Wall clock time and date at job start Fri Apr 10 2020 18:27:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00432 * 2 1 4 4 H 1.48493 * 109.47135 * 269.99686 * 3 2 1 5 5 H 1.48500 * 109.47010 * 29.99498 * 3 2 1 6 6 H 1.48502 * 109.47080 * 149.99511 * 3 2 1 7 7 C 1.37885 * 119.99618 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99627 * 180.02562 * 7 2 1 9 9 S 1.76201 * 119.99910 * 0.02562 * 7 2 1 10 10 O 1.42097 * 106.40335 * 71.36042 * 9 7 2 11 11 O 1.42098 * 106.40131 * 298.44135 * 9 7 2 12 12 N 1.65605 * 107.21533 * 184.89931 * 9 7 2 13 13 C 1.39885 * 120.00175 * 298.45872 * 12 9 7 14 14 C 1.38885 * 120.01144 * 133.81122 * 13 12 9 15 15 C 1.38071 * 119.99045 * 180.02562 * 14 13 12 16 16 C 1.38812 * 120.01036 * 0.27662 * 15 14 13 17 17 N 1.40394 * 119.99207 * 179.70317 * 16 15 14 18 18 C 1.34520 * 125.20481 * 359.68983 * 17 16 15 19 19 O 1.21403 * 125.79044 * 0.04270 * 18 17 16 20 20 C 1.47961 * 108.41656 * 179.91282 * 18 17 16 21 21 C 1.34348 * 106.78910 * 0.35506 * 20 18 17 22 22 C 1.34519 * 125.20708 * 180.02562 * 17 16 15 23 23 O 1.21408 * 125.78941 * 359.93010 * 22 17 16 24 24 C 1.38817 * 120.01663 * 359.44793 * 16 15 14 25 25 C 1.38071 * 120.00414 * 0.55033 * 24 16 15 26 26 H 0.97003 * 119.99380 * 0.02562 * 1 2 3 27 27 H 0.97002 * 119.99640 * 118.45530 * 12 9 7 28 28 H 1.07991 * 120.00133 * 359.97438 * 14 13 12 29 29 H 1.07998 * 119.99583 * 179.97438 * 15 14 13 30 30 H 1.07998 * 126.60890 * 180.14699 * 20 18 17 31 31 H 1.08006 * 126.60783 * 179.80150 * 21 20 18 32 32 H 1.07999 * 119.99554 * 180.25266 * 24 16 15 33 33 H 1.07999 * 120.00263 * 179.70373 * 25 24 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4969 2.0463 -1.4000 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4400 0.7002 7 6 2.0045 -1.1942 0.0005 8 1 3.0846 -1.1942 0.0010 9 16 1.1234 -2.7200 0.0005 10 8 0.5459 -2.8500 -1.2913 11 8 0.3601 -2.7426 1.1989 12 7 2.2431 -3.9326 0.1363 13 6 3.2183 -4.0981 -0.8527 14 6 4.5461 -4.2909 -0.4938 15 6 5.5084 -4.4537 -1.4704 16 6 5.1499 -4.4189 -2.8110 17 7 6.1297 -4.5782 -3.8038 18 6 7.4423 -4.7641 -3.5753 19 8 7.9717 -4.8223 -2.4843 20 6 8.1306 -4.8889 -4.8790 21 6 7.1889 -4.7625 -5.8288 22 6 5.9006 -4.5619 -5.1292 23 8 4.8200 -4.4092 -5.6611 24 6 3.8221 -4.2318 -3.1701 25 6 2.8592 -4.0690 -2.1941 26 1 -0.4849 0.8401 -0.0004 27 1 2.2227 -4.5281 0.9018 28 1 4.8258 -4.3128 0.5491 29 1 6.5409 -4.6033 -1.1913 30 1 9.1872 -5.0474 -5.0369 31 1 7.3425 -4.7999 -6.8972 32 1 3.5430 -4.2089 -4.2132 33 1 1.8269 -3.9188 -2.4736 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192982564.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:37 Heat of formation + Delta-G solvation = -96.595544 kcal Electronic energy + Delta-G solvation = -24282.364595 eV Core-core repulsion = 20400.627803 eV Total energy + Delta-G solvation = -3881.736792 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 322.050 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -43.69704 -40.36594 -39.95882 -37.57683 -37.42561 -36.38611 -36.27285 -35.24088 -33.67872 -32.10927 -29.24120 -28.32978 -26.53258 -24.48439 -24.22511 -22.01421 -21.44559 -21.13786 -19.62139 -19.17636 -18.75969 -18.32507 -17.91505 -17.25634 -17.07835 -16.91611 -16.17960 -15.84801 -15.70034 -15.24859 -15.22018 -15.10439 -15.09622 -14.51949 -14.29290 -14.14008 -14.05428 -13.42411 -13.06943 -12.97889 -12.92258 -12.64282 -12.42865 -12.34549 -12.06288 -11.74309 -11.42563 -11.30100 -11.15350 -11.02921 -10.86234 -10.12669 -9.11509 -8.80067 -7.55536 -0.98692 -0.15890 0.23509 0.26538 1.14267 1.29655 1.30838 1.46774 1.56085 1.69548 2.15356 2.51375 2.63005 2.74074 2.81935 3.04503 3.51360 3.82632 3.89506 3.92894 4.05915 4.17755 4.27640 4.37779 4.56569 4.62854 4.84758 4.96125 5.01773 5.05340 5.14873 5.22823 5.40828 5.68722 5.74405 5.83256 6.02289 6.22210 6.43545 6.71502 8.14824 Molecular weight = 322.05amu Principal moments of inertia in cm(-1) A = 0.017186 B = 0.003906 C = 0.003702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1628.871149 B = 7167.548104 C = 7562.538649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.074 3.926 3 Si 0.988 3.012 4 H -0.256 1.256 5 H -0.257 1.257 6 H -0.249 1.249 7 C -1.035 5.035 8 H 0.116 0.884 9 S 2.713 3.287 10 O -1.028 7.028 11 O -1.029 7.029 12 N -1.060 6.060 13 C 0.148 3.852 14 C -0.111 4.111 15 C -0.118 4.118 16 C 0.102 3.898 17 N -0.542 5.542 18 C 0.528 3.472 19 O -0.471 6.471 20 C -0.107 4.107 21 C -0.111 4.111 22 C 0.522 3.478 23 O -0.478 6.478 24 C -0.121 4.121 25 C -0.147 4.147 26 H 0.301 0.699 27 H 0.428 0.572 28 H 0.162 0.838 29 H 0.167 0.833 30 H 0.236 0.764 31 H 0.232 0.768 32 H 0.152 0.848 33 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.832 -9.255 -10.759 25.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.140 4.140 3 Si 0.806 3.194 4 H -0.181 1.181 5 H -0.181 1.181 6 H -0.172 1.172 7 C -1.169 5.169 8 H 0.134 0.866 9 S 2.816 3.184 10 O -1.018 7.018 11 O -1.019 7.019 12 N -0.810 5.810 13 C 0.051 3.949 14 C -0.133 4.133 15 C -0.138 4.138 16 C 0.011 3.989 17 N -0.277 5.277 18 C 0.320 3.680 19 O -0.344 6.344 20 C -0.128 4.128 21 C -0.132 4.132 22 C 0.314 3.686 23 O -0.350 6.350 24 C -0.141 4.141 25 C -0.168 4.168 26 H 0.111 0.889 27 H 0.265 0.735 28 H 0.180 0.820 29 H 0.185 0.815 30 H 0.252 0.748 31 H 0.249 0.751 32 H 0.169 0.831 33 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 19.308 -9.180 -10.581 23.855 hybrid contribution -0.217 0.848 0.757 1.157 sum 19.091 -8.333 -9.825 23.031 Atomic orbital electron populations 1.69974 1.08588 1.32503 1.40932 1.25959 0.95406 1.05135 0.87454 0.85162 0.79250 0.74951 0.80071 1.18053 1.18114 1.17197 1.30741 1.06926 1.12087 1.67160 0.86595 1.00317 0.72329 0.73789 0.72010 1.93289 1.77312 1.87663 1.43498 1.93335 1.70544 1.88087 1.49927 1.53345 1.46950 1.48701 1.31965 1.17707 0.89244 1.00335 0.87615 1.21294 0.89570 1.00979 1.01464 1.21425 1.01934 1.00811 0.89611 1.17886 0.87746 1.04976 0.88283 1.44409 1.09835 1.64982 1.08496 1.20451 0.80629 0.74313 0.92608 1.90702 1.70274 1.43893 1.29483 1.24879 1.03584 0.97139 0.87158 1.24851 0.87336 0.97191 1.03800 1.20601 0.92217 0.74601 0.81184 1.90742 1.30079 1.42944 1.71228 1.21272 0.90607 1.00901 1.01329 1.21775 1.01759 1.01309 0.92001 0.88886 0.73476 0.82031 0.81549 0.74806 0.75129 0.83066 0.84296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -53.08 13.10 21.45 0.28 -52.80 16 2 C 0.07 4.16 5.46 84.66 0.46 4.62 16 3 Si 0.99 41.92 29.54 68.60 2.03 43.95 16 4 H -0.26 -10.39 7.11 99.48 0.71 -9.68 16 5 H -0.26 -10.13 7.11 99.48 0.71 -9.43 16 6 H -0.25 -9.93 7.11 99.48 0.71 -9.22 16 7 C -1.04 -58.01 9.61 67.74 0.65 -57.36 16 8 H 0.12 6.00 7.81 -2.91 -0.02 5.97 16 9 S 2.71 147.46 4.94 -56.49 -0.28 147.18 16 10 O -1.03 -60.75 15.15 -128.00 -1.94 -62.69 16 11 O -1.03 -61.54 17.91 -128.00 -2.29 -63.83 16 12 N -1.06 -43.67 5.77 -51.27 -0.30 -43.96 16 13 C 0.15 5.74 6.14 38.17 0.23 5.98 16 14 C -0.11 -3.51 9.96 22.39 0.22 -3.28 16 15 C -0.12 -3.51 9.34 22.37 0.21 -3.30 16 16 C 0.10 3.19 6.60 38.04 0.25 3.45 16 17 N -0.54 -13.00 2.87 -585.03 -1.68 -14.67 16 18 C 0.53 9.73 7.93 86.86 0.69 10.42 16 19 O -0.47 -11.03 15.02 -3.41 -0.05 -11.09 16 20 C -0.11 -0.61 11.15 23.96 0.27 -0.34 16 21 C -0.11 -0.74 11.15 23.96 0.27 -0.47 16 22 C 0.52 10.77 7.93 86.86 0.69 11.46 16 23 O -0.48 -13.41 15.02 -3.43 -0.05 -13.46 16 24 C -0.12 -4.36 9.34 22.37 0.21 -4.15 16 25 C -0.15 -6.04 9.22 22.39 0.21 -5.83 16 26 H 0.30 16.08 8.31 -92.71 -0.77 15.31 16 27 H 0.43 14.48 8.96 -96.74 -0.87 13.61 16 28 H 0.16 4.12 8.06 -2.92 -0.02 4.09 16 29 H 0.17 4.48 5.34 -2.91 -0.02 4.46 16 30 H 0.24 -0.88 8.06 -2.91 -0.02 -0.91 16 31 H 0.23 -0.52 8.06 -2.91 -0.02 -0.55 16 32 H 0.15 5.42 5.34 -2.91 -0.02 5.40 16 33 H 0.14 6.46 5.70 -2.91 -0.02 6.44 16 Total: -1.00 -85.10 310.14 0.42 -84.68 By element: Atomic # 1 Polarization: 25.17 SS G_CDS: 0.34 Total: 25.51 kcal Atomic # 6 Polarization: -43.17 SS G_CDS: 4.36 Total: -38.81 kcal Atomic # 7 Polarization: -109.74 SS G_CDS: -1.69 Total: -111.43 kcal Atomic # 8 Polarization: -146.74 SS G_CDS: -4.33 Total: -151.07 kcal Atomic # 14 Polarization: 41.92 SS G_CDS: 2.03 Total: 43.95 kcal Atomic # 16 Polarization: 147.46 SS G_CDS: -0.28 Total: 147.18 kcal Total: -85.10 0.42 -84.68 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192982564.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.920 kcal (2) G-P(sol) polarization free energy of solvation -85.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds