Wall clock time and date at job start Fri Apr 10 2020 18:26:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86797 * 120.00255 * 2 1 4 4 H 1.48500 * 109.47220 * 239.99736 * 3 2 1 5 5 H 1.48502 * 109.47312 * 359.97438 * 3 2 1 6 6 H 1.48506 * 109.47412 * 119.99868 * 3 2 1 7 7 C 1.38954 * 120.00075 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00261 * 180.02562 * 7 2 1 9 9 N 1.37098 * 119.99586 * 0.02562 * 7 2 1 10 10 C 1.34773 * 119.99905 * 179.97438 * 9 7 2 11 11 O 1.21298 * 120.00043 * 359.97438 * 10 9 7 12 12 C 1.50707 * 120.00172 * 179.97438 * 10 9 7 13 13 N 1.46496 * 109.47285 * 180.02562 * 12 10 9 14 14 C 1.34774 * 120.00097 * 180.02562 * 13 12 10 15 15 O 1.21729 * 119.99818 * 359.97438 * 14 13 12 16 16 C 1.46340 * 120.00008 * 180.02562 * 14 13 12 17 17 S 1.75808 * 125.49049 * 4.71518 * 16 14 13 18 18 C 1.70534 * 91.75195 * 180.20769 * 17 16 14 19 19 C 1.33420 * 111.32588 * 359.80722 * 18 17 16 20 20 C 1.37808 * 125.49052 * 184.56658 * 16 14 13 21 21 C 1.48242 * 123.58041 * 0.02562 * 20 16 14 22 22 N 1.34125 * 126.68159 * 311.20408 * 21 20 16 23 23 N 1.28991 * 107.25694 * 179.75644 * 22 21 20 24 24 N 1.28726 * 108.97016 * 0.42921 * 23 22 21 25 25 H 0.96993 * 125.33586 * 179.82629 * 24 23 22 26 26 N 1.28875 * 109.33657 * 359.56054 * 24 23 22 27 27 H 0.97001 * 119.99611 * 0.02562 * 1 2 3 28 28 H 0.96998 * 120.00397 * 359.97438 * 9 7 2 29 29 H 1.09003 * 109.46567 * 59.99943 * 12 10 9 30 30 H 1.09001 * 109.46806 * 299.99989 * 12 10 9 31 31 H 0.97008 * 120.00126 * 359.97438 * 13 12 10 32 32 H 1.07999 * 124.33927 * 179.82825 * 18 17 16 33 33 H 1.08001 * 122.46929 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.1020 1.6963 -1.2125 5 1 1.2833 2.7465 -0.0006 6 1 3.1020 1.6964 1.2125 7 6 2.0089 -1.2034 0.0005 8 1 3.0889 -1.2034 0.0010 9 7 1.3233 -2.3906 0.0005 10 6 1.9972 -3.5578 0.0005 11 8 3.2101 -3.5579 0.0001 12 6 1.2436 -4.8630 0.0011 13 7 2.1955 -5.9765 0.0016 14 6 1.7463 -7.2471 0.0017 15 8 0.5495 -7.4695 0.0018 16 6 2.6972 -8.3595 0.0027 17 16 4.4447 -8.2082 0.1217 18 6 4.6492 -9.8992 0.0383 19 6 3.4757 -10.5252 -0.0672 20 6 2.3670 -9.6944 -0.0864 21 6 0.9739 -10.1888 -0.1981 22 7 -0.0672 -9.8306 0.5677 23 7 -1.0966 -10.4818 0.1432 24 7 -0.7408 -11.2313 -0.8410 25 1 -1.3281 -11.8238 -1.3358 26 7 0.5168 -11.0670 -1.0697 27 1 -0.4849 0.8401 -0.0004 28 1 0.3534 -2.3906 0.0005 29 1 0.6166 -4.9208 -0.8887 30 1 0.6173 -4.9205 0.8914 31 1 3.1493 -5.7993 0.0012 32 1 5.6060 -10.3994 0.0676 33 1 3.3959 -11.6003 -0.1323 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001592677540.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:27 Heat of formation + Delta-G solvation = 67.723041 kcal Electronic energy + Delta-G solvation = -23317.236334 eV Core-core repulsion = 19507.210433 eV Total energy + Delta-G solvation = -3810.025902 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 322.063 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -45.36076 -41.09950 -40.02250 -38.73150 -36.25990 -35.38597 -35.16556 -33.96881 -33.38538 -31.38566 -29.31108 -27.15279 -26.08642 -25.47298 -23.91689 -22.50971 -21.45806 -20.69023 -20.23446 -19.77936 -19.53026 -18.08859 -17.57618 -17.31961 -16.82335 -16.75370 -16.50612 -16.07965 -15.63487 -15.49511 -15.20765 -14.71738 -14.49928 -14.17180 -13.99317 -13.57805 -13.52831 -13.49247 -13.12200 -12.88950 -12.46336 -12.29561 -12.13199 -12.10332 -12.04948 -11.66509 -11.55744 -11.17276 -10.57317 -10.34626 -10.09899 -9.88874 -9.57822 -8.50523 -6.00969 -0.78760 0.14072 0.28933 0.78736 0.92820 1.38559 1.43295 1.43531 1.54183 1.54628 1.88643 1.89523 2.05045 2.31169 2.77752 3.09160 3.16609 3.43486 3.71270 4.09838 4.18338 4.21205 4.36933 4.39426 4.43046 4.53148 4.82685 5.06195 5.13088 5.14583 5.38643 5.67097 5.91319 6.35194 6.47917 7.01098 7.03628 7.21529 7.43281 7.93028 8.66186 Molecular weight = 322.06amu Principal moments of inertia in cm(-1) A = 0.019745 B = 0.002851 C = 0.002515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1417.721022 B = 9819.321746 C =11128.370810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.011 4.011 3 Si 0.998 3.002 4 H -0.269 1.269 5 H -0.273 1.273 6 H -0.269 1.269 7 C -0.338 4.338 8 H 0.089 0.911 9 N -0.558 5.558 10 C 0.433 3.567 11 O -0.621 6.621 12 C 0.124 3.876 13 N -0.704 5.704 14 C 0.578 3.422 15 O -0.544 6.544 16 C -0.271 4.271 17 S 0.290 5.710 18 C -0.207 4.207 19 C -0.131 4.131 20 C 0.035 3.965 21 C 0.218 3.782 22 N -0.258 5.258 23 N -0.070 5.070 24 N -0.205 5.205 25 H 0.493 0.507 26 N -0.285 5.285 27 H 0.280 0.720 28 H 0.398 0.602 29 H 0.094 0.906 30 H 0.096 0.904 31 H 0.410 0.590 32 H 0.219 0.781 33 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.740 -23.829 -1.971 24.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.211 4.211 3 Si 0.821 3.179 4 H -0.194 1.194 5 H -0.197 1.197 6 H -0.194 1.194 7 C -0.467 4.467 8 H 0.107 0.893 9 N -0.193 5.193 10 C 0.220 3.780 11 O -0.509 6.509 12 C -0.004 4.004 13 N -0.359 5.359 14 C 0.365 3.635 15 O -0.423 6.423 16 C -0.394 4.394 17 S 0.559 5.441 18 C -0.344 4.344 19 C -0.160 4.160 20 C 0.014 3.986 21 C -0.064 4.064 22 N -0.130 5.130 23 N -0.065 5.065 24 N -0.055 5.055 25 H 0.351 0.649 26 N -0.139 5.139 27 H 0.089 0.911 28 H 0.233 0.767 29 H 0.112 0.888 30 H 0.114 0.886 31 H 0.249 0.751 32 H 0.236 0.764 33 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 5.927 -22.586 -1.656 23.409 hybrid contribution -1.082 -0.453 -0.589 1.312 sum 4.845 -23.039 -2.246 23.650 Atomic orbital electron populations 1.69683 1.07085 1.29723 1.49187 1.26152 0.96519 1.02747 0.95710 0.84918 0.77711 0.76127 0.79187 1.19383 1.19734 1.19366 1.19735 0.93063 0.83437 1.50460 0.89321 1.41828 1.09586 1.04588 1.63281 1.20307 0.88132 0.85764 0.83794 1.90467 1.14945 1.87457 1.58028 1.20788 0.91490 0.83698 1.04388 1.45522 1.11216 1.04267 1.74847 1.17173 0.87732 0.81885 0.76726 1.90888 1.16278 1.84543 1.50561 1.24619 1.00537 0.95935 1.18350 1.83396 0.93602 1.03566 1.63529 1.25652 1.04372 0.98685 1.05717 1.19900 0.88980 1.02334 1.04824 1.16820 0.88210 0.90794 1.02758 1.23105 0.95741 0.95153 0.92433 1.76332 0.95715 1.17273 1.23707 1.78890 1.21838 1.03640 1.02132 1.47743 1.05839 1.29485 1.22442 0.64855 1.74896 0.95588 1.20062 1.23358 0.91065 0.76742 0.88757 0.88590 0.75145 0.76431 0.81035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.02 13.05 21.66 0.28 -48.74 16 2 C -0.01 -0.55 5.50 84.93 0.47 -0.09 16 3 Si 1.00 41.68 29.55 68.60 2.03 43.70 16 4 H -0.27 -11.01 7.11 99.48 0.71 -10.31 16 5 H -0.27 -10.84 7.11 99.48 0.71 -10.13 16 6 H -0.27 -11.01 7.11 99.48 0.71 -10.31 16 7 C -0.34 -18.60 9.68 84.04 0.81 -17.79 16 8 H 0.09 5.09 7.16 -2.91 -0.02 5.07 16 9 N -0.56 -28.22 5.29 -306.97 -1.62 -29.84 16 10 C 0.43 20.20 7.85 87.66 0.69 20.89 16 11 O -0.62 -31.94 15.24 -3.08 -0.05 -31.99 16 12 C 0.12 4.72 6.15 85.64 0.53 5.24 16 13 N -0.70 -24.69 5.52 -471.14 -2.60 -27.29 16 14 C 0.58 20.07 7.76 86.35 0.67 20.74 16 15 O -0.54 -22.06 13.85 -4.44 -0.06 -22.12 16 16 C -0.27 -7.42 6.48 24.28 0.16 -7.27 16 17 S 0.29 5.25 22.15 -56.49 -1.25 4.00 16 18 C -0.21 -2.51 10.88 66.73 0.73 -1.78 16 19 C -0.13 -2.15 10.01 21.26 0.21 -1.93 16 20 C 0.03 0.88 5.90 -20.64 -0.12 0.76 16 21 C 0.22 6.24 7.08 137.26 0.97 7.22 16 22 N -0.26 -8.54 10.46 -52.26 -0.55 -9.09 16 23 N -0.07 -1.89 13.47 37.02 0.50 -1.39 16 24 N -0.20 -3.87 7.90 37.02 0.29 -3.58 16 25 H 0.49 3.78 8.96 -347.53 -3.11 0.66 16 26 N -0.29 -6.64 12.40 -52.21 -0.65 -7.28 16 27 H 0.28 14.03 8.31 -92.71 -0.77 13.26 16 28 H 0.40 19.49 7.90 -92.71 -0.73 18.76 16 29 H 0.09 3.44 8.14 -2.39 -0.02 3.42 16 30 H 0.10 3.52 8.14 -2.39 -0.02 3.50 16 31 H 0.41 13.89 6.56 -92.70 -0.61 13.28 16 32 H 0.22 0.80 8.06 -2.91 -0.02 0.78 16 33 H 0.17 2.00 8.06 -2.91 -0.02 1.98 16 Total: -1.00 -75.88 318.77 -1.78 -77.66 By element: Atomic # 1 Polarization: 33.17 SS G_CDS: -3.21 Total: 29.96 kcal Atomic # 6 Polarization: 20.89 SS G_CDS: 5.11 Total: 26.00 kcal Atomic # 7 Polarization: -122.86 SS G_CDS: -4.34 Total: -127.21 kcal Atomic # 8 Polarization: -54.00 SS G_CDS: -0.11 Total: -54.11 kcal Atomic # 14 Polarization: 41.68 SS G_CDS: 2.03 Total: 43.70 kcal Atomic # 16 Polarization: 5.25 SS G_CDS: -1.25 Total: 4.00 kcal Total: -75.88 -1.78 -77.66 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592677540.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.381 kcal (2) G-P(sol) polarization free energy of solvation -75.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.658 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds