Wall clock time and date at job start Fri Apr 10 2020 18:27:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38716 * 120.10394 * 2 1 4 4 O 1.35600 * 119.76140 * 359.97438 * 3 2 1 5 5 C 1.34796 * 117.00171 * 174.04173 * 4 3 2 6 6 H 1.07995 * 120.00072 * 5.06074 * 5 4 3 7 7 C 1.38710 * 119.99906 * 185.06192 * 5 4 3 8 8 N 1.31514 * 120.00284 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 119.99705 * 179.97438 * 7 5 4 10 10 H 1.48507 * 109.47142 * 90.00364 * 9 7 5 11 11 H 1.48496 * 109.46974 * 209.99913 * 9 7 5 12 12 H 1.48498 * 109.47388 * 329.99951 * 9 7 5 13 13 C 1.39417 * 120.47787 * 179.67200 * 3 2 1 14 14 C 1.36524 * 120.36468 * 0.62352 * 13 3 2 15 15 C 1.39713 * 119.83483 * 359.68214 * 14 13 3 16 16 C 1.47228 * 120.96303 * 180.02562 * 15 14 13 17 17 C 1.47956 * 121.06013 * 359.94876 * 16 15 14 18 18 C 1.39570 * 120.14213 * 309.72269 * 17 16 15 19 19 C 1.37954 * 119.85333 * 179.77186 * 18 17 16 20 20 C 1.38367 * 120.13927 * 0.53225 * 19 18 17 21 21 C 1.38365 * 120.29461 * 359.70024 * 20 19 18 22 22 C 1.37957 * 120.14133 * 0.04322 * 21 20 19 23 23 C 1.38233 * 117.87608 * 179.97438 * 16 15 14 24 24 C 1.40531 * 119.51520 * 359.97438 * 23 16 15 25 25 O 1.21843 * 119.08449 * 179.97438 * 24 23 16 26 26 O 1.34231 * 121.82346 * 0.02562 * 24 23 16 27 27 C 1.35050 * 121.90633 * 359.97438 * 26 24 23 28 28 H 1.09001 * 109.47112 * 269.73132 * 1 2 3 29 29 H 1.08998 * 109.47076 * 149.72988 * 1 2 3 30 30 H 1.09001 * 109.47415 * 29.72506 * 1 2 3 31 31 H 0.96993 * 119.99981 * 179.97438 * 8 7 5 32 32 H 1.07998 * 119.81436 * 180.30388 * 13 3 2 33 33 H 1.08002 * 120.08370 * 179.69596 * 14 13 3 34 34 H 1.07999 * 120.07603 * 0.02562 * 18 17 16 35 35 H 1.07997 * 119.93239 * 180.27539 * 19 18 17 36 36 H 1.08003 * 119.85240 * 179.72828 * 20 19 18 37 37 H 1.08001 * 119.93152 * 180.02562 * 21 20 19 38 38 H 1.08000 * 120.06972 * 180.02562 * 22 21 20 39 39 H 1.07997 * 120.24591 * 179.97438 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2027 1.2001 0.0000 4 8 1.5220 2.3728 -0.0005 5 6 2.2478 3.5018 0.1242 6 1 3.3265 3.4517 0.1364 7 6 1.6091 4.7280 0.2368 8 7 0.2955 4.7891 0.2215 9 14 2.6150 6.2924 0.4103 10 1 2.9042 6.8469 -0.9366 11 1 1.8486 7.2884 1.2014 12 1 3.8916 5.9858 1.1041 13 6 3.5968 1.2092 0.0069 14 6 4.2947 0.0358 0.0009 15 6 3.6083 -1.1811 -0.0055 16 6 4.3358 -2.4611 -0.0115 17 6 5.8149 -2.4985 -0.0120 18 6 6.5348 -1.7409 -0.9372 19 6 7.9138 -1.7765 -0.9293 20 6 8.5831 -2.5696 -0.0141 21 6 7.8753 -3.3268 0.9025 22 6 6.4961 -3.2960 0.9087 23 6 3.5929 -3.6268 -0.0171 24 6 2.1895 -3.5533 -0.0163 25 8 1.5424 -4.5857 -0.0218 26 8 1.5423 -2.3774 -0.0108 27 6 2.2025 -1.1993 -0.0052 28 1 -0.3633 -0.0048 1.0277 29 1 -0.3633 -0.8875 -0.5180 30 1 -0.3634 0.8924 -0.5096 31 1 -0.1511 5.6465 0.3006 32 1 4.1277 2.1497 0.0118 33 1 5.3746 0.0482 0.0013 34 1 6.0135 -1.1249 -1.6550 35 1 8.4722 -1.1874 -1.6417 36 1 9.6628 -2.5974 -0.0150 37 1 8.4037 -3.9435 1.6145 38 1 5.9449 -3.8872 1.6250 39 1 4.0872 -4.5869 -0.0220 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000001904737.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:55 Heat of formation + Delta-G solvation = -35.478347 kcal Electronic energy + Delta-G solvation = -25846.269693 eV Core-core repulsion = 22071.112628 eV Total energy + Delta-G solvation = -3775.157065 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.104 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.38860 -39.38239 -39.23342 -37.52847 -36.12602 -34.56445 -32.67558 -31.90659 -31.12607 -30.31841 -28.67958 -26.43601 -25.90616 -24.49032 -23.49405 -22.58717 -21.79404 -20.83187 -19.58458 -17.88929 -17.54702 -16.97103 -16.55948 -16.40084 -16.26570 -15.41941 -15.01138 -14.74566 -14.64847 -14.27923 -14.21731 -13.66487 -13.62385 -13.51551 -13.18345 -12.78539 -12.71926 -12.48050 -12.06631 -12.00380 -11.79509 -11.63413 -11.51764 -11.32646 -11.19233 -11.08380 -10.97107 -10.69960 -9.97602 -9.85319 -9.70447 -9.14416 -9.13245 -8.68971 -8.08148 -7.39412 -6.85574 -4.38639 0.37508 1.20507 1.24270 1.67587 2.13927 2.82812 2.92018 2.96297 2.99560 3.28433 3.58507 3.68135 4.19987 4.26369 4.62668 4.73777 4.75488 4.76429 4.87276 4.92148 5.00419 5.23321 5.28194 5.34763 5.46384 5.61326 5.67182 5.82758 5.88180 5.95684 6.05330 6.16314 6.26115 6.29253 6.33799 6.36307 6.37933 6.56790 6.72646 6.75262 6.81100 6.90785 7.03075 7.20258 7.57614 7.68892 7.97252 8.57256 9.19473 10.29426 Molecular weight = 322.10amu Principal moments of inertia in cm(-1) A = 0.012110 B = 0.004026 C = 0.003088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2311.627024 B = 6953.149408 C = 9065.777853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C -0.187 4.187 3 C 0.192 3.808 4 O -0.139 6.139 5 C -0.394 4.394 6 H 0.102 0.898 7 C 0.045 3.955 8 N -0.838 5.838 9 Si 0.948 3.052 10 H -0.269 1.269 11 H -0.274 1.274 12 H -0.263 1.263 13 C -0.235 4.235 14 C -0.017 4.017 15 C -0.243 4.243 16 C 0.104 3.896 17 C -0.058 4.058 18 C -0.095 4.095 19 C -0.121 4.121 20 C -0.113 4.113 21 C -0.122 4.122 22 C -0.095 4.095 23 C -0.303 4.303 24 C 0.516 3.484 25 O -0.494 6.494 26 O -0.272 6.272 27 C 0.195 3.805 28 H 0.059 0.941 29 H 0.058 0.942 30 H 0.073 0.927 31 H 0.278 0.722 32 H 0.140 0.860 33 H 0.126 0.874 34 H 0.131 0.869 35 H 0.127 0.873 36 H 0.123 0.877 37 H 0.125 0.875 38 H 0.128 0.872 39 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.001 -7.683 -0.270 15.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.189 4.189 3 C 0.133 3.867 4 O -0.038 6.038 5 C -0.468 4.468 6 H 0.119 0.881 7 C -0.163 4.163 8 N -0.469 5.469 9 Si 0.771 3.229 10 H -0.194 1.194 11 H -0.198 1.198 12 H -0.187 1.187 13 C -0.254 4.254 14 C -0.036 4.036 15 C -0.245 4.245 16 C 0.103 3.897 17 C -0.058 4.058 18 C -0.113 4.113 19 C -0.139 4.139 20 C -0.131 4.131 21 C -0.140 4.140 22 C -0.113 4.113 23 C -0.323 4.323 24 C 0.369 3.631 25 O -0.386 6.386 26 O -0.184 6.184 27 C 0.151 3.849 28 H 0.078 0.922 29 H 0.077 0.923 30 H 0.092 0.908 31 H 0.089 0.911 32 H 0.157 0.843 33 H 0.144 0.856 34 H 0.149 0.851 35 H 0.145 0.855 36 H 0.141 0.859 37 H 0.143 0.857 38 H 0.146 0.854 39 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 13.009 -7.867 -0.275 15.205 hybrid contribution 0.785 0.720 0.099 1.070 sum 13.795 -7.147 -0.176 15.537 Atomic orbital electron populations 1.20306 0.89897 1.02354 1.01896 1.18054 0.96670 0.87311 1.16884 1.18887 0.89994 0.86502 0.91335 1.83892 1.35581 1.11086 1.73230 1.21607 0.91717 0.81614 1.51887 0.88088 1.25469 0.96271 0.99019 0.95582 1.70007 1.07747 1.27422 1.41701 0.85597 0.79074 0.79143 0.79088 1.19409 1.19834 1.18749 1.20964 0.93727 0.99114 1.11593 1.20510 0.99072 0.90295 0.93694 1.18361 0.91224 0.93046 1.21865 1.20400 0.91500 0.92032 0.85807 1.18754 0.90972 0.98538 0.97571 1.21389 0.94131 0.97653 0.98119 1.21124 0.94074 0.99440 0.99277 1.21282 1.00013 0.96469 0.95328 1.21092 0.93847 0.99821 0.99243 1.21300 0.94414 0.97507 0.98039 1.22398 0.92611 0.99210 1.18087 1.18846 0.88207 0.80883 0.75188 1.90921 1.70350 1.27931 1.49415 1.83412 1.43590 1.13821 1.77561 1.18201 0.88606 0.82366 0.95767 0.92185 0.92272 0.90806 0.91145 0.84271 0.85600 0.85091 0.85545 0.85925 0.85675 0.85435 0.83173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.72 9.58 36.00 0.35 -1.37 16 2 C -0.19 -3.86 5.91 -104.30 -0.62 -4.48 16 3 C 0.19 4.17 6.62 -38.97 -0.26 3.91 16 4 O -0.14 -3.49 8.77 0.61 0.01 -3.49 16 5 C -0.39 -9.60 9.48 30.91 0.29 -9.31 16 6 H 0.10 2.22 5.17 -52.49 -0.27 1.95 16 7 C 0.05 1.09 5.49 -17.51 -0.10 1.00 16 8 N -0.84 -21.93 13.67 55.48 0.76 -21.17 16 9 Si 0.95 18.05 29.55 -169.99 -5.02 13.03 16 10 H -0.27 -5.01 7.11 56.52 0.40 -4.61 16 11 H -0.27 -5.16 7.11 56.52 0.40 -4.75 16 12 H -0.26 -4.80 7.11 56.52 0.40 -4.40 16 13 C -0.24 -4.43 9.09 -39.76 -0.36 -4.80 16 14 C -0.02 -0.29 8.75 -39.65 -0.35 -0.63 16 15 C -0.24 -4.23 5.87 -104.80 -0.62 -4.84 16 16 C 0.10 1.57 5.66 -102.27 -0.58 1.00 16 17 C -0.06 -0.74 5.13 -104.92 -0.54 -1.27 16 18 C -0.10 -1.07 7.76 -39.19 -0.30 -1.38 16 19 C -0.12 -1.13 10.03 -39.64 -0.40 -1.53 16 20 C -0.11 -0.97 10.04 -39.49 -0.40 -1.37 16 21 C -0.12 -1.11 10.03 -39.64 -0.40 -1.51 16 22 C -0.09 -1.03 9.56 -39.19 -0.37 -1.41 16 23 C -0.30 -4.81 9.51 -38.72 -0.37 -5.17 16 24 C 0.52 9.80 7.88 31.60 0.25 10.05 16 25 O -0.49 -10.45 17.91 -19.64 -0.35 -10.80 16 26 O -0.27 -5.41 8.88 -20.90 -0.19 -5.59 16 27 C 0.20 3.80 6.72 -38.55 -0.26 3.54 16 28 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 29 H 0.06 1.07 7.57 -51.93 -0.39 0.68 16 30 H 0.07 1.52 7.51 -51.93 -0.39 1.13 16 31 H 0.28 6.65 8.31 -40.82 -0.34 6.32 16 32 H 0.14 2.51 5.60 -52.49 -0.29 2.21 16 33 H 0.13 1.73 5.79 -52.49 -0.30 1.43 16 34 H 0.13 1.45 7.38 -52.49 -0.39 1.06 16 35 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 36 H 0.12 0.76 8.06 -52.48 -0.42 0.34 16 37 H 0.13 0.84 8.06 -52.49 -0.42 0.42 16 38 H 0.13 1.27 8.06 -52.49 -0.42 0.84 16 39 H 0.15 2.07 8.06 -52.49 -0.42 1.65 16 LS Contribution 338.96 15.07 5.11 5.11 Total: -1.00 -28.62 338.96 -8.42 -37.04 By element: Atomic # 1 Polarization: 9.16 SS G_CDS: -3.71 Total: 5.45 kcal Atomic # 6 Polarization: -14.56 SS G_CDS: -5.02 Total: -19.58 kcal Atomic # 7 Polarization: -21.93 SS G_CDS: 0.76 Total: -21.17 kcal Atomic # 8 Polarization: -19.34 SS G_CDS: -0.53 Total: -19.88 kcal Atomic # 14 Polarization: 18.05 SS G_CDS: -5.02 Total: 13.03 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -28.62 -8.42 -37.04 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000001904737.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.559 kcal (2) G-P(sol) polarization free energy of solvation -28.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.037 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds