Wall clock time and date at job start Fri Apr 10 2020 18:27:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38716 * 120.10394 * 2 1 4 4 O 1.35600 * 119.76140 * 359.97438 * 3 2 1 5 5 C 1.34796 * 117.00171 * 174.04173 * 4 3 2 6 6 H 1.07995 * 120.00072 * 5.06074 * 5 4 3 7 7 C 1.38710 * 119.99906 * 185.06192 * 5 4 3 8 8 N 1.31514 * 120.00284 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 119.99705 * 179.97438 * 7 5 4 10 10 H 1.48507 * 109.47142 * 90.00364 * 9 7 5 11 11 H 1.48496 * 109.46974 * 209.99913 * 9 7 5 12 12 H 1.48498 * 109.47388 * 329.99951 * 9 7 5 13 13 C 1.39417 * 120.47787 * 179.67200 * 3 2 1 14 14 C 1.36524 * 120.36468 * 0.62352 * 13 3 2 15 15 C 1.39713 * 119.83483 * 359.68214 * 14 13 3 16 16 C 1.47228 * 120.96303 * 180.02562 * 15 14 13 17 17 C 1.47956 * 121.06013 * 359.94876 * 16 15 14 18 18 C 1.39570 * 120.14213 * 309.72269 * 17 16 15 19 19 C 1.37954 * 119.85333 * 179.77186 * 18 17 16 20 20 C 1.38367 * 120.13927 * 0.53225 * 19 18 17 21 21 C 1.38365 * 120.29461 * 359.70024 * 20 19 18 22 22 C 1.37957 * 120.14133 * 0.04322 * 21 20 19 23 23 C 1.38233 * 117.87608 * 179.97438 * 16 15 14 24 24 C 1.40531 * 119.51520 * 359.97438 * 23 16 15 25 25 O 1.21843 * 119.08449 * 179.97438 * 24 23 16 26 26 O 1.34231 * 121.82346 * 0.02562 * 24 23 16 27 27 C 1.35050 * 121.90633 * 359.97438 * 26 24 23 28 28 H 1.09001 * 109.47112 * 269.73132 * 1 2 3 29 29 H 1.08998 * 109.47076 * 149.72988 * 1 2 3 30 30 H 1.09001 * 109.47415 * 29.72506 * 1 2 3 31 31 H 0.96993 * 119.99981 * 179.97438 * 8 7 5 32 32 H 1.07998 * 119.81436 * 180.30388 * 13 3 2 33 33 H 1.08002 * 120.08370 * 179.69596 * 14 13 3 34 34 H 1.07999 * 120.07603 * 0.02562 * 18 17 16 35 35 H 1.07997 * 119.93239 * 180.27539 * 19 18 17 36 36 H 1.08003 * 119.85240 * 179.72828 * 20 19 18 37 37 H 1.08001 * 119.93152 * 180.02562 * 21 20 19 38 38 H 1.08000 * 120.06972 * 180.02562 * 22 21 20 39 39 H 1.07997 * 120.24591 * 179.97438 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2027 1.2001 0.0000 4 8 1.5220 2.3728 -0.0005 5 6 2.2478 3.5018 0.1242 6 1 3.3265 3.4517 0.1364 7 6 1.6091 4.7280 0.2368 8 7 0.2955 4.7891 0.2215 9 14 2.6150 6.2924 0.4103 10 1 2.9042 6.8469 -0.9366 11 1 1.8486 7.2884 1.2014 12 1 3.8916 5.9858 1.1041 13 6 3.5968 1.2092 0.0069 14 6 4.2947 0.0358 0.0009 15 6 3.6083 -1.1811 -0.0055 16 6 4.3358 -2.4611 -0.0115 17 6 5.8149 -2.4985 -0.0120 18 6 6.5348 -1.7409 -0.9372 19 6 7.9138 -1.7765 -0.9293 20 6 8.5831 -2.5696 -0.0141 21 6 7.8753 -3.3268 0.9025 22 6 6.4961 -3.2960 0.9087 23 6 3.5929 -3.6268 -0.0171 24 6 2.1895 -3.5533 -0.0163 25 8 1.5424 -4.5857 -0.0218 26 8 1.5423 -2.3774 -0.0108 27 6 2.2025 -1.1993 -0.0052 28 1 -0.3633 -0.0048 1.0277 29 1 -0.3633 -0.8875 -0.5180 30 1 -0.3634 0.8924 -0.5096 31 1 -0.1511 5.6465 0.3006 32 1 4.1277 2.1497 0.0118 33 1 5.3746 0.0482 0.0013 34 1 6.0135 -1.1249 -1.6550 35 1 8.4722 -1.1874 -1.6417 36 1 9.6628 -2.5974 -0.0150 37 1 8.4037 -3.9435 1.6145 38 1 5.9449 -3.8872 1.6250 39 1 4.0872 -4.5869 -0.0220 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000001904737.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:54 Heat of formation + Delta-G solvation = -48.229895 kcal Electronic energy + Delta-G solvation = -25846.822642 eV Core-core repulsion = 22071.112628 eV Total energy + Delta-G solvation = -3775.710014 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.104 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.91934 -40.92251 -40.17646 -39.12560 -37.63694 -35.90248 -34.35364 -33.41927 -31.90666 -31.30248 -30.21404 -28.04832 -27.56526 -25.68412 -25.04888 -23.37352 -23.07053 -22.16989 -21.09039 -19.48276 -18.91531 -18.28761 -18.05290 -17.84066 -17.61492 -16.49412 -16.28421 -16.22065 -15.90897 -15.81676 -15.58899 -15.08769 -14.60398 -14.52355 -14.42876 -14.28784 -14.12513 -13.69209 -13.63702 -13.59769 -13.28756 -12.93093 -12.75565 -12.65573 -12.65086 -12.30598 -12.13146 -11.99441 -11.53221 -11.26510 -11.22543 -10.73582 -9.87345 -9.67210 -9.61029 -8.97390 -8.58089 -6.23439 -0.89722 0.08343 0.24643 0.47492 0.72883 1.27657 1.41632 1.45874 1.56553 1.82632 2.14190 2.63421 2.80968 3.00304 3.10002 3.20586 3.36334 3.51919 3.87992 3.92597 4.04548 4.09174 4.20340 4.28507 4.34182 4.47846 4.53695 4.56890 4.65771 4.72424 4.74138 4.80753 4.96399 5.04189 5.12066 5.14087 5.21938 5.35705 5.40445 5.52974 5.54134 5.59414 5.65193 5.86858 6.02976 6.15469 6.43953 6.84691 7.53273 8.62221 Molecular weight = 322.10amu Principal moments of inertia in cm(-1) A = 0.012110 B = 0.004026 C = 0.003088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2311.627024 B = 6953.149408 C = 9065.777853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.203 4.203 3 C 0.176 3.824 4 O -0.189 6.189 5 C -0.418 4.418 6 H 0.119 0.881 7 C -0.011 4.011 8 N -0.902 5.902 9 Si 1.020 2.980 10 H -0.262 1.262 11 H -0.275 1.275 12 H -0.246 1.246 13 C -0.238 4.238 14 C 0.003 3.997 15 C -0.233 4.233 16 C 0.122 3.878 17 C -0.086 4.086 18 C -0.105 4.105 19 C -0.122 4.122 20 C -0.104 4.104 21 C -0.122 4.122 22 C -0.099 4.099 23 C -0.295 4.295 24 C 0.509 3.491 25 O -0.522 6.522 26 O -0.286 6.286 27 C 0.185 3.815 28 H 0.061 0.939 29 H 0.068 0.932 30 H 0.055 0.945 31 H 0.278 0.722 32 H 0.150 0.850 33 H 0.164 0.836 34 H 0.129 0.871 35 H 0.150 0.850 36 H 0.153 0.847 37 H 0.151 0.849 38 H 0.133 0.867 39 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.007 -9.172 -0.081 21.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.205 4.205 3 C 0.120 3.880 4 O -0.091 6.091 5 C -0.493 4.493 6 H 0.136 0.864 7 C -0.212 4.212 8 N -0.537 5.537 9 Si 0.838 3.162 10 H -0.187 1.187 11 H -0.200 1.200 12 H -0.169 1.169 13 C -0.257 4.257 14 C -0.015 4.015 15 C -0.234 4.234 16 C 0.121 3.879 17 C -0.086 4.086 18 C -0.123 4.123 19 C -0.140 4.140 20 C -0.122 4.122 21 C -0.140 4.140 22 C -0.117 4.117 23 C -0.314 4.314 24 C 0.364 3.636 25 O -0.416 6.416 26 O -0.198 6.198 27 C 0.140 3.860 28 H 0.080 0.920 29 H 0.087 0.913 30 H 0.074 0.926 31 H 0.087 0.913 32 H 0.167 0.833 33 H 0.181 0.819 34 H 0.147 0.853 35 H 0.168 0.832 36 H 0.170 0.830 37 H 0.169 0.831 38 H 0.151 0.849 39 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 18.055 -9.412 -0.090 20.361 hybrid contribution -0.532 0.676 0.023 0.861 sum 17.523 -8.736 -0.066 19.580 Atomic orbital electron populations 1.20229 0.89944 1.01836 1.01868 1.18275 0.97155 0.87875 1.17189 1.19309 0.91438 0.86151 0.91086 1.83903 1.36715 1.11959 1.76520 1.22104 0.92613 0.81880 1.52710 0.86423 1.26668 0.97277 1.02290 0.94955 1.70149 1.09843 1.28085 1.45619 0.84562 0.77840 0.74498 0.79279 1.18678 1.19995 1.16926 1.21143 0.92576 1.00556 1.11386 1.20825 1.00652 0.88783 0.91236 1.18744 0.90506 0.94823 1.19373 1.20545 0.93283 0.90319 0.83722 1.18666 0.88946 1.01163 0.99779 1.21471 0.95183 0.97667 0.97940 1.21430 0.93298 0.99487 0.99737 1.21719 1.01655 0.94820 0.93959 1.21437 0.93126 0.99770 0.99631 1.21463 0.95464 0.97094 0.97719 1.22532 0.90772 1.00749 1.17391 1.19365 0.89358 0.80157 0.74744 1.90905 1.71104 1.28605 1.50968 1.83361 1.44646 1.14268 1.77560 1.18308 0.89596 0.81858 0.96249 0.92039 0.91263 0.92625 0.91279 0.83292 0.81906 0.85318 0.83249 0.82959 0.83100 0.84888 0.80640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -3.41 9.58 71.23 0.68 -2.73 16 2 C -0.20 -8.68 5.91 -19.66 -0.12 -8.79 16 3 C 0.18 7.89 6.62 22.67 0.15 8.04 16 4 O -0.19 -10.04 8.77 -20.75 -0.18 -10.23 16 5 C -0.42 -21.26 9.48 67.93 0.64 -20.61 16 6 H 0.12 5.23 5.17 -2.91 -0.02 5.22 16 7 C -0.01 -0.56 5.49 84.85 0.47 -0.09 16 8 N -0.90 -50.36 13.67 21.62 0.30 -50.06 16 9 Si 1.02 37.71 29.55 68.60 2.03 39.73 16 10 H -0.26 -9.25 7.11 99.48 0.71 -8.54 16 11 H -0.28 -10.05 7.11 99.48 0.71 -9.34 16 12 H -0.25 -8.24 7.11 99.48 0.71 -7.54 16 13 C -0.24 -8.81 9.09 22.15 0.20 -8.61 16 14 C 0.00 0.09 8.75 22.23 0.19 0.28 16 15 C -0.23 -7.69 5.87 -19.98 -0.12 -7.81 16 16 C 0.12 3.38 5.66 -18.34 -0.10 3.28 16 17 C -0.09 -1.84 5.13 -20.06 -0.10 -1.94 16 18 C -0.10 -1.94 7.76 22.52 0.17 -1.76 16 19 C -0.12 -1.66 10.03 22.23 0.22 -1.44 16 20 C -0.10 -1.20 10.04 22.33 0.22 -0.98 16 21 C -0.12 -1.58 10.03 22.23 0.22 -1.36 16 22 C -0.10 -1.75 9.56 22.52 0.22 -1.54 16 23 C -0.30 -8.70 9.51 22.83 0.22 -8.48 16 24 C 0.51 18.97 7.88 68.38 0.54 19.51 16 25 O -0.52 -21.92 17.91 18.81 0.34 -21.58 16 26 O -0.29 -11.43 8.88 14.32 0.13 -11.31 16 27 C 0.18 7.18 6.72 22.94 0.15 7.33 16 28 H 0.06 2.47 8.14 -2.39 -0.02 2.45 16 29 H 0.07 2.65 7.57 -2.39 -0.02 2.63 16 30 H 0.05 2.49 7.51 -2.39 -0.02 2.47 16 31 H 0.28 14.24 8.31 -92.71 -0.77 13.47 16 32 H 0.15 5.21 5.60 -2.91 -0.02 5.19 16 33 H 0.16 3.82 5.79 -2.91 -0.02 3.81 16 34 H 0.13 2.39 7.38 -2.91 -0.02 2.37 16 35 H 0.15 1.34 8.06 -2.91 -0.02 1.32 16 36 H 0.15 0.90 8.06 -2.91 -0.02 0.88 16 37 H 0.15 1.18 8.06 -2.91 -0.02 1.16 16 38 H 0.13 2.13 8.06 -2.91 -0.02 2.11 16 39 H 0.18 4.28 8.06 -2.91 -0.02 4.26 16 Total: -1.00 -66.80 338.96 7.58 -59.22 By element: Atomic # 1 Polarization: 20.80 SS G_CDS: 1.11 Total: 21.91 kcal Atomic # 6 Polarization: -31.56 SS G_CDS: 3.87 Total: -27.69 kcal Atomic # 7 Polarization: -50.36 SS G_CDS: 0.30 Total: -50.06 kcal Atomic # 8 Polarization: -43.39 SS G_CDS: 0.28 Total: -43.11 kcal Atomic # 14 Polarization: 37.71 SS G_CDS: 2.03 Total: 39.73 kcal Total: -66.80 7.58 -59.22 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000001904737.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.989 kcal (2) G-P(sol) polarization free energy of solvation -66.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds