Wall clock time and date at job start Fri Apr 10 2020 18:27:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00432 * 2 1 4 4 H 1.48493 * 109.47135 * 269.99686 * 3 2 1 5 5 H 1.48500 * 109.47010 * 29.99498 * 3 2 1 6 6 H 1.48502 * 109.47080 * 149.99511 * 3 2 1 7 7 C 1.37885 * 119.99618 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99627 * 180.02562 * 7 2 1 9 9 S 1.76201 * 119.99910 * 0.02562 * 7 2 1 10 10 O 1.42097 * 106.40335 * 71.36042 * 9 7 2 11 11 O 1.42098 * 106.40131 * 298.44135 * 9 7 2 12 12 N 1.65605 * 107.21533 * 184.89931 * 9 7 2 13 13 C 1.39885 * 120.00175 * 298.45872 * 12 9 7 14 14 C 1.38885 * 120.01144 * 133.81122 * 13 12 9 15 15 C 1.38071 * 119.99045 * 180.02562 * 14 13 12 16 16 C 1.38812 * 120.01036 * 0.27662 * 15 14 13 17 17 N 1.40394 * 119.99207 * 179.70317 * 16 15 14 18 18 C 1.34520 * 125.20481 * 359.68983 * 17 16 15 19 19 O 1.21403 * 125.79044 * 0.04270 * 18 17 16 20 20 C 1.47961 * 108.41656 * 179.91282 * 18 17 16 21 21 C 1.34348 * 106.78910 * 0.35506 * 20 18 17 22 22 C 1.34519 * 125.20708 * 180.02562 * 17 16 15 23 23 O 1.21408 * 125.78941 * 359.93010 * 22 17 16 24 24 C 1.38817 * 120.01663 * 359.44793 * 16 15 14 25 25 C 1.38071 * 120.00414 * 0.55033 * 24 16 15 26 26 H 0.97003 * 119.99380 * 0.02562 * 1 2 3 27 27 H 0.97002 * 119.99640 * 118.45530 * 12 9 7 28 28 H 1.07991 * 120.00133 * 359.97438 * 14 13 12 29 29 H 1.07998 * 119.99583 * 179.97438 * 15 14 13 30 30 H 1.07998 * 126.60890 * 180.14699 * 20 18 17 31 31 H 1.08006 * 126.60783 * 179.80150 * 21 20 18 32 32 H 1.07999 * 119.99554 * 180.25266 * 24 16 15 33 33 H 1.07999 * 120.00263 * 179.70373 * 25 24 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4969 2.0463 -1.4000 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4400 0.7002 7 6 2.0045 -1.1942 0.0005 8 1 3.0846 -1.1942 0.0010 9 16 1.1234 -2.7200 0.0005 10 8 0.5459 -2.8500 -1.2913 11 8 0.3601 -2.7426 1.1989 12 7 2.2431 -3.9326 0.1363 13 6 3.2183 -4.0981 -0.8527 14 6 4.5461 -4.2909 -0.4938 15 6 5.5084 -4.4537 -1.4704 16 6 5.1499 -4.4189 -2.8110 17 7 6.1297 -4.5782 -3.8038 18 6 7.4423 -4.7641 -3.5753 19 8 7.9717 -4.8223 -2.4843 20 6 8.1306 -4.8889 -4.8790 21 6 7.1889 -4.7625 -5.8288 22 6 5.9006 -4.5619 -5.1292 23 8 4.8200 -4.4092 -5.6611 24 6 3.8221 -4.2318 -3.1701 25 6 2.8592 -4.0690 -2.1941 26 1 -0.4849 0.8401 -0.0004 27 1 2.2227 -4.5281 0.9018 28 1 4.8258 -4.3128 0.5491 29 1 6.5409 -4.6033 -1.1913 30 1 9.1872 -5.0474 -5.0369 31 1 7.3425 -4.7999 -6.8972 32 1 3.5430 -4.2089 -4.2132 33 1 1.8269 -3.9188 -2.4736 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192982564.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:38 Heat of formation + Delta-G solvation = -67.460406 kcal Electronic energy + Delta-G solvation = -24281.101201 eV Core-core repulsion = 20400.627803 eV Total energy + Delta-G solvation = -3880.473398 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 322.050 amu Computer time = 2.10 seconds Orbital eigenvalues (eV) -42.81553 -39.03027 -39.00703 -36.51238 -35.46379 -35.00016 -34.12490 -33.17114 -32.59438 -30.73858 -27.96497 -26.19100 -25.75038 -23.31711 -23.01032 -21.07712 -20.39905 -19.14514 -18.19200 -17.74858 -17.15144 -16.99413 -16.42618 -16.25342 -16.01929 -15.04317 -14.68406 -14.56706 -14.34698 -14.29799 -13.98662 -13.96759 -13.56865 -13.17770 -13.04852 -12.84124 -12.08453 -11.57789 -11.41559 -11.29495 -11.23955 -10.90657 -10.65851 -10.63101 -10.50227 -10.44099 -10.27782 -10.10713 -9.62675 -9.29067 -8.89864 -8.74714 -7.69076 -6.75755 -5.38454 -0.33777 1.26848 1.61669 2.03574 2.14279 2.17041 2.65245 3.05416 3.11903 3.18741 3.38257 3.73248 3.99303 4.02126 4.49891 4.61643 4.74385 4.86567 5.02365 5.10821 5.17966 5.21942 5.47887 5.53139 5.70584 5.85429 6.15464 6.25801 6.41726 6.48320 6.58408 6.74996 6.83417 6.97079 7.13543 7.27468 7.37511 7.74414 7.91964 8.83439 10.18405 Molecular weight = 322.05amu Principal moments of inertia in cm(-1) A = 0.017186 B = 0.003906 C = 0.003702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1628.871149 B = 7167.548104 C = 7562.538649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.844 5.844 2 C 0.134 3.866 3 Si 0.922 3.078 4 H -0.266 1.266 5 H -0.274 1.274 6 H -0.262 1.262 7 C -1.014 5.014 8 H 0.104 0.896 9 S 2.704 3.296 10 O -0.998 6.998 11 O -0.993 6.993 12 N -1.075 6.075 13 C 0.177 3.823 14 C -0.125 4.125 15 C -0.120 4.120 16 C 0.093 3.907 17 N -0.525 5.525 18 C 0.538 3.462 19 O -0.446 6.446 20 C -0.138 4.138 21 C -0.134 4.134 22 C 0.535 3.465 23 O -0.438 6.438 24 C -0.112 4.112 25 C -0.127 4.127 26 H 0.292 0.708 27 H 0.413 0.587 28 H 0.134 0.866 29 H 0.151 0.849 30 H 0.186 0.814 31 H 0.187 0.813 32 H 0.153 0.847 33 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.571 -9.424 -9.582 21.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.473 5.473 2 C -0.084 4.084 3 Si 0.745 3.255 4 H -0.191 1.191 5 H -0.199 1.199 6 H -0.186 1.186 7 C -1.148 5.148 8 H 0.122 0.878 9 S 2.805 3.195 10 O -0.988 6.988 11 O -0.984 6.984 12 N -0.819 5.819 13 C 0.079 3.921 14 C -0.147 4.147 15 C -0.140 4.140 16 C 0.003 3.997 17 N -0.260 5.260 18 C 0.327 3.673 19 O -0.316 6.316 20 C -0.160 4.160 21 C -0.156 4.156 22 C 0.324 3.676 23 O -0.308 6.308 24 C -0.132 4.132 25 C -0.148 4.148 26 H 0.102 0.898 27 H 0.247 0.753 28 H 0.152 0.848 29 H 0.168 0.832 30 H 0.204 0.796 31 H 0.204 0.796 32 H 0.171 0.829 33 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 15.030 -9.316 -9.396 20.024 hybrid contribution 1.032 1.027 0.445 1.523 sum 16.062 -8.289 -8.951 20.169 Atomic orbital electron populations 1.69893 1.06742 1.30886 1.39785 1.24734 0.94491 1.00818 0.88374 0.86134 0.80183 0.79837 0.79302 1.19086 1.19858 1.18587 1.30400 1.06140 1.11111 1.67143 0.87773 1.00928 0.72015 0.73320 0.73191 1.93322 1.75943 1.87081 1.42423 1.93394 1.68795 1.87310 1.48876 1.54117 1.47308 1.49599 1.30906 1.17577 0.88438 0.97702 0.88346 1.21035 0.91007 1.02917 0.99755 1.21195 1.01448 1.01482 0.89911 1.17761 0.87520 1.07442 0.86993 1.44040 1.09319 1.64451 1.08207 1.19448 0.81351 0.75639 0.90824 1.90723 1.70148 1.42879 1.27900 1.24615 1.01919 0.98170 0.91288 1.24641 0.91426 0.97464 1.02056 1.19473 0.90551 0.76065 0.81497 1.90760 1.28006 1.41223 1.70842 1.21313 0.89860 1.00129 1.01855 1.21912 1.02429 0.99685 0.90807 0.89757 0.75327 0.84801 0.83185 0.79645 0.79595 0.82926 0.81521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 46. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -24.57 13.10 55.43 0.73 -23.85 16 2 C 0.13 3.74 5.46 -17.82 -0.10 3.64 16 3 Si 0.92 20.74 29.54 -169.99 -5.02 15.72 16 4 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 5 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 6 H -0.26 -5.72 7.11 56.52 0.40 -5.32 16 7 C -1.01 -27.91 9.61 30.60 0.29 -27.62 16 8 H 0.10 2.68 7.81 -52.48 -0.41 2.27 16 9 S 2.70 70.64 4.94 -107.50 -0.53 70.11 16 10 O -1.00 -27.90 15.15 -57.17 -0.87 -28.76 16 11 O -0.99 -28.60 17.91 -57.17 -1.02 -29.63 16 12 N -1.08 -21.53 5.77 32.44 0.19 -21.34 16 13 C 0.18 3.37 6.14 -83.70 -0.51 2.86 16 14 C -0.12 -2.03 9.96 -39.40 -0.39 -2.42 16 15 C -0.12 -1.87 9.34 -39.43 -0.37 -2.23 16 16 C 0.09 1.46 6.60 -83.51 -0.55 0.91 16 17 N -0.53 -6.70 2.87 -61.37 -0.18 -6.88 16 18 C 0.54 5.75 7.93 -12.39 -0.10 5.66 16 19 O -0.45 -5.81 15.02 5.45 0.08 -5.72 16 20 C -0.14 -0.75 11.15 -36.97 -0.41 -1.17 16 21 C -0.13 -0.76 11.15 -36.97 -0.41 -1.17 16 22 C 0.54 5.98 7.93 -12.39 -0.10 5.89 16 23 O -0.44 -6.18 15.02 5.45 0.08 -6.10 16 24 C -0.11 -1.94 9.34 -39.43 -0.37 -2.30 16 25 C -0.13 -2.48 9.22 -39.40 -0.36 -2.84 16 26 H 0.29 7.64 8.31 -40.82 -0.34 7.30 16 27 H 0.41 6.85 8.96 -34.47 -0.31 6.54 16 28 H 0.13 1.85 8.06 -52.49 -0.42 1.43 16 29 H 0.15 2.18 5.34 -52.49 -0.28 1.90 16 30 H 0.19 0.32 8.06 -52.49 -0.42 -0.10 16 31 H 0.19 0.36 8.06 -52.48 -0.42 -0.06 16 32 H 0.15 2.57 5.34 -52.49 -0.28 2.29 16 33 H 0.17 3.56 5.70 -52.49 -0.30 3.26 16 LS Contribution 310.14 15.07 4.67 4.67 Total: -1.00 -36.70 310.14 -7.23 -43.94 By element: Atomic # 1 Polarization: 10.62 SS G_CDS: -1.98 Total: 8.64 kcal Atomic # 6 Polarization: -17.43 SS G_CDS: -3.38 Total: -20.81 kcal Atomic # 7 Polarization: -52.80 SS G_CDS: 0.74 Total: -52.07 kcal Atomic # 8 Polarization: -68.48 SS G_CDS: -1.73 Total: -70.21 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Atomic # 16 Polarization: 70.64 SS G_CDS: -0.53 Total: 70.11 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -36.70 -7.23 -43.94 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192982564.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.525 kcal (2) G-P(sol) polarization free energy of solvation -36.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.935 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.10 seconds