Wall clock time and date at job start Fri Apr 10 2020 18:27:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46905 * 111.00196 * 2 1 4 4 C 1.46899 * 110.99800 * 123.95363 * 2 1 3 5 5 C 1.53006 * 109.47356 * 165.05334 * 4 2 1 6 6 C 1.50705 * 115.55703 * 320.46658 * 5 4 2 7 7 O 1.21277 * 119.99502 * 96.17643 * 6 5 4 8 8 N 1.34774 * 119.99866 * 276.16749 * 6 5 4 9 9 C 1.47563 * 125.67159 * 4.60490 * 8 6 5 10 10 C 1.55439 * 104.87723 * 156.03027 * 9 8 6 11 11 C 1.53656 * 101.31422 * 35.82220 * 10 9 8 12 12 C 1.53654 * 111.41841 * 204.77376 * 11 10 9 13 13 C 1.55180 * 101.42238 * 272.73449 * 12 11 10 14 14 N 1.47565 * 105.00254 * 324.51005 * 13 12 11 15 15 C 1.36943 * 125.67103 * 203.82489 * 14 13 12 16 16 H 1.07998 * 119.99974 * 180.02562 * 15 14 13 17 17 C 1.38807 * 120.00206 * 0.04409 * 15 14 13 18 18 N 1.31625 * 119.99812 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00051 * 180.02562 * 17 15 14 20 20 H 1.48493 * 109.47166 * 359.97438 * 19 17 15 21 21 H 1.48498 * 109.47297 * 119.99968 * 19 17 15 22 22 H 1.48498 * 109.46825 * 239.99582 * 19 17 15 23 23 C 1.47406 * 108.65300 * 23.85984 * 14 13 12 24 24 C 1.47409 * 125.67338 * 184.90162 * 8 6 5 25 25 C 1.52995 * 117.49909 * 106.15319 * 5 4 2 26 26 C 1.52990 * 59.99996 * 107.49179 * 25 5 4 27 27 H 1.08998 * 109.47467 * 296.04845 * 1 2 3 28 28 H 1.09008 * 109.46865 * 56.04959 * 1 2 3 29 29 H 1.09004 * 109.47118 * 176.04314 * 1 2 3 30 30 H 1.08995 * 109.47086 * 187.80685 * 3 2 1 31 31 H 1.08993 * 109.46949 * 307.81408 * 3 2 1 32 32 H 1.09000 * 109.46604 * 67.80964 * 3 2 1 33 33 H 1.08998 * 109.47622 * 45.04947 * 4 2 1 34 34 H 1.08997 * 109.47185 * 285.05158 * 4 2 1 35 35 H 1.09001 * 110.33475 * 275.01032 * 9 8 6 36 36 H 1.08998 * 110.33664 * 37.25117 * 9 8 6 37 37 H 1.09006 * 111.25129 * 277.74573 * 10 9 8 38 38 H 1.09002 * 110.95237 * 153.76751 * 10 9 8 39 39 H 1.09001 * 111.03699 * 30.77040 * 12 11 10 40 40 H 1.09002 * 111.03463 * 154.69902 * 12 11 10 41 41 H 1.08994 * 110.33754 * 205.62980 * 13 12 11 42 42 H 1.08997 * 110.42383 * 83.42927 * 13 12 11 43 43 H 0.96999 * 119.99352 * 180.02562 * 18 17 15 44 44 H 1.08998 * 109.98076 * 238.53823 * 23 14 13 45 45 H 1.09002 * 109.98051 * 117.23495 * 23 14 13 46 46 H 1.08994 * 109.98566 * 301.46254 * 24 8 6 47 47 H 1.08996 * 109.98016 * 62.73222 * 24 8 6 48 48 H 1.09004 * 117.50101 * 214.98198 * 25 5 4 49 49 H 1.09004 * 117.49960 * 0.02562 * 25 5 4 50 50 H 1.08999 * 117.50142 * 252.51157 * 26 25 5 51 51 H 1.09008 * 117.50189 * 107.49164 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.9954 -0.7660 1.1376 5 6 3.4793 -1.0616 0.9105 6 6 3.8626 -1.4172 -0.5029 7 8 4.2937 -0.5625 -1.2475 8 7 3.7263 -2.6850 -0.9394 9 6 3.1291 -3.7982 -0.1767 10 6 2.6467 -4.8077 -1.2557 11 6 3.7480 -4.6634 -2.3174 12 6 3.2387 -5.0602 -3.7117 13 6 3.5018 -6.5895 -3.7113 14 7 4.7538 -6.7615 -2.9495 15 6 5.6152 -7.8206 -3.0576 16 1 6.5092 -7.8534 -2.4525 17 6 5.3396 -8.8517 -3.9451 18 7 4.2500 -8.8117 -4.6824 19 14 6.5144 -10.2966 -4.0920 20 1 7.6553 -10.1036 -3.1613 21 1 5.8004 -11.5521 -3.7469 22 1 7.0215 -10.3825 -5.4850 23 6 4.9225 -5.6043 -2.0522 24 6 4.1545 -3.1917 -2.2558 25 6 4.4924 -0.2692 1.7391 26 6 4.2444 -1.7478 2.0439 27 1 -0.3634 0.4513 0.9232 28 1 -0.3633 0.5740 -0.8525 29 1 -0.3633 -1.0252 -0.0709 30 1 3.0762 1.3457 -0.1396 31 1 1.5375 1.9364 -0.8118 32 1 1.7633 1.8497 0.9516 33 1 1.4478 -1.7040 1.2286 34 1 1.8764 -0.1857 2.0525 35 1 3.8766 -4.2586 0.4693 36 1 2.2844 -3.4428 0.4135 37 1 1.6750 -4.5214 -1.6583 38 1 2.6187 -5.8215 -0.8562 39 1 2.1749 -4.8462 -3.8152 40 1 3.8137 -4.5645 -4.4939 41 1 3.6262 -6.9527 -4.7314 42 1 2.6839 -7.1160 -3.2195 43 1 4.0573 -9.5325 -5.3023 44 1 5.8625 -5.0975 -2.2706 45 1 4.9090 -5.9335 -1.0132 46 1 3.6571 -2.6342 -3.0494 47 1 5.2358 -3.0987 -2.3568 48 1 5.4361 -0.0050 1.2620 49 1 4.1017 0.4625 2.4463 50 1 3.6907 -1.9887 2.9513 51 1 5.0251 -2.4565 1.7672 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754564613.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:33 Heat of formation + Delta-G solvation = 34.816593 kcal Electronic energy + Delta-G solvation = -28837.727268 eV Core-core repulsion = 25159.987102 eV Total energy + Delta-G solvation = -3677.740165 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 321.216 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.52999 -39.05180 -37.36900 -35.96272 -35.54143 -32.62622 -30.30098 -29.31107 -28.53168 -28.03171 -27.72318 -25.76547 -24.33853 -22.88356 -22.64721 -22.43688 -21.57193 -20.29696 -18.91367 -18.32023 -16.96182 -16.54277 -16.02455 -15.92475 -15.41757 -15.17195 -14.82516 -14.75191 -14.29766 -14.16362 -13.81738 -13.72134 -13.02433 -12.79034 -12.74476 -12.51359 -12.38422 -12.26536 -12.14247 -12.04737 -11.85052 -11.76576 -11.73001 -11.45767 -11.30249 -11.12790 -10.87574 -10.77305 -10.70453 -10.28672 -10.16717 -9.96977 -9.90701 -9.74220 -9.58824 -9.41430 -8.63437 -8.56444 -8.38630 -6.81274 -5.64017 -3.05208 2.83437 3.04566 3.40406 3.41911 3.46117 3.48472 3.73353 4.41513 4.49009 4.50701 4.56803 4.77726 4.82904 4.95875 4.98567 5.07844 5.10725 5.19055 5.24890 5.35660 5.40442 5.44100 5.47752 5.48073 5.51668 5.52868 5.64239 5.65917 5.70452 5.85287 5.86411 5.89292 5.93105 6.07342 6.13070 6.24241 6.32865 6.39824 6.42206 6.58839 6.70757 6.76810 6.79711 6.82363 6.88772 7.53606 7.64488 7.76520 7.87742 8.37527 8.41336 9.23547 9.84217 10.49663 11.39967 Molecular weight = 321.22amu Principal moments of inertia in cm(-1) A = 0.025034 B = 0.002937 C = 0.002811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1118.211759 B = 9531.750995 C = 9957.253023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.542 5.542 3 C 0.027 3.973 4 C 0.101 3.899 5 C -0.145 4.145 6 C 0.584 3.416 7 O -0.538 6.538 8 N -0.610 5.610 9 C 0.106 3.894 10 C -0.113 4.113 11 C -0.081 4.081 12 C -0.130 4.130 13 C 0.155 3.845 14 N -0.604 5.604 15 C -0.220 4.220 16 H 0.077 0.923 17 C -0.012 4.012 18 N -0.922 5.922 19 Si 0.913 3.087 20 H -0.280 1.280 21 H -0.291 1.291 22 H -0.291 1.291 23 C 0.152 3.848 24 C 0.128 3.872 25 C -0.149 4.149 26 C -0.160 4.160 27 H 0.023 0.977 28 H 0.069 0.931 29 H 0.068 0.932 30 H 0.081 0.919 31 H 0.064 0.936 32 H 0.020 0.980 33 H 0.081 0.919 34 H 0.044 0.956 35 H 0.067 0.933 36 H 0.069 0.931 37 H 0.073 0.927 38 H 0.087 0.913 39 H 0.061 0.939 40 H 0.062 0.938 41 H 0.104 0.896 42 H 0.013 0.987 43 H 0.251 0.749 44 H 0.024 0.976 45 H 0.023 0.977 46 H 0.068 0.932 47 H 0.066 0.934 48 H 0.100 0.900 49 H 0.099 0.901 50 H 0.103 0.897 51 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.260 16.840 13.883 23.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.265 5.265 3 C -0.121 4.121 4 C -0.027 4.027 5 C -0.149 4.149 6 C 0.371 3.629 7 O -0.414 6.414 8 N -0.344 5.344 9 C -0.017 4.017 10 C -0.151 4.151 11 C -0.082 4.082 12 C -0.169 4.169 13 C 0.030 3.970 14 N -0.330 5.330 15 C -0.349 4.349 16 H 0.095 0.905 17 C -0.207 4.207 18 N -0.571 5.571 19 Si 0.744 3.256 20 H -0.206 1.206 21 H -0.218 1.218 22 H -0.218 1.218 23 C 0.026 3.974 24 C 0.005 3.995 25 C -0.186 4.186 26 C -0.198 4.198 27 H 0.041 0.959 28 H 0.088 0.912 29 H 0.087 0.913 30 H 0.099 0.901 31 H 0.083 0.917 32 H 0.038 0.962 33 H 0.099 0.901 34 H 0.062 0.938 35 H 0.085 0.915 36 H 0.088 0.912 37 H 0.092 0.908 38 H 0.105 0.895 39 H 0.080 0.920 40 H 0.081 0.919 41 H 0.122 0.878 42 H 0.031 0.969 43 H 0.062 0.938 44 H 0.042 0.958 45 H 0.040 0.960 46 H 0.086 0.914 47 H 0.084 0.916 48 H 0.119 0.881 49 H 0.118 0.882 50 H 0.121 0.879 51 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -6.835 16.955 12.956 22.406 hybrid contribution 0.211 -0.438 0.742 0.887 sum -6.624 16.517 13.697 22.457 Atomic orbital electron populations 1.22382 0.87117 1.02343 1.00361 1.61824 1.07627 1.14642 1.42425 1.22427 1.02367 0.87880 0.99436 1.21561 0.91180 0.98358 0.91634 1.21383 0.94628 1.07516 0.91362 1.18664 0.76915 0.80388 0.86900 1.90648 1.46590 1.47441 1.56764 1.48515 1.60451 1.08280 1.17148 1.22436 0.97250 0.87211 0.94810 1.22665 0.98019 0.99320 0.95080 1.21526 0.96538 0.92888 0.97234 1.22862 0.99271 1.00911 0.93894 1.21952 0.86848 0.87965 1.00192 1.44640 1.23818 1.20313 1.44273 1.19119 1.01155 0.96293 1.18299 0.90521 1.24776 0.97903 0.98815 0.99222 1.69820 1.25766 1.33042 1.28442 0.86015 0.79869 0.82299 0.77426 1.20571 1.21809 1.21778 1.21121 0.93890 0.88416 0.93935 1.21845 0.99671 0.93440 0.84503 1.23058 1.00009 0.94471 1.01098 1.23110 1.02452 0.96017 0.98232 0.95866 0.91243 0.91317 0.90051 0.91749 0.96178 0.90084 0.93780 0.91513 0.91231 0.90813 0.89461 0.92047 0.91920 0.87790 0.96941 0.93832 0.95789 0.95955 0.91371 0.91578 0.88107 0.88225 0.87910 0.87968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 9.54 60.06 0.57 0.80 16 2 N -0.54 -5.88 4.30 -251.26 -1.08 -6.96 16 3 C 0.03 0.28 9.40 60.07 0.56 0.84 16 4 C 0.10 0.95 4.94 -3.82 -0.02 0.93 16 5 C -0.15 -1.56 0.59 -155.66 -0.09 -1.65 16 6 C 0.58 8.62 6.30 -10.98 -0.07 8.55 16 7 O -0.54 -9.83 16.55 5.56 0.09 -9.74 16 8 N -0.61 -8.84 3.34 -170.69 -0.57 -9.41 16 9 C 0.11 1.30 6.13 -2.16 -0.01 1.29 16 10 C -0.11 -1.61 5.87 -25.09 -0.15 -1.76 16 11 C -0.08 -1.37 0.61 -154.03 -0.09 -1.47 16 12 C -0.13 -2.44 5.93 -25.24 -0.15 -2.59 16 13 C 0.16 3.69 5.83 -2.30 -0.01 3.67 16 14 N -0.60 -15.23 3.41 -170.42 -0.58 -15.82 16 15 C -0.22 -6.10 10.28 -15.06 -0.15 -6.25 16 16 H 0.08 2.07 7.83 -52.49 -0.41 1.65 16 17 C -0.01 -0.33 5.49 -17.43 -0.10 -0.43 16 18 N -0.92 -26.68 10.10 55.49 0.56 -26.12 16 19 Si 0.91 22.01 29.55 -169.99 -5.02 16.99 16 20 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 21 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 22 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 23 C 0.15 3.12 6.39 -3.65 -0.02 3.09 16 24 C 0.13 2.07 6.14 -3.64 -0.02 2.05 16 25 C -0.15 -1.38 9.68 -26.74 -0.26 -1.64 16 26 C -0.16 -1.39 9.36 -26.74 -0.25 -1.64 16 27 H 0.02 0.17 8.14 -51.93 -0.42 -0.25 16 28 H 0.07 0.58 8.08 -51.92 -0.42 0.16 16 29 H 0.07 0.57 8.09 -51.93 -0.42 0.15 16 30 H 0.08 1.00 6.57 -51.93 -0.34 0.66 16 31 H 0.06 0.63 8.05 -51.93 -0.42 0.22 16 32 H 0.02 0.17 8.05 -51.93 -0.42 -0.24 16 33 H 0.08 0.70 6.89 -51.93 -0.36 0.35 16 34 H 0.04 0.36 7.80 -51.93 -0.40 -0.05 16 35 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.07 0.72 6.61 -51.93 -0.34 0.38 16 37 H 0.07 1.00 7.82 -51.93 -0.41 0.59 16 38 H 0.09 1.32 7.94 -51.93 -0.41 0.91 16 39 H 0.06 1.03 7.78 -51.93 -0.40 0.62 16 40 H 0.06 1.18 8.09 -51.93 -0.42 0.76 16 41 H 0.10 2.82 5.89 -51.93 -0.31 2.51 16 42 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 43 H 0.25 7.04 8.31 -40.82 -0.34 6.71 16 44 H 0.02 0.51 7.44 -51.93 -0.39 0.12 16 45 H 0.02 0.45 7.78 -51.93 -0.40 0.05 16 46 H 0.07 1.14 7.86 -51.93 -0.41 0.74 16 47 H 0.07 1.13 7.42 -51.93 -0.39 0.75 16 48 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 49 H 0.10 0.74 8.08 -51.93 -0.42 0.32 16 50 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 51 H 0.10 0.96 8.14 -51.92 -0.42 0.54 16 LS Contribution 392.25 15.07 5.91 5.91 Total: -1.00 -31.94 392.25 -10.11 -42.05 By element: Atomic # 1 Polarization: 8.45 SS G_CDS: -9.16 Total: -0.70 kcal Atomic # 6 Polarization: 4.07 SS G_CDS: -0.26 Total: 3.81 kcal Atomic # 7 Polarization: -56.65 SS G_CDS: -1.67 Total: -58.32 kcal Atomic # 8 Polarization: -9.83 SS G_CDS: 0.09 Total: -9.74 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -31.94 -10.11 -42.05 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754564613.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.871 kcal (2) G-P(sol) polarization free energy of solvation -31.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.054 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds