Wall clock time and date at job start Fri Apr 10 2020 18:26:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86807 * 119.99818 * 2 1 4 4 H 1.48501 * 109.46760 * 269.99834 * 3 2 1 5 5 H 1.48499 * 109.47002 * 29.99709 * 3 2 1 6 6 H 1.48498 * 109.47411 * 149.99613 * 3 2 1 7 7 C 1.37871 * 120.00512 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00330 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99510 * 0.02562 * 7 2 1 10 10 H 1.08998 * 109.47415 * 299.99705 * 9 7 2 11 11 N 1.46503 * 109.46796 * 180.02562 * 9 7 2 12 12 C 1.34778 * 119.99896 * 155.00219 * 11 9 7 13 13 O 1.21593 * 119.99956 * 359.97438 * 12 11 9 14 14 C 1.47525 * 119.99831 * 179.97438 * 12 11 9 15 15 C 1.36601 * 125.76849 * 179.97438 * 14 12 11 16 16 N 1.34811 * 106.83811 * 179.97438 * 15 14 12 17 17 C 1.46495 * 126.59602 * 180.02562 * 16 15 14 18 18 C 1.50698 * 109.47546 * 124.97404 * 17 16 15 19 19 O 1.20821 * 119.99789 * 0.02562 * 18 17 16 20 20 O 1.34232 * 120.00220 * 179.97438 * 18 17 16 21 21 N 1.40215 * 106.81108 * 0.02562 * 16 15 14 22 22 N 1.28756 * 108.36742 * 359.97438 * 21 16 15 23 23 C 1.52994 * 109.47323 * 60.00161 * 9 7 2 24 24 F 1.39897 * 109.47552 * 179.97438 * 23 9 7 25 25 F 1.39905 * 109.47148 * 299.99889 * 23 9 7 26 26 F 1.39904 * 109.47271 * 59.99508 * 23 9 7 27 27 H 0.97001 * 120.00182 * 0.02562 * 1 2 3 28 28 H 0.96997 * 120.00053 * 334.99761 * 11 9 7 29 29 H 1.07993 * 126.58084 * 359.96218 * 15 14 12 30 30 H 1.09002 * 109.47096 * 244.97589 * 17 16 15 31 31 H 1.08998 * 109.46976 * 4.96932 * 17 16 15 32 32 H 0.96694 * 116.99946 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4404 0.7001 7 6 2.0046 -1.1939 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2511 -2.4991 0.0005 10 1 0.6241 -2.5567 0.8903 11 7 2.2031 -3.6126 0.0018 12 6 1.8367 -4.8120 0.4953 13 8 0.7160 -4.9698 0.9399 14 6 2.7952 -5.9334 0.4960 15 6 2.5504 -7.1927 0.9651 16 7 3.6801 -7.9048 0.7803 17 6 3.8933 -9.3111 1.1309 18 6 4.3543 -10.0684 -0.0877 19 8 4.4911 -9.4924 -1.1409 20 8 4.6137 -11.3827 -0.0029 21 7 4.6119 -7.0405 0.1879 22 7 4.0569 -5.8888 0.0350 23 6 0.3720 -2.5805 -1.2490 24 9 -0.3271 -3.7923 -1.2493 25 9 -0.5372 -1.5171 -1.2496 26 9 1.1767 -2.5065 -2.3910 27 1 -0.4850 0.8400 -0.0004 28 1 3.0972 -3.4866 -0.3526 29 1 1.6288 -7.5494 1.4007 30 1 4.6522 -9.3802 1.9102 31 1 2.9596 -9.7406 1.4939 32 1 4.9071 -11.8253 -0.8110 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001574480596.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:11 Heat of formation + Delta-G solvation = -183.193426 kcal Electronic energy + Delta-G solvation = -27317.158281 eV Core-core repulsion = 22479.349462 eV Total energy + Delta-G solvation = -4837.808818 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.072 amu Computer time = 0.01 seconds Orbital eigenvalues (eV) -50.41491 -48.05133 -47.71976 -43.33381 -41.26502 -40.32018 -37.28064 -36.54143 -35.76931 -34.43992 -32.21470 -30.69064 -29.57560 -26.60900 -25.04698 -24.45388 -23.06754 -22.49875 -21.44106 -19.81765 -19.29611 -18.87207 -18.78574 -18.60501 -18.07513 -17.66984 -17.20357 -16.97691 -16.82798 -16.55001 -16.10700 -15.69636 -15.29963 -15.00686 -14.95145 -14.51362 -14.44994 -14.29034 -14.22652 -14.09173 -14.01051 -13.84831 -13.21629 -13.05778 -12.75682 -12.65969 -12.64508 -12.40290 -12.21583 -12.04845 -11.57143 -11.40616 -11.19358 -10.68660 -10.43768 -10.05644 -8.21019 -6.51322 0.02987 0.61022 0.84341 1.03928 1.47488 1.48852 1.59997 1.93072 2.10263 2.21572 2.40640 2.55683 2.94322 3.13687 3.43817 3.71180 3.80487 3.86422 3.93612 4.07945 4.09752 4.19400 4.32343 4.63234 4.91570 5.27747 5.34813 5.52496 5.53048 5.64741 6.52030 6.54951 6.83611 6.88981 7.12811 7.24260 8.71823 Molecular weight = 322.07amu Principal moments of inertia in cm(-1) A = 0.025145 B = 0.003199 C = 0.003055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1113.264613 B = 8749.846009 C = 9161.952428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.871 5.871 2 C 0.019 3.981 3 Si 0.982 3.018 4 H -0.275 1.275 5 H -0.278 1.278 6 H -0.259 1.259 7 C -0.565 4.565 8 H 0.087 0.913 9 C 0.253 3.747 10 H 0.060 0.940 11 N -0.696 5.696 12 C 0.595 3.405 13 O -0.561 6.561 14 C -0.121 4.121 15 C 0.128 3.872 16 N -0.355 5.355 17 C 0.127 3.873 18 C 0.472 3.528 19 O -0.543 6.543 20 O -0.498 6.498 21 N -0.066 5.066 22 N -0.225 5.225 23 C 0.413 3.587 24 F -0.217 7.217 25 F -0.148 7.148 26 F -0.206 7.206 27 H 0.270 0.730 28 H 0.413 0.587 29 H 0.252 0.748 30 H 0.178 0.822 31 H 0.202 0.798 32 H 0.435 0.565 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.226 -21.037 5.134 22.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.505 5.505 2 C -0.187 4.187 3 Si 0.805 3.195 4 H -0.201 1.201 5 H -0.203 1.203 6 H -0.183 1.183 7 C -0.601 4.601 8 H 0.105 0.895 9 C 0.146 3.854 10 H 0.078 0.922 11 N -0.345 5.345 12 C 0.380 3.620 13 O -0.439 6.439 14 C -0.260 4.260 15 C -0.028 4.028 16 N -0.141 5.141 17 C 0.007 3.993 18 C 0.313 3.687 19 O -0.433 6.433 20 O -0.312 6.312 21 N -0.046 5.046 22 N -0.099 5.099 23 C 0.357 3.643 24 F -0.199 7.199 25 F -0.129 7.129 26 F -0.188 7.188 27 H 0.080 0.920 28 H 0.249 0.751 29 H 0.268 0.732 30 H 0.195 0.805 31 H 0.219 0.781 32 H 0.298 0.702 Dipole moment (debyes) X Y Z Total from point charges 7.579 -20.610 4.957 22.512 hybrid contribution -0.379 0.522 -1.020 1.207 sum 7.200 -20.088 3.937 21.699 Atomic orbital electron populations 1.70504 1.07287 1.28247 1.44481 1.25938 0.95933 1.03458 0.93357 0.85180 0.78623 0.77242 0.78421 1.20106 1.20328 1.18335 1.21206 0.94439 0.88500 1.55990 0.89511 1.19433 0.88755 0.86949 0.90247 0.92228 1.45813 1.17335 1.09856 1.61492 1.17227 0.85662 0.81780 0.77300 1.90772 1.21091 1.83367 1.48681 1.21365 0.93774 0.96828 1.14022 1.23872 0.92916 0.89947 0.96078 1.50144 1.09787 1.11743 1.42444 1.21884 1.11223 0.72488 0.93733 1.23427 0.73648 0.81644 0.89957 1.90895 1.49382 1.70189 1.32794 1.84407 1.79011 1.21489 1.46277 1.81980 1.13172 0.93725 1.15759 1.74654 1.06898 1.15236 1.13137 1.23291 0.80807 0.72534 0.87654 1.93055 1.81534 1.48261 1.97006 1.93382 1.68827 1.54373 1.96301 1.92993 1.74254 1.96161 1.55362 0.92006 0.75104 0.73234 0.80503 0.78137 0.70217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -48.52 9.50 21.44 0.20 -48.32 16 2 C 0.02 0.99 5.20 84.65 0.44 1.43 16 3 Si 0.98 41.60 29.54 68.60 2.03 43.63 16 4 H -0.28 -11.59 7.11 99.48 0.71 -10.88 16 5 H -0.28 -11.48 7.11 99.48 0.71 -10.77 16 6 H -0.26 -10.48 7.11 99.48 0.71 -9.78 16 7 C -0.56 -29.69 8.46 25.60 0.22 -29.47 16 8 H 0.09 4.33 7.74 -2.91 -0.02 4.31 16 9 C 0.25 13.09 2.21 44.24 0.10 13.19 16 10 H 0.06 3.41 7.57 -2.39 -0.02 3.39 16 11 N -0.70 -31.04 4.98 -449.28 -2.24 -33.28 16 12 C 0.59 24.55 7.35 86.69 0.64 25.18 16 13 O -0.56 -25.43 15.44 -4.01 -0.06 -25.50 16 14 C -0.12 -3.99 6.99 40.82 0.29 -3.71 16 15 C 0.13 2.72 11.27 83.85 0.95 3.66 16 16 N -0.35 -6.71 3.41 -350.85 -1.20 -7.90 16 17 C 0.13 0.73 7.13 85.63 0.61 1.34 16 18 C 0.47 5.67 8.36 71.24 0.60 6.26 16 19 O -0.54 -13.30 16.49 21.98 0.36 -12.94 16 20 O -0.50 -2.53 13.42 -51.44 -0.69 -3.22 16 21 N -0.07 -1.95 12.89 37.02 0.48 -1.47 16 22 N -0.22 -7.74 12.04 -49.99 -0.60 -8.34 16 23 C 0.41 22.03 2.81 71.98 0.20 22.23 16 24 F -0.22 -11.28 15.68 44.97 0.70 -10.57 16 25 F -0.15 -8.41 12.91 44.97 0.58 -7.83 16 26 F -0.21 -10.69 16.94 44.97 0.76 -9.93 16 27 H 0.27 14.19 8.31 -92.71 -0.77 13.42 16 28 H 0.41 17.30 8.23 -92.71 -0.76 16.54 16 29 H 0.25 2.95 8.06 -2.91 -0.02 2.93 16 30 H 0.18 -0.10 8.14 -2.39 -0.02 -0.12 16 31 H 0.20 -0.91 8.08 -2.39 -0.02 -0.92 16 32 H 0.43 -0.39 9.10 -74.06 -0.67 -1.06 16 Total: -1.00 -82.65 309.58 4.17 -78.48 By element: Atomic # 1 Polarization: 7.25 SS G_CDS: -0.19 Total: 7.06 kcal Atomic # 6 Polarization: 36.09 SS G_CDS: 4.03 Total: 40.12 kcal Atomic # 7 Polarization: -95.96 SS G_CDS: -3.36 Total: -99.31 kcal Atomic # 8 Polarization: -41.26 SS G_CDS: -0.39 Total: -41.65 kcal Atomic # 9 Polarization: -30.37 SS G_CDS: 2.05 Total: -28.33 kcal Atomic # 14 Polarization: 41.60 SS G_CDS: 2.03 Total: 43.63 kcal Total: -82.65 4.17 -78.48 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001574480596.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.714 kcal (2) G-P(sol) polarization free energy of solvation -82.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -187.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -183.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.01 seconds