C 0.31 6.11 6.40 133.04 0.85 6.96 16 8 N -0.47 -11.05 4.65 -700.14 -3.26 -14.31 16 9 C 0.07 1.75 4.82 86.39 0.42 2.17 16 10 C 0.12 3.92 6.53 86.35 0.56 4.49 16 11 N -1.01 -38.78 3.32 -511.34 -1.70 -40.48 16 12 S 2.72 142.95 4.98 -56.49 -0.28 142.67 16 13 O -1.04 -60.28 16.79 -128.00 -2.15 -62.43 16 14 O -1.04 -60.89 16.80 -128.00 -2.15 -63.04 16 15 C -1.04 -55.67 9.75 67.73 0.66 -55.01 16 16 H 0.12 5.61 7.81 -2.91 -0.02 5.59 16 17 C 0.07 3.95 5.46 84.65 0.46 4.41 16 18 N -0.89 -52.78 13.19 21.45 0.28 -52.49 16 19 Si 0.99 40.56 29.54 68.60 2.03 42.59 16 20 H -0.25 -9.87 7.11 99.48 0.71 -9.17 16 21 H -0.26 -10.26 7.11 99.48 0.71 -9.55 16 22 H -0.25 -9.58 7.11 99.48 0.71 -8.88 16 23 C 0.12 3.72 6.56 86.51 0.57 4.29 16 24 C 0.05 1.16 5.43 86.54 0.47 1.63 16 25 C -0.14 -2.17 8.91 22.79 0.20 -1.97 16 26 H 0.17 0.61 8.06 -2.91 -0.02 0.59 16 27 H 0.20 1.02 8.06 -2.91 -0.02 0.99 16 28 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 29 H 0.11 2.57 7.64 -2.39 -0.02 2.55 16 30 H 0.08 2.92 7.22 -2.39 -0.02 2.91 16 31 H 0.09 2.40 8.14 -2.39 -0.02 2.38 16 32 H 0.30 15.83 8.31 -92.71 -0.77 15.06 16 33 H 0.09 2.37 8.14 -2.39 -0.02 2.35 16 34 H 0.09 2.89 7.21 -2.39 -0.02 2.87 16 35 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 36 H 0.12 2.03 6.64 -2.39 -0.02 2.02 16 37 H 0.16 2.02 7.15 -2.91 -0.02 2.00 16 Total: -1.00 -78.62 334.46 -0.83 -79.45 By element: Atomic # 1 Polarization: 13.16 SS G_CDS: 1.11 Total: 14.27 kcal Atomic # 6 Polarization: -31.91 SS G_CDS: 6.60 Total: -25.30 kcal Atomic # 7 Polarization: -122.22 SS G_CDS: -5.99 Total: -128.21 kcal Atomic # 8 Polarization: -121.17 SS G_CDS: -4.30 Total: -125.47 kcal Atomic # 14 Polarization: 40.56 SS G_CDS: 2.03 Total: 42.59 kcal Atomic # 16 Polarization: 142.95 SS G_CDS: -0.28 Total: 142.67 kcal Total: -78.62 -0.83 -79.45 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192961603.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.886 kcal (2) G-P(sol) polarization free energy of solvation -78.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.75 seconds