Wall clock time and date at job start Fri Apr 10 2020 18:25:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86802 * 120.00132 * 2 1 4 4 H 1.48501 * 109.47199 * 269.99811 * 3 2 1 5 5 H 1.48499 * 109.47108 * 29.99548 * 3 2 1 6 6 H 1.48494 * 109.47445 * 149.99592 * 3 2 1 7 7 C 1.38804 * 120.00179 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99491 * 0.02562 * 7 2 1 9 9 S 1.76197 * 120.00014 * 179.97438 * 7 2 1 10 10 C 1.81002 * 99.99885 * 180.02562 * 9 7 2 11 11 C 1.50700 * 109.47154 * 180.02562 * 10 9 7 12 12 O 1.21287 * 119.99887 * 359.97438 * 11 10 9 13 13 N 1.34774 * 120.00111 * 180.02562 * 11 10 9 14 14 N 1.40097 * 120.00228 * 179.97438 * 13 11 10 15 15 C 1.34774 * 120.00228 * 179.97438 * 14 13 11 16 16 O 1.21455 * 120.00088 * 359.97438 * 15 14 13 17 17 C 1.48603 * 120.00251 * 179.97438 * 15 14 13 18 18 N 1.33491 * 120.56849 * 0.02562 * 17 15 14 19 19 C 1.30790 * 122.67669 * 180.02562 * 18 17 15 20 20 N 1.34141 * 123.17686 * 359.97438 * 19 18 17 21 21 H 0.97001 * 120.20569 * 180.02562 * 20 19 18 22 22 C 1.36394 * 119.57798 * 359.97438 * 20 19 18 23 23 N 1.32187 * 136.54387 * 179.97438 * 22 20 19 24 24 C 1.32851 * 108.96896 * 179.97438 * 23 22 20 25 25 N 1.31690 * 111.46975 * 0.02562 * 24 23 22 26 26 C 1.33954 * 108.44713 * 359.97438 * 25 24 23 27 27 H 0.97001 * 120.00174 * 0.02562 * 1 2 3 28 28 H 1.08990 * 109.47206 * 60.00227 * 10 9 7 29 29 H 1.09005 * 109.47224 * 300.00212 * 10 9 7 30 30 H 0.97000 * 120.00163 * 359.97438 * 13 11 10 31 31 H 0.97003 * 120.00167 * 359.97438 * 14 13 11 32 32 H 1.08003 * 118.41091 * 180.02562 * 19 18 17 33 33 H 1.07998 * 124.26640 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4979 2.0464 -1.4001 5 1 1.4477 2.6527 0.6999 6 1 3.5478 1.4402 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 1.4702 -2.1374 0.0005 9 16 3.7723 -1.2020 -0.0001 10 6 4.0866 -2.9845 0.0001 11 6 5.5731 -3.2325 0.0002 12 8 6.3441 -2.2962 -0.0003 13 7 6.0457 -4.4946 -0.0001 14 7 7.4276 -4.7252 -0.0005 15 6 7.9002 -5.9873 -0.0003 16 8 7.1282 -6.9249 0.0007 17 6 9.3660 -6.2319 -0.0013 18 7 10.2248 -5.2099 -0.0020 19 6 11.5219 -5.3776 -0.0034 20 7 12.1060 -6.5851 -0.0038 21 1 13.0731 -6.6594 -0.0045 22 6 11.3313 -7.7077 -0.0022 23 7 11.5346 -9.0139 -0.0025 24 6 10.3596 -9.6338 0.0004 25 7 9.3614 -8.7748 0.0020 26 6 9.8690 -7.5351 0.0008 27 1 -0.4850 0.8400 -0.0004 28 1 3.6434 -3.4317 -0.8895 29 1 3.6440 -3.4314 0.8904 30 1 5.4291 -5.2435 0.0000 31 1 8.0443 -3.9764 -0.0010 32 1 12.1533 -4.5013 -0.0034 33 1 10.2383 -10.7069 0.0013 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001303433097.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:24 Heat of formation + Delta-G solvation = 88.213985 kcal Electronic energy + Delta-G solvation = -22742.022720 eV Core-core repulsion = 18932.885373 eV Total energy + Delta-G solvation = -3809.137348 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 322.063 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.94416 -40.49440 -39.96592 -38.89265 -35.91361 -35.42989 -32.48129 -32.03749 -31.71235 -30.85722 -28.92154 -26.24236 -25.64090 -24.67547 -22.71510 -21.74164 -21.38712 -19.48401 -18.97829 -18.08212 -17.92654 -17.75488 -16.87019 -16.76494 -16.20289 -15.71240 -15.50309 -15.03567 -14.83155 -14.63619 -14.32435 -14.07895 -14.07628 -13.60994 -12.84009 -12.74773 -12.42604 -11.57669 -11.33538 -11.32298 -11.26040 -11.04656 -10.77462 -10.52466 -10.10540 -9.98415 -9.83563 -9.69411 -9.11604 -9.04572 -8.59146 -8.47248 -6.98917 -6.32370 -4.05776 -1.09501 0.62124 1.37270 1.47169 2.00215 2.66032 2.74371 2.80244 2.89688 3.12732 3.18942 3.29680 3.43744 3.46032 3.51216 3.94317 3.95122 4.21019 4.28926 4.51382 4.70206 4.78122 5.06403 5.13223 5.38179 5.63319 5.72601 5.91014 6.23764 6.33218 6.43215 6.45360 6.70501 7.36661 7.64821 7.67328 7.90429 8.28947 8.39174 9.12900 10.76721 Molecular weight = 322.06amu Principal moments of inertia in cm(-1) A = 0.036988 B = 0.002228 C = 0.002104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 756.815829 B =12563.098557 C =13304.770663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.878 5.878 2 C 0.096 3.904 3 Si 0.857 3.143 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.235 1.235 7 C -0.524 4.524 8 H 0.091 0.909 9 S -0.132 6.132 10 C -0.116 4.116 11 C 0.535 3.465 12 O -0.514 6.514 13 N -0.526 5.526 14 N -0.496 5.496 15 C 0.559 3.441 16 O -0.489 6.489 17 C 0.227 3.773 18 N -0.497 5.497 19 C 0.355 3.645 20 N -0.502 5.502 21 H 0.434 0.566 22 C 0.245 3.755 23 N -0.539 5.539 24 C 0.260 3.740 25 N -0.482 5.482 26 C 0.008 3.992 27 H 0.271 0.729 28 H 0.106 0.894 29 H 0.106 0.894 30 H 0.433 0.567 31 H 0.441 0.559 32 H 0.234 0.766 33 H 0.213 0.787 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.844 -13.012 0.074 30.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.514 5.514 2 C -0.113 4.113 3 Si 0.681 3.319 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.159 1.159 7 C -0.671 4.671 8 H 0.109 0.891 9 S 0.094 5.906 10 C -0.268 4.268 11 C 0.321 3.679 12 O -0.387 6.387 13 N -0.278 5.278 14 N -0.244 5.244 15 C 0.341 3.659 16 O -0.359 6.359 17 C 0.087 3.913 18 N -0.218 5.218 19 C 0.072 3.928 20 N -0.104 5.104 21 H 0.274 0.726 22 C -0.019 4.019 23 N -0.264 5.264 24 C -0.031 4.031 25 N -0.199 5.199 26 C -0.130 4.130 27 H 0.081 0.919 28 H 0.124 0.876 29 H 0.125 0.875 30 H 0.276 0.724 31 H 0.285 0.715 32 H 0.250 0.750 33 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges 27.804 -12.003 0.077 30.284 hybrid contribution 0.206 -0.679 -0.034 0.711 sum 28.009 -12.682 0.042 30.747 Atomic orbital electron populations 1.69933 1.05902 1.27838 1.47713 1.24709 0.94459 0.98967 0.93155 0.86741 0.81857 0.83328 0.79936 1.19176 1.19888 1.15919 1.22304 0.88006 0.97702 1.59133 0.89124 1.84798 1.09618 0.98703 1.97491 1.23221 0.91439 1.05311 1.06840 1.20695 0.91286 0.80448 0.75428 1.90731 1.58307 1.41557 1.48069 1.45175 0.94618 1.09869 1.78185 1.44560 0.97530 1.08785 1.73559 1.17591 0.86106 0.82339 0.79908 1.90927 1.55517 1.41718 1.47771 1.20718 0.93129 0.86769 0.90649 1.67960 1.01490 1.32025 1.20287 1.25065 0.91119 0.86728 0.89851 1.41886 1.12741 1.04115 1.51652 0.72632 1.21869 0.89939 0.89106 1.00951 1.70376 1.30301 0.99952 1.25821 1.25886 0.82362 1.01045 0.93767 1.70988 1.31958 0.97146 1.19853 1.21827 0.90219 0.94256 1.06662 0.91858 0.87579 0.87541 0.72424 0.71499 0.75043 0.77067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.02 13.97 55.49 0.78 -25.24 16 2 C 0.10 2.75 5.50 -17.43 -0.10 2.65 16 3 Si 0.86 21.14 27.74 -169.99 -4.71 16.42 16 4 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 6 H -0.24 -5.74 6.74 56.52 0.38 -5.36 16 7 C -0.52 -14.63 10.04 30.94 0.31 -14.32 16 8 H 0.09 2.64 8.03 -52.48 -0.42 2.22 16 9 S -0.13 -3.18 18.55 -107.50 -1.99 -5.17 16 10 C -0.12 -2.11 6.16 36.01 0.22 -1.89 16 11 C 0.54 8.94 7.96 -10.99 -0.09 8.86 16 12 O -0.51 -10.04 15.70 5.55 0.09 -9.95 16 13 N -0.53 -7.23 6.26 31.22 0.20 -7.03 16 14 N -0.50 -6.27 6.25 30.70 0.19 -6.08 16 15 C 0.56 7.31 7.95 -11.98 -0.10 7.21 16 16 O -0.49 -7.87 16.12 5.41 0.09 -7.78 16 17 C 0.23 2.41 6.83 -82.32 -0.56 1.85 16 18 N -0.50 -3.30 9.57 -10.63 -0.10 -3.40 16 19 C 0.36 0.66 12.25 -90.95 -1.11 -0.46 16 20 N -0.50 -1.35 5.30 -12.12 -0.06 -1.42 16 21 H 0.43 -0.56 8.93 -40.82 -0.36 -0.93 16 22 C 0.24 2.11 8.74 -154.36 -1.35 0.77 16 23 N -0.54 -5.51 11.29 -12.19 -0.14 -5.65 16 24 C 0.26 2.77 12.80 -91.33 -1.17 1.60 16 25 N -0.48 -6.56 10.90 -11.04 -0.12 -6.68 16 26 C 0.01 0.09 7.03 -82.74 -0.58 -0.49 16 27 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 28 H 0.11 1.77 8.14 -51.92 -0.42 1.34 16 29 H 0.11 1.77 8.14 -51.91 -0.42 1.35 16 30 H 0.43 5.33 8.00 -182.60 -1.46 3.87 16 31 H 0.44 5.18 7.39 -182.60 -1.35 3.83 16 32 H 0.23 -0.97 8.06 -52.48 -0.42 -1.39 16 33 H 0.21 1.45 8.06 -52.49 -0.42 1.03 16 LS Contribution 320.93 15.07 4.84 4.84 Total: -1.00 -40.59 320.93 -9.92 -50.52 By element: Atomic # 1 Polarization: 5.30 SS G_CDS: -4.44 Total: 0.86 kcal Atomic # 6 Polarization: 10.30 SS G_CDS: -4.52 Total: 5.78 kcal Atomic # 7 Polarization: -56.25 SS G_CDS: 0.74 Total: -55.51 kcal Atomic # 8 Polarization: -17.91 SS G_CDS: 0.17 Total: -17.73 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -4.71 Total: 16.42 kcal Atomic # 16 Polarization: -3.18 SS G_CDS: -1.99 Total: -5.17 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -40.59 -9.92 -50.52 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001303433097.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.732 kcal (2) G-P(sol) polarization free energy of solvation -40.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.518 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds