Wall clock time and date at job start Fri Apr 10 2020 18:26:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86800 * 119.99944 * 2 1 4 4 H 1.48501 * 109.47057 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47102 * 299.99621 * 3 2 1 6 6 H 1.48500 * 109.47389 * 59.99969 * 3 2 1 7 7 C 1.38951 * 120.00253 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00337 * 179.97438 * 7 2 1 9 9 N 1.37095 * 119.99667 * 0.02562 * 7 2 1 10 10 C 1.34777 * 119.99962 * 180.02562 * 9 7 2 11 11 O 1.21292 * 119.99984 * 359.97438 * 10 9 7 12 12 C 1.50706 * 119.99762 * 179.97438 * 10 9 7 13 13 N 1.46500 * 109.46949 * 179.97438 * 12 10 9 14 14 C 1.34769 * 120.00237 * 180.02562 * 13 12 10 15 15 O 1.21701 * 119.99994 * 359.97438 * 14 13 12 16 16 C 1.46640 * 120.00309 * 180.02562 * 14 13 12 17 17 C 1.36260 * 125.21469 * 179.71970 * 16 14 13 18 18 C 1.38445 * 113.38568 * 179.83300 * 17 16 14 19 19 C 1.48486 * 122.78845 * 180.22184 * 18 17 16 20 20 N 1.34047 * 126.67090 * 359.95862 * 19 18 17 21 21 N 1.28985 * 107.27197 * 179.83593 * 20 19 18 22 22 N 1.28736 * 108.93581 * 0.43041 * 21 20 19 23 23 H 0.97008 * 125.33981 * 179.74462 * 22 21 20 24 24 N 1.28867 * 109.32049 * 359.72717 * 22 21 20 25 25 C 1.35915 * 114.43224 * 0.45071 * 18 17 16 26 26 S 1.70583 * 110.78861 * 359.74665 * 25 18 17 27 27 H 0.96996 * 119.99717 * 0.02562 * 1 2 3 28 28 H 0.96999 * 119.99990 * 359.97438 * 9 7 2 29 29 H 1.09000 * 109.47318 * 299.99141 * 12 10 9 30 30 H 1.09000 * 109.47161 * 59.99772 * 12 10 9 31 31 H 0.97010 * 119.99909 * 359.97438 * 13 12 10 32 32 H 1.08004 * 123.30563 * 359.97438 * 17 16 14 33 33 H 1.07996 * 124.60833 * 179.71851 * 25 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7081 1.3464 -0.0006 5 1 1.8894 2.3964 -1.2126 6 1 1.8894 2.3965 1.2125 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0001 9 7 1.3234 -2.3906 0.0005 10 6 1.9973 -3.5578 0.0016 11 8 3.2102 -3.5578 0.0021 12 6 1.2437 -4.8629 0.0022 13 7 2.1957 -5.9764 0.0027 14 6 1.7465 -7.2471 0.0027 15 8 0.5500 -7.4695 0.0028 16 6 2.6994 -8.3617 0.0038 17 6 2.3638 -9.6823 0.0094 18 6 3.4600 -10.5279 0.0054 19 6 3.3343 -12.0074 0.0054 20 7 2.1952 -12.7140 0.0098 21 7 2.5191 -13.9626 0.0045 22 7 3.8026 -14.0612 0.0061 23 1 4.3015 -14.8932 0.0066 24 7 4.3209 -12.8814 0.0067 25 6 4.6609 -9.8914 0.0064 26 16 4.4491 -8.1988 0.0054 27 1 -0.4849 0.8400 -0.0004 28 1 0.3534 -2.3906 0.0005 29 1 0.6168 -4.9201 0.8920 30 1 0.6174 -4.9212 -0.8880 31 1 3.1495 -5.7992 0.0022 32 1 1.3429 -10.0347 0.0140 33 1 5.6191 -10.3896 0.0081 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001606349617.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:52 Heat of formation + Delta-G solvation = 58.278757 kcal Electronic energy + Delta-G solvation = -22474.441557 eV Core-core repulsion = 18664.006120 eV Total energy + Delta-G solvation = -3810.435436 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 322.063 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -45.46819 -41.10648 -40.00402 -38.85696 -36.25935 -35.36660 -35.27929 -34.09615 -33.36652 -31.28156 -29.23707 -27.10905 -26.46080 -25.37147 -24.37502 -22.04053 -21.46174 -20.83229 -20.06520 -20.00145 -19.40352 -18.15334 -17.58041 -17.42072 -16.82449 -16.81192 -16.73159 -16.10200 -15.60815 -15.60607 -15.11986 -14.82300 -14.34253 -14.06376 -13.98646 -13.94861 -13.56909 -13.53429 -13.21186 -12.90367 -12.42455 -12.41244 -12.20127 -12.10473 -12.08858 -11.92310 -11.56501 -11.35841 -10.55689 -10.37778 -10.08449 -9.96841 -9.50782 -8.49578 -5.99505 -0.70999 0.01121 0.29944 0.44673 0.66935 1.36618 1.43217 1.45033 1.58670 1.64547 1.88367 1.90897 2.10818 2.31719 2.72888 3.10296 3.17688 3.17843 3.68808 3.95937 4.16846 4.22095 4.29655 4.41242 4.42635 4.43789 4.73893 4.96459 5.04467 5.12649 5.40634 5.61952 5.93124 6.33713 6.49419 6.97290 7.05162 7.11231 7.45307 7.95052 8.67435 Molecular weight = 322.06amu Principal moments of inertia in cm(-1) A = 0.043924 B = 0.002096 C = 0.002003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 637.310098 B =13354.253775 C =13976.417371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.012 4.012 3 Si 0.997 3.003 4 H -0.268 1.268 5 H -0.272 1.272 6 H -0.272 1.272 7 C -0.335 4.335 8 H 0.088 0.912 9 N -0.558 5.558 10 C 0.433 3.567 11 O -0.622 6.622 12 C 0.120 3.880 13 N -0.704 5.704 14 C 0.591 3.409 15 O -0.565 6.565 16 C -0.298 4.298 17 C -0.020 4.020 18 C -0.065 4.065 19 C 0.231 3.769 20 N -0.298 5.298 21 N -0.057 5.057 22 N -0.198 5.198 23 H 0.495 0.505 24 N -0.289 5.289 25 C -0.176 4.176 26 S 0.317 5.683 27 H 0.279 0.721 28 H 0.399 0.601 29 H 0.100 0.900 30 H 0.100 0.900 31 H 0.411 0.589 32 H 0.152 0.848 33 H 0.210 0.790 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.683 -24.595 0.018 26.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.212 4.212 3 Si 0.820 3.180 4 H -0.193 1.193 5 H -0.198 1.198 6 H -0.198 1.198 7 C -0.464 4.464 8 H 0.106 0.894 9 N -0.194 5.194 10 C 0.220 3.780 11 O -0.510 6.510 12 C -0.007 4.007 13 N -0.357 5.357 14 C 0.379 3.621 15 O -0.446 6.446 16 C -0.418 4.418 17 C -0.054 4.054 18 C -0.082 4.082 19 C -0.051 4.051 20 N -0.170 5.170 21 N -0.051 5.051 22 N -0.050 5.050 23 H 0.355 0.645 24 N -0.142 5.142 25 C -0.318 4.318 26 S 0.586 5.414 27 H 0.089 0.911 28 H 0.233 0.767 29 H 0.118 0.882 30 H 0.118 0.882 31 H 0.250 0.750 32 H 0.170 0.830 33 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges 11.150 -23.868 0.022 26.344 hybrid contribution -0.565 -0.470 -0.002 0.735 sum 10.585 -24.338 0.020 26.541 Atomic orbital electron populations 1.69686 1.07014 1.29549 1.49355 1.26137 0.96536 1.02720 0.95857 0.84806 0.78213 0.76735 0.78202 1.19277 1.19774 1.19763 1.19785 0.93026 0.83432 1.50162 0.89367 1.41842 1.09642 1.04588 1.63308 1.20344 0.88132 0.85821 0.83706 1.90471 1.15020 1.87474 1.58021 1.20869 0.91500 0.83504 1.04870 1.45532 1.11369 1.04364 1.74457 1.17129 0.87343 0.81763 0.75897 1.90814 1.16778 1.84926 1.52119 1.24175 0.99522 0.96709 1.21373 1.20473 1.00698 0.89826 0.94366 1.16109 0.92937 0.86194 1.12971 1.23117 0.84787 0.95276 1.01874 1.76144 1.25506 0.96370 1.19029 1.78889 0.97253 1.13911 1.15096 1.47786 1.04340 1.09057 1.43772 0.64526 1.74853 1.25825 0.91271 1.22247 1.26165 1.02997 1.00091 1.02521 1.83346 0.95525 0.99535 1.63039 0.91111 0.76654 0.88185 0.88198 0.75039 0.83005 0.77309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.16 13.05 21.66 0.28 -47.88 16 2 C -0.01 -0.61 5.50 84.93 0.47 -0.14 16 3 Si 1.00 41.19 29.55 68.60 2.03 43.22 16 4 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 5 H -0.27 -10.86 7.11 99.48 0.71 -10.15 16 6 H -0.27 -10.85 7.11 99.48 0.71 -10.15 16 7 C -0.33 -18.10 9.68 84.04 0.81 -17.29 16 8 H 0.09 5.01 7.16 -2.91 -0.02 4.99 16 9 N -0.56 -27.48 5.29 -306.98 -1.62 -29.10 16 10 C 0.43 19.48 7.85 87.66 0.69 20.17 16 11 O -0.62 -31.11 15.24 -3.07 -0.05 -31.16 16 12 C 0.12 4.29 6.15 85.63 0.53 4.82 16 13 N -0.70 -23.05 5.52 -470.85 -2.60 -25.65 16 14 C 0.59 18.97 7.78 86.44 0.67 19.65 16 15 O -0.57 -21.57 16.82 -4.35 -0.07 -21.64 16 16 C -0.30 -7.51 6.42 24.00 0.15 -7.35 16 17 C -0.02 -0.48 9.75 21.86 0.21 -0.26 16 18 C -0.07 -1.31 5.81 -21.04 -0.12 -1.43 16 19 C 0.23 4.71 8.03 137.39 1.10 5.81 16 20 N -0.30 -6.89 12.45 -52.17 -0.65 -7.53 16 21 N -0.06 -1.00 13.47 37.02 0.50 -0.51 16 22 N -0.20 -2.11 7.90 37.02 0.29 -1.82 16 23 H 0.50 0.04 8.96 -347.53 -3.12 -3.08 16 24 N -0.29 -4.39 12.30 -52.11 -0.64 -5.04 16 25 C -0.18 -2.59 10.72 67.28 0.72 -1.87 16 26 S 0.32 5.48 22.11 -56.49 -1.25 4.23 16 27 H 0.28 13.73 8.31 -92.71 -0.77 12.96 16 28 H 0.40 18.90 7.90 -92.71 -0.73 18.16 16 29 H 0.10 3.38 8.14 -2.39 -0.02 3.36 16 30 H 0.10 3.37 8.14 -2.39 -0.02 3.35 16 31 H 0.41 13.01 6.53 -92.70 -0.61 12.40 16 32 H 0.15 4.00 8.05 -2.91 -0.02 3.98 16 33 H 0.21 1.81 8.06 -2.91 -0.02 1.78 16 Total: -1.00 -71.76 323.97 -1.75 -73.51 By element: Atomic # 1 Polarization: 30.48 SS G_CDS: -3.21 Total: 27.27 kcal Atomic # 6 Polarization: 16.86 SS G_CDS: 5.24 Total: 22.09 kcal Atomic # 7 Polarization: -113.08 SS G_CDS: -4.44 Total: -117.52 kcal Atomic # 8 Polarization: -52.68 SS G_CDS: -0.12 Total: -52.80 kcal Atomic # 14 Polarization: 41.19 SS G_CDS: 2.03 Total: 43.22 kcal Atomic # 16 Polarization: 5.48 SS G_CDS: -1.25 Total: 4.23 kcal Total: -71.76 -1.75 -73.51 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001606349617.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.789 kcal (2) G-P(sol) polarization free energy of solvation -71.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.510 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds