Wall clock time and date at job start Fri Apr 10 2020 18:25:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13595 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.44348 * 123.51013 * 350.00429 * 3 2 1 5 5 C 1.32512 * 114.30348 * 179.97438 * 4 3 2 6 6 S 1.75539 * 111.01092 * 359.97438 * 5 4 3 7 7 C 1.37293 * 123.50550 * 170.00269 * 3 2 1 8 8 N 1.38498 * 125.13201 * 359.97438 * 7 3 2 9 9 C 1.34778 * 119.99952 * 180.02562 * 8 7 3 10 10 O 1.21393 * 119.99804 * 0.02562 * 9 8 7 11 11 C 1.49276 * 119.99866 * 179.97438 * 9 8 7 12 12 O 1.21374 * 119.99794 * 0.02562 * 11 9 8 13 13 N 1.34778 * 119.99866 * 180.02562 * 11 9 8 14 14 C 1.46494 * 119.99711 * 180.02562 * 13 11 9 15 15 C 1.50702 * 109.46723 * 180.02562 * 14 13 11 16 16 O 1.21296 * 120.00323 * 359.97438 * 15 14 13 17 17 N 1.34785 * 119.99784 * 179.97438 * 15 14 13 18 18 C 1.37092 * 119.99690 * 180.02562 * 17 15 14 19 19 H 1.07998 * 120.00211 * 359.97438 * 18 17 15 20 20 C 1.38955 * 120.00017 * 180.02562 * 18 17 15 21 21 N 1.31410 * 120.00200 * 180.02562 * 20 18 17 22 22 Si 1.86801 * 119.99669 * 359.97438 * 20 18 17 23 23 H 1.48501 * 109.47057 * 90.00316 * 22 20 18 24 24 H 1.48500 * 109.47004 * 210.00285 * 22 20 18 25 25 H 1.48498 * 109.47185 * 330.00584 * 22 20 18 26 26 H 1.08005 * 122.85321 * 359.97438 * 4 3 2 27 27 H 1.08008 * 124.49540 * 180.26988 * 5 4 3 28 28 H 0.97005 * 119.99797 * 0.02562 * 8 7 3 29 29 H 0.97004 * 119.99662 * 0.02562 * 13 11 9 30 30 H 1.09005 * 109.46965 * 299.99414 * 14 13 11 31 31 H 1.08997 * 109.47653 * 59.99967 * 14 13 11 32 32 H 0.96995 * 120.00178 * 359.97438 * 17 15 14 33 33 H 0.96999 * 120.00201 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3655 -1.1843 0.2089 5 6 4.6734 -0.9750 0.1716 6 16 5.0317 0.7171 -0.1279 7 6 3.3254 1.1284 -0.1987 8 7 2.8203 2.3983 -0.4232 9 6 3.6614 3.4354 -0.6064 10 8 4.8616 3.2562 -0.5752 11 6 3.1170 4.8040 -0.8488 12 8 1.9169 4.9829 -0.8805 13 7 3.9581 5.8410 -1.0326 14 6 3.4238 7.1842 -1.2699 15 6 4.5636 8.1548 -1.4427 16 8 5.7095 7.7632 -1.3738 17 7 4.3097 9.4582 -1.6738 18 6 5.3466 10.3411 -1.8314 19 1 6.3668 9.9923 -1.7701 20 6 5.0849 11.6849 -2.0691 21 7 6.0788 12.5311 -2.2208 22 14 3.3201 12.2882 -2.1745 23 1 2.8536 12.6923 -0.8238 24 1 3.2495 13.4539 -3.0918 25 1 2.4543 11.1982 -2.6916 26 1 2.9329 -2.1588 0.3810 27 1 5.4200 -1.7444 0.3029 28 1 1.8612 2.5413 -0.4485 29 1 4.9172 5.6978 -1.0076 30 1 2.8126 7.1779 -2.1725 31 1 2.8132 7.4879 -0.4197 32 1 3.3934 9.7714 -1.7292 33 1 5.8961 13.4691 -2.3871 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001324969595.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:53 Heat of formation + Delta-G solvation = -54.090274 kcal Electronic energy + Delta-G solvation = -22659.191082 eV Core-core repulsion = 18811.590208 eV Total energy + Delta-G solvation = -3847.600874 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 322.057 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.32965 -40.73860 -39.86954 -39.15918 -37.13557 -36.54388 -36.07272 -35.32951 -33.84697 -30.61076 -29.86717 -27.23230 -26.09706 -24.57060 -22.52354 -21.69083 -21.54181 -20.84245 -20.32962 -19.53296 -18.37570 -17.58997 -17.56222 -17.26565 -16.87435 -16.56212 -16.52176 -16.08944 -15.59434 -15.54376 -15.21081 -14.98695 -14.92999 -14.36888 -14.33199 -14.07995 -13.80443 -13.77966 -13.59147 -13.27907 -12.97113 -12.97030 -12.44238 -12.19204 -12.00104 -11.82579 -11.58320 -10.99828 -10.69651 -10.53018 -10.32323 -9.46246 -9.28849 -8.45261 -6.07905 -0.68987 0.07880 0.22690 0.68779 1.06429 1.09175 1.31619 1.34865 1.45183 1.57583 1.74971 1.80515 2.15717 2.21334 2.39660 2.76048 2.95409 3.09549 3.10806 3.86197 3.93011 4.18786 4.31588 4.33785 4.57400 4.83094 4.85306 5.14240 5.21050 5.38464 5.47680 5.87615 5.91399 6.21099 6.39568 6.46281 6.58499 6.78124 7.27566 7.76922 8.71017 Molecular weight = 322.06amu Principal moments of inertia in cm(-1) A = 0.028852 B = 0.002327 C = 0.002156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.221413 B =12029.302465 C =12984.379067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.457 5.457 2 C 0.291 3.709 3 C -0.106 4.106 4 C -0.080 4.080 5 C -0.240 4.240 6 S 0.258 5.742 7 C 0.066 3.934 8 N -0.600 5.600 9 C 0.511 3.489 10 O -0.483 6.483 11 C 0.521 3.479 12 O -0.530 6.530 13 N -0.673 5.673 14 C 0.114 3.886 15 C 0.441 3.559 16 O -0.614 6.614 17 N -0.575 5.575 18 C -0.332 4.332 19 H 0.063 0.937 20 C -0.009 4.009 21 N -0.926 5.926 22 Si 0.960 3.040 23 H -0.257 1.257 24 H -0.276 1.276 25 H -0.228 1.228 26 H 0.176 0.824 27 H 0.206 0.794 28 H 0.434 0.566 29 H 0.422 0.578 30 H 0.122 0.878 31 H 0.123 0.877 32 H 0.394 0.606 33 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.988 -25.790 4.543 27.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.135 5.135 2 C -0.025 4.025 3 C -0.127 4.127 4 C -0.109 4.109 5 C -0.375 4.375 6 S 0.519 5.481 7 C -0.154 4.154 8 N -0.245 5.245 9 C 0.293 3.707 10 O -0.356 6.356 11 C 0.301 3.699 12 O -0.407 6.407 13 N -0.328 5.328 14 C -0.012 4.012 15 C 0.229 3.771 16 O -0.500 6.500 17 N -0.215 5.215 18 C -0.461 4.461 19 H 0.081 0.919 20 C -0.209 4.209 21 N -0.565 5.565 22 Si 0.780 3.220 23 H -0.181 1.181 24 H -0.201 1.201 25 H -0.151 1.151 26 H 0.193 0.807 27 H 0.223 0.777 28 H 0.275 0.725 29 H 0.262 0.738 30 H 0.140 0.860 31 H 0.141 0.859 32 H 0.230 0.770 33 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -7.524 -24.907 4.383 26.385 hybrid contribution -1.451 0.266 -0.044 1.476 sum -8.975 -24.641 4.339 26.582 Atomic orbital electron populations 1.81332 1.12778 1.07824 1.11557 1.25105 0.91843 0.93233 0.92296 1.16203 0.84603 0.93422 1.18501 1.20757 0.91772 0.97322 1.01012 1.26107 1.00382 1.01702 1.09334 1.85665 0.94680 1.00216 1.67536 1.22899 1.01210 0.86489 1.04785 1.42319 1.12199 1.03896 1.66067 1.20267 0.86348 0.86184 0.77937 1.90777 1.14610 1.83612 1.46616 1.19358 0.86349 0.85038 0.79182 1.90817 1.14522 1.84792 1.50570 1.45473 1.12193 1.06646 1.68483 1.21168 0.94107 0.79975 1.05992 1.20455 0.90441 0.83471 0.82759 1.90575 1.24326 1.78044 1.57065 1.41884 1.08475 1.06913 1.64178 1.19018 0.88692 0.89435 1.48923 0.91900 1.26102 1.04047 0.95117 0.95648 1.69783 1.34343 1.04684 1.47705 0.85435 0.77099 0.79765 0.79746 1.18105 1.20108 1.15144 0.80658 0.77663 0.72521 0.73793 0.86035 0.85934 0.77025 0.90923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -10.69 18.54 19.00 0.35 -10.34 16 2 C 0.29 5.37 15.02 88.33 1.33 6.70 16 3 C -0.11 -1.52 5.88 -20.70 -0.12 -1.64 16 4 C -0.08 -0.70 10.26 22.69 0.23 -0.46 16 5 C -0.24 -1.77 11.08 66.68 0.74 -1.03 16 6 S 0.26 3.58 20.31 -56.49 -1.15 2.43 16 7 C 0.07 1.08 7.17 83.42 0.60 1.68 16 8 N -0.60 -10.93 5.35 -306.49 -1.64 -12.57 16 9 C 0.51 11.21 7.84 87.22 0.68 11.89 16 10 O -0.48 -11.80 13.95 -3.38 -0.05 -11.85 16 11 C 0.52 12.83 7.88 87.22 0.69 13.51 16 12 O -0.53 -14.10 16.47 -3.32 -0.05 -14.16 16 13 N -0.67 -18.49 5.52 -468.32 -2.59 -21.07 16 14 C 0.11 3.18 6.15 85.63 0.53 3.71 16 15 C 0.44 17.89 7.85 87.66 0.69 18.58 16 16 O -0.61 -30.50 15.24 -3.08 -0.05 -30.55 16 17 N -0.57 -24.83 5.09 -306.97 -1.56 -26.39 16 18 C -0.33 -18.22 10.16 84.04 0.85 -17.36 16 19 H 0.06 4.12 7.39 -2.91 -0.02 4.10 16 20 C -0.01 -0.48 5.50 84.93 0.47 -0.01 16 21 N -0.93 -53.39 13.96 21.66 0.30 -53.08 16 22 Si 0.96 36.51 27.74 68.60 1.90 38.41 16 23 H -0.26 -9.30 7.11 99.48 0.71 -8.59 16 24 H -0.28 -10.57 7.11 99.48 0.71 -9.86 16 25 H -0.23 -7.19 6.52 99.48 0.65 -6.54 16 26 H 0.18 0.68 8.06 -2.91 -0.02 0.66 16 27 H 0.21 0.22 8.06 -2.91 -0.02 0.20 16 28 H 0.43 7.43 7.66 -92.70 -0.71 6.72 16 29 H 0.42 12.78 6.91 -92.71 -0.64 12.14 16 30 H 0.12 2.85 8.14 -2.38 -0.02 2.83 16 31 H 0.12 2.85 8.14 -2.39 -0.02 2.83 16 32 H 0.39 13.90 5.76 -92.71 -0.53 13.36 16 33 H 0.28 14.83 8.31 -92.71 -0.77 14.06 16 Total: -1.00 -73.15 326.12 1.45 -71.70 By element: Atomic # 1 Polarization: 32.60 SS G_CDS: -0.70 Total: 31.90 kcal Atomic # 6 Polarization: 28.89 SS G_CDS: 6.68 Total: 35.57 kcal Atomic # 7 Polarization: -118.32 SS G_CDS: -5.13 Total: -123.46 kcal Atomic # 8 Polarization: -56.40 SS G_CDS: -0.15 Total: -56.55 kcal Atomic # 14 Polarization: 36.51 SS G_CDS: 1.90 Total: 38.41 kcal Atomic # 16 Polarization: 3.58 SS G_CDS: -1.15 Total: 2.43 kcal Total: -73.15 1.45 -71.70 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324969595.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.610 kcal (2) G-P(sol) polarization free energy of solvation -73.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.700 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds