Wall clock time and date at job start Fri Apr 10 2020 18:28:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.33523 * 118.72368 * 2 1 4 4 C 1.34783 * 123.29782 * 180.28207 * 3 2 1 5 5 C 1.38859 * 120.55367 * 179.97438 * 4 3 2 6 6 C 1.38582 * 119.80677 * 180.02562 * 5 4 3 7 7 O 1.35609 * 119.71028 * 180.02562 * 6 5 4 8 8 C 1.34814 * 116.99705 * 354.44348 * 7 6 5 9 9 H 1.08001 * 120.00382 * 5.06417 * 8 7 6 10 10 C 1.38698 * 119.99938 * 185.05840 * 8 7 6 11 11 N 1.31530 * 119.99728 * 0.02562 * 10 8 7 12 12 Si 1.86799 * 120.00392 * 180.02562 * 10 8 7 13 13 H 1.48500 * 109.47055 * 89.99913 * 12 10 8 14 14 H 1.48494 * 109.47125 * 210.00314 * 12 10 8 15 15 H 1.48503 * 109.46484 * 330.00101 * 12 10 8 16 16 C 1.39461 * 120.57959 * 0.04110 * 6 5 4 17 17 C 1.36527 * 120.30442 * 0.02562 * 16 6 5 18 18 C 1.39595 * 119.76335 * 359.97438 * 17 16 6 19 19 C 1.47418 * 121.23397 * 179.97438 * 18 17 16 20 20 O 1.21893 * 121.61550 * 0.04173 * 19 18 17 21 21 C 1.35835 * 118.72232 * 180.26454 * 2 1 3 22 22 C 1.48317 * 120.64111 * 359.73935 * 21 2 1 23 23 C 1.39372 * 120.12320 * 294.72772 * 22 21 2 24 24 C 1.38013 * 119.87142 * 179.72105 * 23 22 21 25 25 C 1.38330 * 120.12016 * 0.55385 * 24 23 22 26 26 C 1.38327 * 120.25675 * 359.72157 * 25 24 23 27 27 C 1.38013 * 120.12296 * 359.97438 * 26 25 24 28 28 H 1.08998 * 109.47187 * 269.73522 * 1 2 3 29 29 H 1.08998 * 109.47075 * 29.73353 * 1 2 3 30 30 H 1.08995 * 109.47165 * 149.73254 * 1 2 3 31 31 H 1.07998 * 120.09949 * 0.04484 * 5 4 3 32 32 H 0.97000 * 119.99894 * 179.97438 * 11 10 8 33 33 H 1.08005 * 119.84857 * 179.97438 * 16 6 5 34 34 H 1.07998 * 120.11761 * 179.97438 * 17 16 6 35 35 H 1.07997 * 120.06801 * 359.97438 * 23 22 21 36 36 H 1.07997 * 119.93833 * 180.24988 * 24 23 22 37 37 H 1.08004 * 119.87132 * 179.74431 * 25 24 23 38 38 H 1.07999 * 119.93858 * 180.02562 * 26 25 24 39 39 H 1.07997 * 120.06100 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1487 1.1709 0.0000 4 6 3.4922 1.2784 -0.0055 5 6 4.1005 2.5267 -0.0058 6 6 5.4832 2.6192 -0.0120 7 8 6.0752 3.8393 -0.0117 8 6 5.2661 4.9121 -0.1215 9 1 4.1940 4.7821 -0.1221 10 6 5.8107 6.1827 -0.2334 11 7 7.1164 6.3410 -0.2330 12 14 4.6898 7.6694 -0.3848 13 1 4.3766 8.1930 0.9691 14 1 5.3706 8.7239 -1.1782 15 1 3.4310 7.2728 -1.0656 16 6 6.2712 1.4686 -0.0190 17 6 5.6880 0.2342 -0.0203 18 6 4.2963 0.1252 -0.0140 19 6 3.6326 -1.1911 -0.0157 20 8 4.2717 -2.2290 -0.0219 21 6 2.1598 -1.1912 -0.0055 22 6 1.4040 -2.4674 -0.0056 23 6 0.6180 -2.8149 1.0917 24 6 -0.0876 -4.0009 1.0837 25 6 -0.0068 -4.8494 -0.0059 26 6 0.7761 -4.5123 -1.0952 27 6 1.4812 -3.3259 -1.1008 28 1 -0.3633 -0.0047 1.0276 29 1 -0.3633 0.8923 -0.5097 30 1 -0.3633 -0.8875 -0.5180 31 1 3.4978 3.4229 -0.0007 32 1 7.4973 7.2296 -0.3117 33 1 7.3478 1.5544 -0.0243 34 1 6.3011 -0.6549 -0.0261 35 1 0.5581 -2.1555 1.9449 36 1 -0.7002 -4.2694 1.9316 37 1 -0.5575 -5.7785 -0.0061 38 1 0.8352 -5.1784 -1.9433 39 1 2.0919 -3.0635 -1.9520 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000002412624.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:28:01 Heat of formation + Delta-G solvation = -43.813561 kcal Electronic energy + Delta-G solvation = -25560.750121 eV Core-core repulsion = 21785.231614 eV Total energy + Delta-G solvation = -3775.518507 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.104 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.81271 -40.74767 -40.12923 -39.39695 -37.79519 -35.25817 -34.45015 -32.30111 -31.80144 -31.56100 -30.78795 -28.85235 -27.45001 -25.26334 -24.17017 -23.44627 -23.19938 -22.57052 -20.76855 -19.83223 -19.14780 -18.31434 -17.80732 -17.51260 -17.23476 -16.67150 -16.21870 -16.13023 -15.80811 -15.66704 -15.61030 -15.09456 -15.03753 -14.57943 -14.55085 -14.32487 -14.23481 -13.91969 -13.79149 -13.62614 -13.34586 -13.10302 -12.96965 -12.57325 -12.47864 -12.13886 -12.10841 -11.99353 -11.56201 -10.91964 -10.82066 -10.45148 -9.81682 -9.77893 -9.39393 -9.19903 -8.61035 -6.29436 -0.37467 -0.15805 0.37785 0.52724 0.60615 1.22627 1.36869 1.43467 1.54415 1.83805 2.10949 2.69103 2.79550 2.98943 3.07772 3.17973 3.43163 3.53914 3.85628 4.06379 4.09873 4.12584 4.17025 4.28592 4.30680 4.49703 4.56083 4.59078 4.65581 4.68353 4.71462 4.79485 4.85591 5.01427 5.06888 5.14142 5.17401 5.33207 5.35993 5.57874 5.62259 5.63541 5.68512 5.84919 6.10916 6.27936 6.60009 6.81767 7.48473 8.59406 Molecular weight = 322.10amu Principal moments of inertia in cm(-1) A = 0.024671 B = 0.002935 C = 0.002689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1134.643984 B = 9537.512268 C =10410.172889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.170 3.830 3 O -0.222 6.222 4 C 0.197 3.803 5 C -0.269 4.269 6 C 0.180 3.820 7 O -0.193 6.193 8 C -0.422 4.422 9 H 0.113 0.887 10 C -0.010 4.010 11 N -0.903 5.903 12 Si 1.020 2.980 13 H -0.261 1.261 14 H -0.270 1.270 15 H -0.249 1.249 16 C -0.205 4.205 17 C 0.008 3.992 18 C -0.317 4.317 19 C 0.429 3.571 20 O -0.514 6.514 21 C -0.281 4.281 22 C -0.025 4.025 23 C -0.115 4.115 24 C -0.118 4.118 25 C -0.120 4.120 26 C -0.124 4.124 27 C -0.118 4.118 28 H 0.120 0.880 29 H 0.103 0.897 30 H 0.108 0.892 31 H 0.148 0.852 32 H 0.279 0.721 33 H 0.140 0.860 34 H 0.150 0.850 35 H 0.132 0.868 36 H 0.151 0.849 37 H 0.150 0.850 38 H 0.140 0.860 39 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.471 -14.334 0.676 23.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.122 3.878 3 O -0.127 6.127 4 C 0.152 3.848 5 C -0.288 4.288 6 C 0.125 3.875 7 O -0.096 6.096 8 C -0.497 4.497 9 H 0.130 0.870 10 C -0.211 4.211 11 N -0.538 5.538 12 Si 0.838 3.162 13 H -0.185 1.185 14 H -0.195 1.195 15 H -0.173 1.173 16 C -0.224 4.224 17 C -0.010 4.010 18 C -0.319 4.319 19 C 0.318 3.682 20 O -0.400 6.400 21 C -0.284 4.284 22 C -0.025 4.025 23 C -0.133 4.133 24 C -0.135 4.135 25 C -0.138 4.138 26 C -0.141 4.141 27 C -0.136 4.136 28 H 0.138 0.862 29 H 0.121 0.879 30 H 0.126 0.874 31 H 0.166 0.834 32 H 0.089 0.911 33 H 0.158 0.842 34 H 0.167 0.833 35 H 0.150 0.850 36 H 0.169 0.831 37 H 0.168 0.832 38 H 0.158 0.842 39 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -17.855 -14.379 0.670 22.935 hybrid contribution 0.684 0.812 -0.167 1.075 sum -17.170 -13.567 0.503 21.889 Atomic orbital electron populations 1.21239 0.81966 1.06291 1.06548 1.23046 0.95854 0.81118 0.87785 1.82782 1.19437 1.32716 1.77758 1.18800 0.79058 0.93286 0.93649 1.20283 0.94015 0.95906 1.18642 1.19533 0.90918 0.86810 0.90218 1.83959 1.36856 1.11561 1.77229 1.22031 0.91261 0.83160 1.53253 0.86993 1.26683 0.98312 1.01345 0.94754 1.70144 1.12558 1.25409 1.45660 0.84562 0.77329 0.74866 0.79408 1.18530 1.19500 1.17270 1.20246 1.00700 0.89589 1.11884 1.20499 0.92458 0.97060 0.90969 1.20410 0.95641 0.93731 1.22164 1.19941 0.88688 0.87236 0.72347 1.90599 1.69516 1.35549 1.44336 1.20966 0.93688 0.94108 1.19603 1.18113 0.96794 0.92125 0.95466 1.21417 0.96842 0.98157 0.96923 1.21408 0.99283 0.93494 0.99360 1.21558 0.98604 1.00419 0.93191 1.21331 0.96960 0.95958 0.99888 1.21262 0.99370 0.95195 0.97808 0.86198 0.87851 0.87371 0.83421 0.91128 0.84237 0.83286 0.85047 0.83085 0.83245 0.84212 0.87774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.61 9.10 71.24 0.65 -0.96 16 2 C 0.17 4.49 6.97 25.13 0.18 4.67 16 3 O -0.22 -7.15 9.59 0.03 0.00 -7.15 16 4 C 0.20 7.58 6.77 22.99 0.16 7.74 16 5 C -0.27 -11.42 9.11 22.50 0.20 -11.22 16 6 C 0.18 8.47 6.65 22.65 0.15 8.62 16 7 O -0.19 -10.68 9.74 -21.03 -0.20 -10.89 16 8 C -0.42 -22.51 9.48 67.93 0.64 -21.87 16 9 H 0.11 5.41 5.17 -2.91 -0.02 5.39 16 10 C -0.01 -0.53 5.49 84.85 0.47 -0.06 16 11 N -0.90 -51.30 13.67 21.62 0.30 -51.00 16 12 Si 1.02 39.07 29.55 68.60 2.03 41.10 16 13 H -0.26 -9.50 7.11 99.48 0.71 -8.79 16 14 H -0.27 -10.03 7.11 99.48 0.71 -9.33 16 15 H -0.25 -8.83 7.11 99.48 0.71 -8.12 16 16 C -0.21 -8.54 9.92 22.16 0.22 -8.32 16 17 C 0.01 0.33 9.61 22.20 0.21 0.54 16 18 C -0.32 -12.44 5.89 -19.96 -0.12 -12.56 16 19 C 0.43 16.33 7.15 27.07 0.19 16.52 16 20 O -0.51 -21.74 16.99 -4.97 -0.08 -21.82 16 21 C -0.28 -8.57 5.45 -18.77 -0.10 -8.67 16 22 C -0.02 -0.64 3.79 -20.05 -0.08 -0.72 16 23 C -0.12 -2.33 8.71 22.49 0.20 -2.14 16 24 C -0.12 -1.85 10.03 22.24 0.22 -1.62 16 25 C -0.12 -1.85 10.04 22.31 0.22 -1.63 16 26 C -0.12 -2.36 10.03 22.24 0.22 -2.14 16 27 C -0.12 -2.98 9.70 22.49 0.22 -2.77 16 28 H 0.12 1.30 8.14 -2.39 -0.02 1.28 16 29 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 30 H 0.11 1.51 6.74 -2.39 -0.02 1.49 16 31 H 0.15 6.14 5.59 -2.91 -0.02 6.12 16 32 H 0.28 14.48 8.31 -92.71 -0.77 13.70 16 33 H 0.14 5.44 8.06 -2.91 -0.02 5.41 16 34 H 0.15 5.20 7.80 -2.91 -0.02 5.18 16 35 H 0.13 2.28 8.06 -2.91 -0.02 2.26 16 36 H 0.15 1.45 8.06 -2.91 -0.02 1.43 16 37 H 0.15 1.39 8.06 -2.91 -0.02 1.37 16 38 H 0.14 2.03 8.06 -2.91 -0.02 2.01 16 39 H 0.10 2.84 8.06 -2.91 -0.02 2.81 16 Total: -1.00 -69.83 343.01 6.99 -62.83 By element: Atomic # 1 Polarization: 22.42 SS G_CDS: 1.10 Total: 23.52 kcal Atomic # 6 Polarization: -40.44 SS G_CDS: 3.86 Total: -36.58 kcal Atomic # 7 Polarization: -51.30 SS G_CDS: 0.30 Total: -51.00 kcal Atomic # 8 Polarization: -39.58 SS G_CDS: -0.29 Total: -39.86 kcal Atomic # 14 Polarization: 39.07 SS G_CDS: 2.03 Total: 41.10 kcal Total: -69.83 6.99 -62.83 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000002412624.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.019 kcal (2) G-P(sol) polarization free energy of solvation -69.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds