Wall clock time and date at job start Fri Apr 10 2020 18:25:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46904 * 111.00075 * 2 1 4 4 C 1.46901 * 110.99786 * 123.95372 * 2 1 3 5 5 C 1.52995 * 109.47242 * 164.65209 * 4 2 1 6 6 C 1.50700 * 115.56118 * 321.31750 * 5 4 2 7 7 O 1.21286 * 120.00261 * 92.83095 * 6 5 4 8 8 N 1.34777 * 120.00050 * 272.83450 * 6 5 4 9 9 C 1.46507 * 120.00185 * 184.86597 * 8 6 5 10 10 H 1.09005 * 112.87957 * 327.71926 * 9 8 6 11 11 C 1.53946 * 113.66658 * 99.06493 * 9 8 6 12 12 C 1.53955 * 87.29503 * 139.20656 * 11 9 8 13 13 H 1.08999 * 113.65827 * 89.73675 * 12 11 9 14 14 N 1.46499 * 113.66260 * 220.70269 * 12 11 9 15 15 C 1.36933 * 120.00006 * 255.49521 * 14 12 11 16 16 H 1.08006 * 119.99701 * 359.97438 * 15 14 12 17 17 C 1.38812 * 120.00355 * 180.02562 * 15 14 12 18 18 N 1.31618 * 119.99641 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00188 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.46897 * 89.99768 * 19 17 15 21 21 H 1.48500 * 109.46979 * 209.99793 * 19 17 15 22 22 H 1.48497 * 109.47104 * 329.99700 * 19 17 15 23 23 C 1.52914 * 113.66014 * 196.25666 * 9 8 6 24 24 C 1.52910 * 121.13989 * 94.90251 * 23 9 8 25 25 C 1.53952 * 86.78057 * 209.37336 * 24 23 9 26 26 C 1.52908 * 121.13850 * 346.33539 * 23 9 8 27 27 C 1.53004 * 117.50440 * 175.62862 * 5 4 2 28 28 C 1.52997 * 117.50306 * 107.00294 * 5 4 2 29 29 H 1.09000 * 109.46905 * 296.04726 * 1 2 3 30 30 H 1.08999 * 109.46921 * 56.04518 * 1 2 3 31 31 H 1.08998 * 109.47172 * 176.04616 * 1 2 3 32 32 H 1.08995 * 109.46897 * 187.74709 * 3 2 1 33 33 H 1.08994 * 109.47086 * 307.74453 * 3 2 1 34 34 H 1.09000 * 109.46825 * 67.74789 * 3 2 1 35 35 H 1.09002 * 109.47368 * 44.64827 * 4 2 1 36 36 H 1.09003 * 109.47147 * 284.64932 * 4 2 1 37 37 H 0.96997 * 120.00317 * 4.85479 * 8 6 5 38 38 H 1.08989 * 113.58273 * 253.81105 * 11 9 8 39 39 H 1.09009 * 113.57846 * 24.52663 * 11 9 8 40 40 H 0.96999 * 120.00283 * 75.49557 * 14 12 11 41 41 H 0.96997 * 120.00143 * 180.02562 * 18 17 15 42 42 H 1.08994 * 113.66176 * 323.84819 * 24 23 9 43 43 H 1.08999 * 113.65704 * 94.90866 * 24 23 9 44 44 H 1.09003 * 113.58216 * 270.13686 * 25 24 23 45 45 H 1.08999 * 113.57932 * 139.33419 * 25 24 23 46 46 H 1.08996 * 113.66205 * 265.10314 * 26 23 9 47 47 H 1.09001 * 113.66297 * 36.15954 * 26 23 9 48 48 H 1.08993 * 117.49948 * 145.01686 * 27 5 4 49 49 H 1.09005 * 117.49117 * 359.97438 * 27 5 4 50 50 H 1.09004 * 117.49536 * 0.02562 * 28 5 4 51 51 H 1.09001 * 117.52397 * 214.97271 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.9954 -0.7660 1.1376 5 6 3.4768 -1.0702 0.9059 6 6 3.8564 -1.4119 -0.5119 7 8 4.2362 -0.5402 -1.2649 8 7 3.7738 -2.6861 -0.9433 9 6 4.2428 -3.0367 -2.2862 10 1 4.1063 -2.2303 -3.0068 11 6 5.6540 -3.6516 -2.3069 12 6 5.1286 -4.6400 -3.3639 13 1 5.2406 -4.2853 -4.3884 14 7 5.6124 -6.0104 -3.1792 15 6 6.5913 -6.5071 -3.9979 16 1 7.0063 -5.8886 -4.7800 17 6 7.0494 -7.8058 -3.8233 18 7 6.5432 -8.5596 -2.8705 19 14 8.3842 -8.4834 -4.9407 20 1 9.7163 -8.1985 -4.3495 21 1 8.2105 -9.9511 -5.0855 22 1 8.2868 -7.8394 -6.2752 23 6 3.7379 -4.3939 -2.7777 24 6 2.4834 -4.5040 -3.6451 25 6 2.2784 -5.8956 -3.0195 26 6 3.0969 -5.3947 -1.8157 27 6 4.2376 -1.7758 2.0304 28 6 4.4966 -0.2955 1.7429 29 1 -0.3633 0.4513 0.9233 30 1 -0.3633 0.5740 -0.8524 31 1 -0.3633 -1.0252 -0.0709 32 1 3.0763 1.3457 -0.1385 33 1 1.5385 1.9361 -0.8126 34 1 1.7624 1.8501 0.9511 35 1 1.4431 -1.7008 1.2330 36 1 1.8830 -0.1827 2.0516 37 1 3.4039 -3.3710 -0.3646 38 1 6.4192 -2.9742 -2.6858 39 1 5.9369 -4.1258 -1.3671 40 1 5.2394 -6.5660 -2.4770 41 1 6.8636 -9.4669 -2.7482 42 1 1.7055 -3.7872 -3.3821 43 1 2.6922 -4.5316 -4.7145 44 1 2.7647 -6.6987 -3.5735 45 1 1.2386 -6.1164 -2.7783 46 1 3.7956 -6.1337 -1.4236 47 1 2.4912 -4.9283 -1.0386 48 1 5.0125 -2.4870 1.7446 49 1 3.6826 -2.0228 2.9355 50 1 4.1120 0.4307 2.4591 51 1 5.4421 -0.0328 1.2686 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001203310241.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:05 Heat of formation + Delta-G solvation = 34.753084 kcal Electronic energy + Delta-G solvation = -28617.150064 eV Core-core repulsion = 24939.407144 eV Total energy + Delta-G solvation = -3677.742919 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 321.216 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.92419 -40.68915 -38.37766 -36.73675 -36.24641 -35.62640 -33.86335 -31.69948 -28.90099 -28.41187 -26.81205 -26.57697 -25.58790 -24.88732 -23.38405 -23.23789 -22.57473 -21.73723 -20.44659 -19.60894 -18.60242 -17.85118 -17.42381 -16.66019 -16.52312 -16.33875 -16.31191 -16.11333 -15.77258 -15.33255 -15.11136 -14.76672 -14.70084 -14.29231 -13.73949 -13.52537 -13.41483 -13.38579 -13.14796 -13.09845 -12.89333 -12.86678 -12.79123 -12.72978 -12.49434 -12.44958 -12.30687 -12.22316 -12.04469 -11.84289 -11.46315 -11.29005 -11.17601 -10.99686 -10.90839 -10.68499 -10.52738 -9.78659 -9.24549 -8.93989 -7.93357 -5.20104 1.47741 1.48398 1.56733 1.82432 2.23454 2.57340 2.67530 3.05929 3.37489 3.51184 3.62291 3.72244 3.78256 3.83931 3.91149 3.96777 4.02908 4.11492 4.15039 4.29752 4.32520 4.42572 4.56167 4.56347 4.58908 4.67215 4.72253 4.76025 4.78967 4.79668 4.80877 4.88280 4.95143 4.97712 5.03746 5.04489 5.10993 5.14297 5.15183 5.19278 5.22398 5.43020 5.52794 5.56213 5.65645 5.76693 6.09749 6.15621 6.29365 6.75318 7.36745 7.45079 8.12552 8.38146 9.29626 Molecular weight = 321.22amu Principal moments of inertia in cm(-1) A = 0.019720 B = 0.003113 C = 0.002943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1419.527802 B = 8992.198828 C = 9512.283298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.565 5.565 3 C 0.033 3.967 4 C 0.104 3.896 5 C -0.159 4.159 6 C 0.566 3.434 7 O -0.576 6.576 8 N -0.700 5.700 9 C 0.155 3.845 10 H 0.096 0.904 11 C -0.169 4.169 12 C 0.174 3.826 13 H 0.071 0.929 14 N -0.715 5.715 15 C -0.243 4.243 16 H 0.072 0.928 17 C -0.070 4.070 18 N -0.965 5.965 19 Si 0.967 3.033 20 H -0.290 1.290 21 H -0.295 1.295 22 H -0.272 1.272 23 C -0.106 4.106 24 C -0.116 4.116 25 C -0.129 4.129 26 C -0.108 4.108 27 C -0.147 4.147 28 C -0.151 4.151 29 H 0.036 0.964 30 H 0.066 0.934 31 H 0.073 0.927 32 H 0.057 0.943 33 H 0.061 0.939 34 H 0.035 0.965 35 H 0.094 0.906 36 H 0.062 0.938 37 H 0.407 0.593 38 H 0.049 0.951 39 H 0.068 0.932 40 H 0.379 0.621 41 H 0.251 0.749 42 H 0.097 0.903 43 H 0.059 0.941 44 H 0.055 0.945 45 H 0.084 0.916 46 H 0.051 0.949 47 H 0.105 0.895 48 H 0.092 0.908 49 H 0.132 0.868 50 H 0.121 0.879 51 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.529 16.449 11.881 24.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.289 5.289 3 C -0.115 4.115 4 C -0.024 4.024 5 C -0.162 4.162 6 C 0.353 3.647 7 O -0.455 6.455 8 N -0.350 5.350 9 C 0.049 3.951 10 H 0.113 0.887 11 C -0.211 4.211 12 C 0.063 3.937 13 H 0.089 0.911 14 N -0.354 5.354 15 C -0.375 4.375 16 H 0.089 0.911 17 C -0.262 4.262 18 N -0.616 5.616 19 Si 0.797 3.203 20 H -0.217 1.217 21 H -0.222 1.222 22 H -0.197 1.197 23 C -0.108 4.108 24 C -0.153 4.153 25 C -0.166 4.166 26 C -0.146 4.146 27 C -0.184 4.184 28 C -0.188 4.188 29 H 0.054 0.946 30 H 0.084 0.916 31 H 0.092 0.908 32 H 0.076 0.924 33 H 0.079 0.921 34 H 0.054 0.946 35 H 0.112 0.888 36 H 0.080 0.920 37 H 0.244 0.756 38 H 0.067 0.933 39 H 0.087 0.913 40 H 0.214 0.786 41 H 0.060 0.940 42 H 0.115 0.885 43 H 0.078 0.922 44 H 0.073 0.927 45 H 0.102 0.898 46 H 0.070 0.930 47 H 0.123 0.877 48 H 0.111 0.889 49 H 0.150 0.850 50 H 0.139 0.861 51 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -13.977 16.797 10.745 24.351 hybrid contribution 0.757 -0.693 0.314 1.073 sum -13.220 16.104 11.059 23.588 Atomic orbital electron populations 1.22384 0.85936 1.02748 1.00928 1.61801 1.08831 1.14747 1.43527 1.22305 1.00847 0.88263 1.00128 1.21607 0.89911 0.99058 0.91854 1.21443 0.95990 1.09206 0.89590 1.19668 0.75176 0.81642 0.88210 1.90620 1.48626 1.48580 1.57697 1.45757 1.63513 1.09612 1.16167 1.21782 0.93652 0.95058 0.84634 0.88656 1.24104 0.96810 0.99156 1.01002 1.21301 0.91687 0.84765 0.95936 0.91075 1.42415 1.43901 1.10594 1.38506 1.19651 1.12040 0.96052 1.09769 0.91051 1.25441 1.02766 0.97285 1.00733 1.69790 1.47096 1.08923 1.35786 0.85231 0.79173 0.77038 0.78872 1.21726 1.22161 1.19708 1.23256 0.94807 0.94055 0.98654 1.22702 0.96558 0.97356 0.98724 1.22645 1.00180 0.96612 0.97192 1.22444 0.98305 0.97128 0.96678 1.23214 1.01658 0.95067 0.98462 1.23090 0.98838 0.95802 1.01083 0.94576 0.91552 0.90801 0.92386 0.92057 0.94620 0.88806 0.92011 0.75624 0.93250 0.91339 0.78621 0.94044 0.88471 0.92244 0.92652 0.89782 0.93009 0.87695 0.88944 0.85039 0.86084 0.90187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 9.54 127.69 1.22 1.61 16 2 N -0.57 -10.77 4.28 -948.85 -4.06 -14.82 16 3 C 0.03 0.63 9.39 127.69 1.20 1.83 16 4 C 0.10 1.59 5.06 86.30 0.44 2.03 16 5 C -0.16 -3.04 1.43 -52.93 -0.08 -3.12 16 6 C 0.57 15.63 6.24 87.66 0.55 16.18 16 7 O -0.58 -20.69 15.79 -3.05 -0.05 -20.74 16 8 N -0.70 -18.32 5.34 -441.13 -2.36 -20.67 16 9 C 0.15 4.82 4.03 45.28 0.18 5.00 16 10 H 0.10 3.23 7.63 -2.38 -0.02 3.22 16 11 C -0.17 -6.24 7.68 31.23 0.24 -6.00 16 12 C 0.17 6.98 4.35 45.29 0.20 7.18 16 13 H 0.07 2.93 8.12 -2.39 -0.02 2.91 16 14 N -0.72 -35.45 5.35 -321.55 -1.72 -37.17 16 15 C -0.24 -13.50 9.98 84.03 0.84 -12.66 16 16 H 0.07 3.87 7.83 -2.91 -0.02 3.84 16 17 C -0.07 -3.98 5.50 84.86 0.47 -3.51 16 18 N -0.97 -58.19 13.06 21.65 0.28 -57.90 16 19 Si 0.97 46.34 29.55 68.60 2.03 48.36 16 20 H -0.29 -13.76 7.11 99.48 0.71 -13.06 16 21 H -0.30 -14.17 7.11 99.48 0.71 -13.47 16 22 H -0.27 -12.44 7.11 99.48 0.71 -11.74 16 23 C -0.11 -3.32 1.06 -52.31 -0.06 -3.37 16 24 C -0.12 -3.24 7.84 30.89 0.24 -3.00 16 25 C -0.13 -3.77 8.08 31.23 0.25 -3.51 16 26 C -0.11 -3.12 6.80 30.89 0.21 -2.91 16 27 C -0.15 -2.19 9.95 30.60 0.30 -1.89 16 28 C -0.15 -2.61 9.76 30.59 0.30 -2.31 16 29 H 0.04 0.41 8.14 -2.39 -0.02 0.39 16 30 H 0.07 0.95 8.08 -2.39 -0.02 0.93 16 31 H 0.07 0.95 8.09 -2.39 -0.02 0.93 16 32 H 0.06 1.41 6.49 -2.39 -0.02 1.40 16 33 H 0.06 1.16 8.06 -2.39 -0.02 1.14 16 34 H 0.04 0.55 8.04 -2.39 -0.02 0.53 16 35 H 0.09 1.19 7.97 -2.39 -0.02 1.17 16 36 H 0.06 0.75 7.78 -2.39 -0.02 0.73 16 37 H 0.41 8.93 6.79 -92.71 -0.63 8.30 16 38 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 39 H 0.07 2.67 8.14 -2.38 -0.02 2.65 16 40 H 0.38 19.77 5.87 -92.71 -0.54 19.23 16 41 H 0.25 14.70 8.31 -92.71 -0.77 13.93 16 42 H 0.10 2.32 8.14 -2.39 -0.02 2.30 16 43 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 44 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 45 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 46 H 0.05 1.82 6.43 -2.39 -0.02 1.80 16 47 H 0.10 2.31 6.86 -2.39 -0.02 2.30 16 48 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 49 H 0.13 1.23 8.14 -2.38 -0.02 1.21 16 50 H 0.12 1.53 8.08 -2.38 -0.02 1.51 16 51 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 Total: -1.00 -68.74 403.22 0.37 -68.37 By element: Atomic # 1 Polarization: 43.30 SS G_CDS: -0.26 Total: 43.04 kcal Atomic # 6 Polarization: -14.96 SS G_CDS: 6.50 Total: -8.46 kcal Atomic # 7 Polarization: -122.71 SS G_CDS: -7.85 Total: -130.57 kcal Atomic # 8 Polarization: -20.69 SS G_CDS: -0.05 Total: -20.74 kcal Atomic # 14 Polarization: 46.34 SS G_CDS: 2.03 Total: 48.36 kcal Total: -68.74 0.37 -68.37 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001203310241.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.122 kcal (2) G-P(sol) polarization free energy of solvation -68.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.369 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds