Wall clock time and date at job start Fri Apr 10 2020 18:26:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86797 * 120.00255 * 2 1 4 4 H 1.48500 * 109.47220 * 239.99736 * 3 2 1 5 5 H 1.48502 * 109.47312 * 359.97438 * 3 2 1 6 6 H 1.48506 * 109.47412 * 119.99868 * 3 2 1 7 7 C 1.38954 * 120.00075 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00261 * 180.02562 * 7 2 1 9 9 N 1.37098 * 119.99586 * 0.02562 * 7 2 1 10 10 C 1.34773 * 119.99905 * 179.97438 * 9 7 2 11 11 O 1.21298 * 120.00043 * 359.97438 * 10 9 7 12 12 C 1.50707 * 120.00172 * 179.97438 * 10 9 7 13 13 N 1.46496 * 109.47285 * 180.02562 * 12 10 9 14 14 C 1.34774 * 120.00097 * 180.02562 * 13 12 10 15 15 O 1.21729 * 119.99818 * 359.97438 * 14 13 12 16 16 C 1.46340 * 120.00008 * 180.02562 * 14 13 12 17 17 S 1.75808 * 125.49049 * 4.71518 * 16 14 13 18 18 C 1.70534 * 91.75195 * 180.20769 * 17 16 14 19 19 C 1.33420 * 111.32588 * 359.80722 * 18 17 16 20 20 C 1.37808 * 125.49052 * 184.56658 * 16 14 13 21 21 C 1.48242 * 123.58041 * 0.02562 * 20 16 14 22 22 N 1.34125 * 126.68159 * 311.20408 * 21 20 16 23 23 N 1.28991 * 107.25694 * 179.75644 * 22 21 20 24 24 N 1.28726 * 108.97016 * 0.42921 * 23 22 21 25 25 H 0.96993 * 125.33586 * 179.82629 * 24 23 22 26 26 N 1.28875 * 109.33657 * 359.56054 * 24 23 22 27 27 H 0.97001 * 119.99611 * 0.02562 * 1 2 3 28 28 H 0.96998 * 120.00397 * 359.97438 * 9 7 2 29 29 H 1.09003 * 109.46567 * 59.99943 * 12 10 9 30 30 H 1.09001 * 109.46806 * 299.99989 * 12 10 9 31 31 H 0.97008 * 120.00126 * 359.97438 * 13 12 10 32 32 H 1.07999 * 124.33927 * 179.82825 * 18 17 16 33 33 H 1.08001 * 122.46929 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.1020 1.6963 -1.2125 5 1 1.2833 2.7465 -0.0006 6 1 3.1020 1.6964 1.2125 7 6 2.0089 -1.2034 0.0005 8 1 3.0889 -1.2034 0.0010 9 7 1.3233 -2.3906 0.0005 10 6 1.9972 -3.5578 0.0005 11 8 3.2101 -3.5579 0.0001 12 6 1.2436 -4.8630 0.0011 13 7 2.1955 -5.9765 0.0016 14 6 1.7463 -7.2471 0.0017 15 8 0.5495 -7.4695 0.0018 16 6 2.6972 -8.3595 0.0027 17 16 4.4447 -8.2082 0.1217 18 6 4.6492 -9.8992 0.0383 19 6 3.4757 -10.5252 -0.0672 20 6 2.3670 -9.6944 -0.0864 21 6 0.9739 -10.1888 -0.1981 22 7 -0.0672 -9.8306 0.5677 23 7 -1.0966 -10.4818 0.1432 24 7 -0.7408 -11.2313 -0.8410 25 1 -1.3281 -11.8238 -1.3358 26 7 0.5168 -11.0670 -1.0697 27 1 -0.4849 0.8401 -0.0004 28 1 0.3534 -2.3906 0.0005 29 1 0.6166 -4.9208 -0.8887 30 1 0.6173 -4.9205 0.8914 31 1 3.1493 -5.7993 0.0012 32 1 5.6060 -10.3994 0.0676 33 1 3.3959 -11.6003 -0.1323 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592677540.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:29 Heat of formation + Delta-G solvation = 95.769677 kcal Electronic energy + Delta-G solvation = -23316.020141 eV Core-core repulsion = 19507.210433 eV Total energy + Delta-G solvation = -3808.809708 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 322.063 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -44.37694 -39.75209 -38.40603 -37.63643 -34.49589 -34.19537 -33.69081 -33.00979 -31.40387 -30.34802 -27.89397 -25.87563 -24.54644 -24.34059 -23.00653 -21.33133 -19.89799 -19.57066 -18.82491 -18.58554 -17.99122 -17.07788 -16.24183 -16.05470 -15.37380 -15.21967 -15.15228 -14.37841 -14.35809 -14.02420 -13.91319 -13.63474 -13.33130 -13.10938 -12.72521 -12.22745 -12.16237 -11.92412 -11.63254 -11.32566 -11.21260 -11.10451 -11.08304 -10.71425 -10.50695 -10.31543 -9.87462 -9.62922 -9.14250 -8.80677 -8.77637 -8.64581 -8.10568 -6.51463 -3.93617 0.13620 1.09085 1.14328 1.57594 1.78619 2.24845 2.46057 3.13646 3.18610 3.22199 3.23265 3.28470 3.71404 3.73418 4.11005 4.39456 4.76146 4.85601 4.91523 4.99914 5.16975 5.27917 5.51441 5.59597 5.78178 5.87707 5.93995 5.95585 6.05337 6.35882 6.57913 7.45822 7.68214 7.91155 8.21955 8.32100 8.44859 9.04052 9.38597 9.86270 10.65293 Molecular weight = 322.06amu Principal moments of inertia in cm(-1) A = 0.019745 B = 0.002851 C = 0.002515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1417.721022 B = 9819.321746 C =11128.370810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.026 3.974 3 Si 0.934 3.066 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.272 1.272 7 C -0.306 4.306 8 H 0.106 0.894 9 N -0.547 5.547 10 C 0.427 3.573 11 O -0.597 6.597 12 C 0.111 3.889 13 N -0.702 5.702 14 C 0.577 3.423 15 O -0.510 6.510 16 C -0.223 4.223 17 S 0.264 5.736 18 C -0.241 4.241 19 C -0.119 4.119 20 C 0.037 3.963 21 C 0.235 3.765 22 N -0.215 5.215 23 N -0.057 5.057 24 N -0.236 5.236 25 H 0.472 0.528 26 N -0.292 5.292 27 H 0.275 0.725 28 H 0.396 0.604 29 H 0.086 0.914 30 H 0.088 0.912 31 H 0.408 0.592 32 H 0.176 0.824 33 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.186 -22.462 -1.585 22.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.177 4.177 3 Si 0.761 3.239 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.197 1.197 7 C -0.435 4.435 8 H 0.123 0.877 9 N -0.182 5.182 10 C 0.213 3.787 11 O -0.484 6.484 12 C -0.016 4.016 13 N -0.356 5.356 14 C 0.361 3.639 15 O -0.386 6.386 16 C -0.347 4.347 17 S 0.533 5.467 18 C -0.379 4.379 19 C -0.151 4.151 20 C 0.017 3.983 21 C -0.048 4.048 22 N -0.088 5.088 23 N -0.052 5.052 24 N -0.081 5.081 25 H 0.326 0.674 26 N -0.145 5.145 27 H 0.085 0.915 28 H 0.230 0.770 29 H 0.104 0.896 30 H 0.106 0.894 31 H 0.246 0.754 32 H 0.194 0.806 33 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 4.388 -21.193 -1.268 21.679 hybrid contribution -0.634 -0.706 -0.663 1.158 sum 3.755 -21.899 -1.931 22.302 Atomic orbital electron populations 1.69609 1.06024 1.28664 1.49116 1.25331 0.95661 0.99945 0.96729 0.85869 0.78781 0.80130 0.79168 1.19772 1.20860 1.19734 1.19689 0.93456 0.81973 1.48418 0.87664 1.41777 1.09506 1.04431 1.62454 1.19698 0.88289 0.84944 0.85775 1.90494 1.13649 1.86789 1.57483 1.20988 0.91647 0.85377 1.03601 1.45541 1.11479 1.04340 1.74268 1.16767 0.87473 0.81621 0.78001 1.90917 1.14640 1.84063 1.49003 1.24882 0.98780 0.96781 1.14293 1.83458 0.96793 1.01917 1.64541 1.25147 1.03162 0.99969 1.09618 1.19723 0.89749 1.01456 1.04153 1.16432 0.87808 0.90516 1.03511 1.22741 0.95167 0.94703 0.92190 1.76367 0.94708 1.15784 1.21964 1.78977 1.22136 1.02992 1.01127 1.47680 1.06067 1.30682 1.23648 0.67426 1.74933 0.95033 1.20547 1.23981 0.91508 0.76990 0.89632 0.89351 0.75425 0.80633 0.83311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.86 13.05 55.50 0.72 -23.14 16 2 C 0.03 0.69 5.50 -17.47 -0.10 0.59 16 3 Si 0.93 20.46 29.55 -169.99 -5.02 15.44 16 4 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 5 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 6 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 7 C -0.31 -8.28 9.68 -14.93 -0.14 -8.42 16 8 H 0.11 2.95 7.16 -52.49 -0.38 2.57 16 9 N -0.55 -13.54 5.29 -10.96 -0.06 -13.60 16 10 C 0.43 9.78 7.85 -10.98 -0.09 9.70 16 11 O -0.60 -15.12 15.24 5.54 0.08 -15.04 16 12 C 0.11 2.08 6.15 -5.19 -0.03 2.05 16 13 N -0.70 -12.14 5.52 -62.90 -0.35 -12.49 16 14 C 0.58 9.85 7.76 -13.00 -0.10 9.75 16 15 O -0.51 -10.04 13.85 5.16 0.07 -9.97 16 16 C -0.22 -3.11 6.48 -36.48 -0.24 -3.34 16 17 S 0.26 2.65 22.15 -107.50 -2.38 0.27 16 18 C -0.24 -1.93 10.88 29.05 0.32 -1.62 16 19 C -0.12 -1.15 10.01 -41.15 -0.41 -1.56 16 20 C 0.04 0.48 5.90 -105.82 -0.62 -0.14 16 21 C 0.23 3.40 7.08 -156.25 -1.11 2.29 16 22 N -0.22 -3.51 10.46 32.13 0.34 -3.17 16 23 N -0.06 -0.77 13.47 60.35 0.81 0.04 16 24 N -0.24 -2.35 7.90 60.35 0.48 -1.87 16 25 H 0.47 2.17 8.96 -340.35 -3.05 -0.88 16 26 N -0.29 -3.56 12.40 32.15 0.40 -3.16 16 27 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 28 H 0.40 9.45 7.90 -40.82 -0.32 9.13 16 29 H 0.09 1.53 8.14 -51.93 -0.42 1.11 16 30 H 0.09 1.59 8.14 -51.93 -0.42 1.17 16 31 H 0.41 6.84 6.56 -40.82 -0.27 6.57 16 32 H 0.18 0.84 8.06 -52.49 -0.42 0.41 16 33 H 0.15 1.13 8.06 -52.49 -0.42 0.71 16 LS Contribution 318.77 15.07 4.80 4.80 Total: -1.00 -34.42 318.77 -7.47 -41.89 By element: Atomic # 1 Polarization: 15.54 SS G_CDS: -4.84 Total: 10.70 kcal Atomic # 6 Polarization: 11.81 SS G_CDS: -2.52 Total: 9.29 kcal Atomic # 7 Polarization: -59.72 SS G_CDS: 2.34 Total: -57.38 kcal Atomic # 8 Polarization: -25.16 SS G_CDS: 0.16 Total: -25.01 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.44 kcal Atomic # 16 Polarization: 2.65 SS G_CDS: -2.38 Total: 0.27 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -34.42 -7.47 -41.89 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592677540.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.658 kcal (2) G-P(sol) polarization free energy of solvation -34.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.888 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds