Wall clock time and date at job start Fri Apr 10 2020 18:25:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46904 * 111.00075 * 2 1 4 4 C 1.46901 * 110.99786 * 123.95372 * 2 1 3 5 5 C 1.52995 * 109.47242 * 164.65209 * 4 2 1 6 6 C 1.50700 * 115.56118 * 321.31750 * 5 4 2 7 7 O 1.21286 * 120.00261 * 92.83095 * 6 5 4 8 8 N 1.34777 * 120.00050 * 272.83450 * 6 5 4 9 9 C 1.46507 * 120.00185 * 184.86597 * 8 6 5 10 10 H 1.09005 * 112.87957 * 327.71926 * 9 8 6 11 11 C 1.53946 * 113.66658 * 99.06493 * 9 8 6 12 12 C 1.53955 * 87.29503 * 139.20656 * 11 9 8 13 13 H 1.08999 * 113.65827 * 89.73675 * 12 11 9 14 14 N 1.46499 * 113.66260 * 220.70269 * 12 11 9 15 15 C 1.36933 * 120.00006 * 255.49521 * 14 12 11 16 16 H 1.08006 * 119.99701 * 359.97438 * 15 14 12 17 17 C 1.38812 * 120.00355 * 180.02562 * 15 14 12 18 18 N 1.31618 * 119.99641 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00188 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.46897 * 89.99768 * 19 17 15 21 21 H 1.48500 * 109.46979 * 209.99793 * 19 17 15 22 22 H 1.48497 * 109.47104 * 329.99700 * 19 17 15 23 23 C 1.52914 * 113.66014 * 196.25666 * 9 8 6 24 24 C 1.52910 * 121.13989 * 94.90251 * 23 9 8 25 25 C 1.53952 * 86.78057 * 209.37336 * 24 23 9 26 26 C 1.52908 * 121.13850 * 346.33539 * 23 9 8 27 27 C 1.53004 * 117.50440 * 175.62862 * 5 4 2 28 28 C 1.52997 * 117.50306 * 107.00294 * 5 4 2 29 29 H 1.09000 * 109.46905 * 296.04726 * 1 2 3 30 30 H 1.08999 * 109.46921 * 56.04518 * 1 2 3 31 31 H 1.08998 * 109.47172 * 176.04616 * 1 2 3 32 32 H 1.08995 * 109.46897 * 187.74709 * 3 2 1 33 33 H 1.08994 * 109.47086 * 307.74453 * 3 2 1 34 34 H 1.09000 * 109.46825 * 67.74789 * 3 2 1 35 35 H 1.09002 * 109.47368 * 44.64827 * 4 2 1 36 36 H 1.09003 * 109.47147 * 284.64932 * 4 2 1 37 37 H 0.96997 * 120.00317 * 4.85479 * 8 6 5 38 38 H 1.08989 * 113.58273 * 253.81105 * 11 9 8 39 39 H 1.09009 * 113.57846 * 24.52663 * 11 9 8 40 40 H 0.96999 * 120.00283 * 75.49557 * 14 12 11 41 41 H 0.96997 * 120.00143 * 180.02562 * 18 17 15 42 42 H 1.08994 * 113.66176 * 323.84819 * 24 23 9 43 43 H 1.08999 * 113.65704 * 94.90866 * 24 23 9 44 44 H 1.09003 * 113.58216 * 270.13686 * 25 24 23 45 45 H 1.08999 * 113.57932 * 139.33419 * 25 24 23 46 46 H 1.08996 * 113.66205 * 265.10314 * 26 23 9 47 47 H 1.09001 * 113.66297 * 36.15954 * 26 23 9 48 48 H 1.08993 * 117.49948 * 145.01686 * 27 5 4 49 49 H 1.09005 * 117.49117 * 359.97438 * 27 5 4 50 50 H 1.09004 * 117.49536 * 0.02562 * 28 5 4 51 51 H 1.09001 * 117.52397 * 214.97271 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.9954 -0.7660 1.1376 5 6 3.4768 -1.0702 0.9059 6 6 3.8564 -1.4119 -0.5119 7 8 4.2362 -0.5402 -1.2649 8 7 3.7738 -2.6861 -0.9433 9 6 4.2428 -3.0367 -2.2862 10 1 4.1063 -2.2303 -3.0068 11 6 5.6540 -3.6516 -2.3069 12 6 5.1286 -4.6400 -3.3639 13 1 5.2406 -4.2853 -4.3884 14 7 5.6124 -6.0104 -3.1792 15 6 6.5913 -6.5071 -3.9979 16 1 7.0063 -5.8886 -4.7800 17 6 7.0494 -7.8058 -3.8233 18 7 6.5432 -8.5596 -2.8705 19 14 8.3842 -8.4834 -4.9407 20 1 9.7163 -8.1985 -4.3495 21 1 8.2105 -9.9511 -5.0855 22 1 8.2868 -7.8394 -6.2752 23 6 3.7379 -4.3939 -2.7777 24 6 2.4834 -4.5040 -3.6451 25 6 2.2784 -5.8956 -3.0195 26 6 3.0969 -5.3947 -1.8157 27 6 4.2376 -1.7758 2.0304 28 6 4.4966 -0.2955 1.7429 29 1 -0.3633 0.4513 0.9233 30 1 -0.3633 0.5740 -0.8524 31 1 -0.3633 -1.0252 -0.0709 32 1 3.0763 1.3457 -0.1385 33 1 1.5385 1.9361 -0.8126 34 1 1.7624 1.8501 0.9511 35 1 1.4431 -1.7008 1.2330 36 1 1.8830 -0.1827 2.0516 37 1 3.4039 -3.3710 -0.3646 38 1 6.4192 -2.9742 -2.6858 39 1 5.9369 -4.1258 -1.3671 40 1 5.2394 -6.5660 -2.4770 41 1 6.8636 -9.4669 -2.7482 42 1 1.7055 -3.7872 -3.3821 43 1 2.6922 -4.5316 -4.7145 44 1 2.7647 -6.6987 -3.5735 45 1 1.2386 -6.1164 -2.7783 46 1 3.7956 -6.1337 -1.4236 47 1 2.4912 -4.9283 -1.0386 48 1 5.0125 -2.4870 1.7446 49 1 3.6826 -2.0228 2.9355 50 1 4.1120 0.4307 2.4591 51 1 5.4421 -0.0328 1.2686 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001203310241.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:06 Heat of formation + Delta-G solvation = 54.491626 kcal Electronic energy + Delta-G solvation = -28616.294136 eV Core-core repulsion = 24939.407144 eV Total energy + Delta-G solvation = -3676.886992 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 321.216 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.63191 -39.62128 -37.42555 -35.94817 -34.75331 -33.97496 -32.26463 -29.81733 -28.19444 -27.71038 -25.44898 -25.04924 -24.11131 -23.49329 -22.64033 -22.34091 -21.29187 -20.35968 -19.36232 -17.85688 -17.17930 -16.67912 -16.04520 -15.80400 -15.48049 -15.38715 -14.95860 -14.63409 -14.50805 -14.27760 -13.83764 -13.74495 -13.01621 -12.80049 -12.77446 -12.52052 -12.37525 -12.16404 -12.08578 -12.01573 -11.77284 -11.74665 -11.70677 -11.45983 -11.19622 -10.88913 -10.78345 -10.72329 -10.61628 -10.26394 -10.15728 -10.00349 -9.80438 -9.72199 -9.45592 -9.32006 -8.82509 -8.55092 -8.49092 -6.94570 -5.78496 -3.06338 2.92918 3.22462 3.43568 3.49149 3.50247 3.53881 3.75669 4.49659 4.57894 4.59153 4.69687 4.86699 4.93092 4.98261 5.02131 5.08566 5.12792 5.21262 5.25940 5.29602 5.30803 5.40008 5.45863 5.48653 5.50535 5.62871 5.63652 5.72060 5.74193 5.89594 5.95315 5.95704 6.02104 6.02966 6.05510 6.12467 6.31476 6.36868 6.46446 6.56605 6.66114 6.76939 6.80056 6.83823 6.90569 7.00489 7.15611 7.71296 7.87131 8.40716 8.57201 9.52358 10.09641 10.44812 11.43966 Molecular weight = 321.22amu Principal moments of inertia in cm(-1) A = 0.019720 B = 0.003113 C = 0.002943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1419.527802 B = 8992.198828 C = 9512.283298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.540 5.540 3 C 0.027 3.973 4 C 0.101 3.899 5 C -0.151 4.151 6 C 0.569 3.431 7 O -0.536 6.536 8 N -0.708 5.708 9 C 0.135 3.865 10 H 0.105 0.895 11 C -0.174 4.174 12 C 0.192 3.808 13 H 0.079 0.921 14 N -0.707 5.707 15 C -0.241 4.241 16 H 0.071 0.929 17 C -0.012 4.012 18 N -0.933 5.933 19 Si 0.906 3.094 20 H -0.290 1.290 21 H -0.292 1.292 22 H -0.282 1.282 23 C -0.115 4.115 24 C -0.126 4.126 25 C -0.131 4.131 26 C -0.116 4.116 27 C -0.163 4.163 28 C -0.149 4.149 29 H 0.022 0.978 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.082 0.918 33 H 0.063 0.937 34 H 0.019 0.981 35 H 0.080 0.920 36 H 0.043 0.957 37 H 0.396 0.604 38 H 0.058 0.942 39 H 0.078 0.922 40 H 0.386 0.614 41 H 0.255 0.745 42 H 0.072 0.928 43 H 0.066 0.934 44 H 0.089 0.911 45 H 0.056 0.944 46 H 0.078 0.922 47 H 0.070 0.930 48 H 0.104 0.896 49 H 0.102 0.898 50 H 0.098 0.902 51 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.655 15.540 10.433 22.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.264 5.264 3 C -0.121 4.121 4 C -0.027 4.027 5 C -0.155 4.155 6 C 0.354 3.646 7 O -0.412 6.412 8 N -0.358 5.358 9 C 0.031 3.969 10 H 0.123 0.877 11 C -0.216 4.216 12 C 0.079 3.921 13 H 0.097 0.903 14 N -0.346 5.346 15 C -0.372 4.372 16 H 0.089 0.911 17 C -0.208 4.208 18 N -0.581 5.581 19 Si 0.737 3.263 20 H -0.218 1.218 21 H -0.218 1.218 22 H -0.207 1.207 23 C -0.117 4.117 24 C -0.163 4.163 25 C -0.168 4.168 26 C -0.153 4.153 27 C -0.201 4.201 28 C -0.186 4.186 29 H 0.041 0.959 30 H 0.087 0.913 31 H 0.086 0.914 32 H 0.101 0.899 33 H 0.082 0.918 34 H 0.037 0.963 35 H 0.099 0.901 36 H 0.062 0.938 37 H 0.231 0.769 38 H 0.076 0.924 39 H 0.097 0.903 40 H 0.222 0.778 41 H 0.065 0.935 42 H 0.091 0.909 43 H 0.084 0.916 44 H 0.108 0.892 45 H 0.074 0.926 46 H 0.096 0.904 47 H 0.088 0.912 48 H 0.122 0.878 49 H 0.120 0.880 50 H 0.117 0.883 51 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -12.081 15.854 9.291 21.992 hybrid contribution 0.156 -0.497 0.785 0.943 sum -11.925 15.357 10.077 21.899 Atomic orbital electron populations 1.22384 0.87261 1.02269 1.00334 1.61827 1.07479 1.14680 1.42391 1.22429 1.02499 0.87834 0.99337 1.21549 0.91254 0.98322 0.91618 1.21493 0.94593 1.07683 0.91719 1.19007 0.76387 0.82333 0.86892 1.90636 1.46951 1.47506 1.56137 1.45869 1.63782 1.09143 1.16991 1.22196 0.95620 0.95606 0.83520 0.87734 1.24261 0.95372 0.99709 1.02257 1.21067 0.88741 0.86602 0.95704 0.90313 1.42338 1.44163 1.09053 1.39012 1.19305 1.11988 0.95966 1.09953 0.91092 1.24724 1.00285 0.96765 0.99009 1.69650 1.45523 1.08911 1.34037 0.86204 0.81818 0.78083 0.80180 1.21759 1.21839 1.20739 1.23495 0.96138 0.94085 0.98024 1.22707 0.97066 0.97196 0.99377 1.22739 0.98965 0.97474 0.97626 1.22417 0.98683 0.98130 0.96117 1.23131 1.02540 0.95977 0.98446 1.23031 0.99943 0.94576 1.01080 0.95913 0.91280 0.91367 0.89901 0.91804 0.96269 0.90136 0.93843 0.76889 0.92353 0.90328 0.77783 0.93520 0.90901 0.91570 0.89201 0.92569 0.90351 0.91186 0.87779 0.87994 0.88313 0.88099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 9.54 60.07 0.57 0.79 16 2 N -0.54 -5.78 4.28 -251.26 -1.07 -6.85 16 3 C 0.03 0.28 9.39 60.07 0.56 0.84 16 4 C 0.10 0.94 5.06 -3.83 -0.02 0.92 16 5 C -0.15 -1.61 1.43 -155.66 -0.22 -1.83 16 6 C 0.57 8.15 6.24 -10.99 -0.07 8.08 16 7 O -0.54 -9.60 15.79 5.55 0.09 -9.51 16 8 N -0.71 -9.76 5.34 -53.36 -0.29 -10.05 16 9 C 0.14 2.15 4.03 -67.48 -0.27 1.87 16 10 H 0.10 1.79 7.63 -51.93 -0.40 1.39 16 11 C -0.17 -3.15 7.68 -25.75 -0.20 -3.35 16 12 C 0.19 3.77 4.35 -67.48 -0.29 3.47 16 13 H 0.08 1.58 8.12 -51.93 -0.42 1.16 16 14 N -0.71 -17.04 5.35 -52.98 -0.28 -17.32 16 15 C -0.24 -6.55 9.98 -15.06 -0.15 -6.71 16 16 H 0.07 1.89 7.83 -52.48 -0.41 1.48 16 17 C -0.01 -0.34 5.50 -17.43 -0.10 -0.43 16 18 N -0.93 -27.50 13.06 55.49 0.72 -26.78 16 19 Si 0.91 22.21 29.55 -169.99 -5.02 17.19 16 20 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 21 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 22 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 23 C -0.12 -1.85 1.06 -154.71 -0.16 -2.01 16 24 C -0.13 -1.87 7.84 -26.28 -0.21 -2.08 16 25 C -0.13 -2.00 8.08 -25.75 -0.21 -2.21 16 26 C -0.12 -1.76 6.80 -26.28 -0.18 -1.94 16 27 C -0.16 -1.44 9.95 -26.73 -0.27 -1.71 16 28 C -0.15 -1.42 9.76 -26.73 -0.26 -1.68 16 29 H 0.02 0.17 8.14 -51.93 -0.42 -0.26 16 30 H 0.07 0.56 8.08 -51.93 -0.42 0.14 16 31 H 0.07 0.54 8.09 -51.93 -0.42 0.12 16 32 H 0.08 1.03 6.49 -51.93 -0.34 0.69 16 33 H 0.06 0.63 8.06 -51.93 -0.42 0.21 16 34 H 0.02 0.17 8.04 -51.93 -0.42 -0.25 16 35 H 0.08 0.68 7.97 -51.93 -0.41 0.26 16 36 H 0.04 0.35 7.78 -51.93 -0.40 -0.05 16 37 H 0.40 4.83 6.79 -40.82 -0.28 4.55 16 38 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 39 H 0.08 1.50 8.14 -51.92 -0.42 1.08 16 40 H 0.39 9.76 5.87 -40.82 -0.24 9.52 16 41 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 42 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 43 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 44 H 0.09 1.62 8.14 -51.93 -0.42 1.20 16 45 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 46 H 0.08 1.38 6.43 -51.93 -0.33 1.05 16 47 H 0.07 0.89 6.86 -51.93 -0.36 0.53 16 48 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 49 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 50 H 0.10 0.77 8.08 -51.93 -0.42 0.35 16 51 H 0.10 1.10 8.14 -51.93 -0.42 0.67 16 LS Contribution 403.22 15.07 6.08 6.08 Total: -1.00 -30.98 403.22 -10.29 -41.27 By element: Atomic # 1 Polarization: 22.99 SS G_CDS: -9.05 Total: 13.94 kcal Atomic # 6 Polarization: -6.49 SS G_CDS: -1.47 Total: -7.96 kcal Atomic # 7 Polarization: -60.08 SS G_CDS: -0.92 Total: -61.00 kcal Atomic # 8 Polarization: -9.60 SS G_CDS: 0.09 Total: -9.51 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -30.98 -10.29 -41.27 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001203310241.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.761 kcal (2) G-P(sol) polarization free energy of solvation -30.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.270 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds