Wall clock time and date at job start Fri Apr 10 2020 18:25:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31403 * 1 3 3 Si 1.86801 * 120.00364 * 2 1 4 4 H 1.48497 * 109.47248 * 240.00059 * 3 2 1 5 5 H 1.48506 * 109.46919 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47329 * 119.99539 * 3 2 1 7 7 C 1.38956 * 120.00138 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00150 * 179.97438 * 7 2 1 9 9 N 1.37091 * 119.99721 * 0.02562 * 7 2 1 10 10 C 1.34781 * 119.99993 * 179.97438 * 9 7 2 11 11 O 1.21291 * 119.99724 * 359.97438 * 10 9 7 12 12 C 1.50696 * 119.99932 * 179.97438 * 10 9 7 13 13 N 1.46500 * 109.47007 * 180.02562 * 12 10 9 14 14 C 1.34780 * 119.99982 * 179.97438 * 13 12 10 15 15 S 1.71202 * 120.00145 * 0.02562 * 14 13 12 16 16 N 1.34781 * 120.00056 * 179.97438 * 14 13 12 17 17 C 1.39359 * 119.99888 * 185.53979 * 16 14 13 18 18 C 1.39156 * 119.93014 * 42.14562 * 17 16 14 19 19 C 1.37652 * 120.07392 * 180.02562 * 18 17 16 20 20 C 1.39758 * 119.92627 * 359.97438 * 19 18 17 21 21 C 1.47575 * 120.07260 * 180.02562 * 20 19 18 22 22 N 1.34780 * 120.00041 * 179.97438 * 21 20 19 23 23 O 1.21591 * 119.99775 * 0.02562 * 21 20 19 24 24 C 1.39771 * 119.85699 * 0.27758 * 20 19 18 25 25 C 1.37649 * 119.92082 * 359.44633 * 24 20 19 26 26 H 0.97005 * 120.00132 * 0.02562 * 1 2 3 27 27 H 0.96999 * 120.00204 * 359.97438 * 9 7 2 28 28 H 1.08999 * 109.47454 * 60.00102 * 12 10 9 29 29 H 1.09002 * 109.47330 * 299.99867 * 12 10 9 30 30 H 0.96997 * 120.00291 * 0.02562 * 13 12 10 31 31 H 0.96997 * 119.99358 * 5.54160 * 16 14 13 32 32 H 1.07997 * 119.96039 * 359.97438 * 18 17 16 33 33 H 1.08003 * 120.03254 * 179.97438 * 19 18 17 34 34 H 0.97001 * 120.00118 * 0.02562 * 22 21 20 35 35 H 0.96998 * 119.99465 * 179.72974 * 22 21 20 36 36 H 1.08001 * 120.03328 * 179.69778 * 24 20 19 37 37 H 1.08003 * 119.95629 * 180.27374 * 25 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1019 1.6963 -1.2125 5 1 1.2831 2.7465 0.0006 6 1 3.1018 1.6964 1.2125 7 6 2.0088 -1.2034 0.0005 8 1 3.0888 -1.2034 0.0001 9 7 1.3233 -2.3906 0.0005 10 6 1.9972 -3.5579 0.0005 11 8 3.2101 -3.5578 0.0001 12 6 1.2437 -4.8629 0.0011 13 7 2.1957 -5.9764 0.0016 14 6 1.7464 -7.2471 0.0027 15 16 0.0632 -7.5600 0.0028 16 7 2.6222 -8.2716 0.0026 17 6 2.1618 -9.5819 -0.1127 18 6 1.1498 -9.8850 -1.0184 19 6 0.6924 -11.1781 -1.1345 20 6 1.2460 -12.1872 -0.3418 21 6 0.7585 -13.5748 -0.4639 22 7 1.2938 -14.5469 0.3009 23 8 -0.1254 -13.8411 -1.2552 24 6 2.2588 -11.8785 0.5707 25 6 2.7155 -10.5844 0.6777 26 1 -0.4850 0.8401 -0.0004 27 1 0.3534 -2.3906 0.0005 28 1 0.6167 -4.9209 -0.8886 29 1 0.6174 -4.9205 0.8914 30 1 3.1493 -5.7993 0.0019 31 1 3.5729 -8.0968 0.0829 32 1 0.7221 -9.1046 -1.6304 33 1 -0.0934 -11.4125 -1.8373 34 1 1.9992 -14.3345 0.9319 35 1 0.9706 -15.4582 0.2234 36 1 2.6852 -12.6552 1.1882 37 1 3.5011 -10.3460 1.3795 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001321818260.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:51 Heat of formation + Delta-G solvation = -24.142978 kcal Electronic energy + Delta-G solvation = -22822.394609 eV Core-core repulsion = 19111.925442 eV Total energy + Delta-G solvation = -3710.469168 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 322.089 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.66695 -39.64077 -38.77435 -37.49714 -35.18098 -34.17928 -34.00219 -31.55617 -31.29279 -30.25777 -27.90556 -25.12256 -24.11817 -23.78780 -22.59605 -20.98117 -19.95967 -18.83847 -18.70913 -18.29676 -17.78807 -17.07480 -16.19656 -15.59027 -15.53241 -15.42869 -15.15638 -14.99996 -14.82327 -14.46922 -14.12498 -13.83807 -13.80185 -13.58768 -12.90753 -12.76459 -12.50377 -12.01577 -11.74058 -11.40940 -11.19761 -11.15896 -10.59757 -10.42324 -10.37140 -10.06264 -10.01595 -9.75601 -9.33236 -8.88403 -8.66794 -8.24717 -7.82172 -7.16183 -6.63392 -4.06534 0.37411 1.16065 1.35179 1.84278 2.38087 2.64223 3.04401 3.14930 3.17563 3.19460 3.37186 3.55789 3.63002 4.00024 4.45364 4.52227 4.60894 4.64258 5.00931 5.04531 5.09053 5.24068 5.56980 5.67563 5.71414 5.73622 5.86089 5.95932 6.01664 6.16162 6.37821 6.43193 6.52953 6.83459 6.99014 7.17520 7.34094 7.77398 7.94144 8.28346 8.90443 9.22868 9.69274 10.52554 Molecular weight = 322.09amu Principal moments of inertia in cm(-1) A = 0.045786 B = 0.002025 C = 0.001965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 611.395694 B =13820.988033 C =14247.053577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.029 3.971 3 Si 0.936 3.064 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.310 4.310 8 H 0.106 0.894 9 N -0.538 5.538 10 C 0.419 3.581 11 O -0.604 6.604 12 C 0.111 3.889 13 N -0.642 5.642 14 C 0.554 3.446 15 S -0.622 6.622 16 N -0.642 5.642 17 C 0.170 3.830 18 C -0.082 4.082 19 C -0.047 4.047 20 C -0.146 4.146 21 C 0.566 3.434 22 N -0.853 5.853 23 O -0.540 6.540 24 C -0.079 4.079 25 C -0.137 4.137 26 H 0.277 0.723 27 H 0.398 0.602 28 H 0.107 0.893 29 H 0.106 0.894 30 H 0.411 0.589 31 H 0.409 0.591 32 H 0.152 0.848 33 H 0.141 0.859 34 H 0.400 0.600 35 H 0.404 0.596 36 H 0.129 0.871 37 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.389 -22.634 1.892 23.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.175 4.175 3 Si 0.762 3.238 4 H -0.197 1.197 5 H -0.207 1.207 6 H -0.197 1.197 7 C -0.440 4.440 8 H 0.124 0.876 9 N -0.171 5.171 10 C 0.204 3.796 11 O -0.492 6.492 12 C -0.016 4.016 13 N -0.270 5.270 14 C 0.195 3.805 15 S -0.494 6.494 16 N -0.270 5.270 17 C 0.076 3.924 18 C -0.104 4.104 19 C -0.068 4.068 20 C -0.150 4.150 21 C 0.352 3.648 22 N -0.418 5.418 23 O -0.418 6.418 24 C -0.099 4.099 25 C -0.158 4.158 26 H 0.087 0.913 27 H 0.233 0.767 28 H 0.125 0.875 29 H 0.124 0.876 30 H 0.252 0.748 31 H 0.248 0.752 32 H 0.169 0.831 33 H 0.158 0.842 34 H 0.230 0.770 35 H 0.235 0.765 36 H 0.146 0.854 37 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 5.226 -22.408 1.335 23.048 hybrid contribution 1.794 1.001 0.568 2.131 sum 7.020 -21.407 1.903 22.609 Atomic orbital electron populations 1.69600 1.06040 1.28969 1.48073 1.25368 0.95696 1.00075 0.96354 0.85845 0.78816 0.79953 0.79210 1.19688 1.20697 1.19705 1.19682 0.93463 0.81841 1.48969 0.87633 1.41744 1.09667 1.04320 1.61388 1.19591 0.88201 0.84906 0.86864 1.90505 1.13627 1.86706 1.58371 1.21449 0.90768 0.83570 1.05857 1.44786 1.12415 1.02836 1.66918 1.22311 0.95415 0.81897 0.80924 1.93515 0.92052 1.90608 1.73177 1.42050 1.09158 1.03658 1.72115 1.17572 0.97526 0.81620 0.95727 1.21408 0.95191 0.96870 0.96900 1.21079 0.97895 0.90640 0.97197 1.19867 1.00300 0.93442 1.01361 1.18258 0.81279 0.85406 0.79831 1.43763 1.42564 1.11754 1.43676 1.90835 1.30518 1.83392 1.37030 1.20904 0.95711 0.96032 0.97254 1.20773 1.03004 0.92590 0.99455 0.91266 0.76743 0.87480 0.87566 0.74787 0.75216 0.83061 0.84152 0.77030 0.76546 0.85373 0.85112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -22.85 13.05 55.50 0.72 -22.13 16 2 C 0.03 0.73 5.50 -17.47 -0.10 0.64 16 3 Si 0.94 19.79 29.55 -169.99 -5.02 14.76 16 4 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 5 H -0.28 -5.85 7.11 56.52 0.40 -5.44 16 6 H -0.27 -5.72 7.11 56.52 0.40 -5.31 16 7 C -0.31 -8.06 9.68 -14.93 -0.14 -8.20 16 8 H 0.11 2.85 7.16 -52.49 -0.38 2.47 16 9 N -0.54 -12.58 5.29 -10.97 -0.06 -12.63 16 10 C 0.42 8.85 7.85 -10.99 -0.09 8.76 16 11 O -0.60 -14.31 15.24 5.55 0.08 -14.23 16 12 C 0.11 1.82 5.61 -5.20 -0.03 1.79 16 13 N -0.64 -9.00 5.53 -63.21 -0.35 -9.35 16 14 C 0.55 7.45 7.74 -86.91 -0.67 6.78 16 15 S -0.62 -10.54 25.06 -107.50 -2.69 -13.23 16 16 N -0.64 -6.38 5.30 -11.40 -0.06 -6.44 16 17 C 0.17 1.74 5.90 -83.76 -0.49 1.25 16 18 C -0.08 -0.95 7.82 -39.45 -0.31 -1.26 16 19 C -0.05 -0.53 9.58 -39.23 -0.38 -0.90 16 20 C -0.15 -1.40 5.88 -104.95 -0.62 -2.02 16 21 C 0.57 5.65 8.04 -12.45 -0.10 5.55 16 22 N -0.85 -4.57 8.82 30.47 0.27 -4.30 16 23 O -0.54 -7.64 17.17 5.29 0.09 -7.55 16 24 C -0.08 -0.56 9.53 -39.22 -0.37 -0.93 16 25 C -0.14 -1.06 9.95 -39.46 -0.39 -1.46 16 26 H 0.28 6.77 8.31 -40.82 -0.34 6.43 16 27 H 0.40 8.99 7.90 -40.82 -0.32 8.67 16 28 H 0.11 1.71 7.99 -51.93 -0.42 1.30 16 29 H 0.11 1.72 7.99 -51.93 -0.41 1.30 16 30 H 0.41 5.49 7.46 -40.82 -0.30 5.18 16 31 H 0.41 2.80 8.84 -40.82 -0.36 2.44 16 32 H 0.15 1.99 6.27 -50.00 -0.31 1.68 16 33 H 0.14 1.60 7.64 -52.48 -0.40 1.20 16 34 H 0.40 0.96 6.85 -40.82 -0.28 0.68 16 35 H 0.40 1.68 8.93 -40.82 -0.36 1.32 16 36 H 0.13 0.43 6.39 -52.49 -0.34 0.10 16 37 H 0.13 0.71 8.06 -52.48 -0.42 0.28 16 LS Contribution 339.20 15.07 5.11 5.11 Total: -1.00 -33.98 339.20 -9.04 -43.02 By element: Atomic # 1 Polarization: 20.42 SS G_CDS: -3.45 Total: 16.98 kcal Atomic # 6 Polarization: 13.68 SS G_CDS: -3.69 Total: 9.99 kcal Atomic # 7 Polarization: -55.38 SS G_CDS: 0.53 Total: -54.85 kcal Atomic # 8 Polarization: -21.96 SS G_CDS: 0.18 Total: -21.78 kcal Atomic # 14 Polarization: 19.79 SS G_CDS: -5.02 Total: 14.76 kcal Atomic # 16 Polarization: -10.54 SS G_CDS: -2.69 Total: -13.23 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -33.98 -9.04 -43.02 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321818260.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.878 kcal (2) G-P(sol) polarization free energy of solvation -33.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds