Wall clock time and date at job start Fri Apr 10 2020 18:25:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34228 * 117.00262 * 2 1 4 4 O 1.20822 * 120.00350 * 359.97438 * 3 2 1 5 5 C 1.50698 * 119.99775 * 180.02562 * 3 2 1 6 6 N 1.46499 * 109.47033 * 179.97438 * 5 3 2 7 7 C 1.36601 * 119.99872 * 262.92150 * 6 5 3 8 8 H 1.08002 * 120.00363 * 0.29682 * 7 6 5 9 9 C 1.39248 * 120.00141 * 180.29190 * 7 6 5 10 10 N 1.31243 * 119.99629 * 85.60899 * 9 7 6 11 11 Si 1.86792 * 120.00135 * 265.61157 * 9 7 6 12 12 H 1.48500 * 109.47295 * 64.98236 * 11 9 7 13 13 H 1.48502 * 109.46969 * 184.97907 * 11 9 7 14 14 H 1.48500 * 109.47138 * 304.97910 * 11 9 7 15 15 C 1.34771 * 120.00214 * 82.92292 * 6 5 3 16 16 O 1.21570 * 119.99955 * 185.15760 * 15 6 5 17 17 C 1.48087 * 119.99992 * 5.15731 * 15 6 5 18 18 C 1.39466 * 119.57818 * 173.21447 * 17 15 6 19 19 C 1.38324 * 119.19577 * 179.97438 * 18 17 15 20 20 C 1.40015 * 118.36599 * 0.02562 * 19 18 17 21 21 C 1.47805 * 120.46085 * 179.97438 * 20 19 18 22 22 O 1.21457 * 120.00171 * 359.97438 * 21 20 19 23 23 O 1.34708 * 120.00190 * 180.02562 * 21 20 19 24 24 C 1.45196 * 117.00282 * 179.97438 * 23 21 20 25 25 C 1.39803 * 119.08166 * 0.02562 * 20 19 18 26 26 N 1.31396 * 120.71327 * 359.97438 * 25 20 19 27 27 H 1.09003 * 109.46785 * 300.00787 * 1 2 3 28 28 H 1.08996 * 109.47320 * 59.99768 * 1 2 3 29 29 H 1.08998 * 109.47761 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47856 * 59.99819 * 5 3 2 31 31 H 1.09000 * 109.47239 * 299.99318 * 5 3 2 32 32 H 0.96997 * 119.99643 * 184.91432 * 10 9 7 33 33 H 1.08006 * 120.40001 * 0.27788 * 18 17 15 34 34 H 1.08003 * 120.81655 * 180.02562 * 19 18 17 35 35 H 1.09005 * 109.47140 * 59.99957 * 24 23 21 36 36 H 1.09004 * 109.47720 * 179.97438 * 24 23 21 37 37 H 1.09001 * 109.47416 * 300.00190 * 24 23 21 38 38 H 1.07995 * 119.64302 * 179.97438 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4035 2.2093 -0.0005 5 6 3.5663 1.2747 -0.0006 6 7 3.9818 2.6795 -0.0011 7 6 4.3148 3.2928 -1.1754 8 1 4.2673 2.7435 -2.1040 9 6 4.7156 4.6264 -1.1751 10 7 5.9719 4.9340 -0.9522 11 14 3.4653 5.9775 -1.4921 12 1 2.4701 5.9994 -0.3901 13 1 4.1594 7.2886 -1.5583 14 1 2.7724 5.7185 -2.7798 15 6 4.0355 3.3668 1.1570 16 8 4.2889 4.5558 1.1470 17 6 3.7857 2.6737 2.4416 18 6 3.9820 3.3565 3.6417 19 6 3.7459 2.7017 4.8370 20 6 3.3167 1.3697 4.7923 21 6 3.0512 0.6256 6.0415 22 8 3.2055 1.1692 7.1166 23 8 2.6391 -0.6557 5.9877 24 6 2.3981 -1.3245 7.2537 25 6 3.1437 0.7529 3.5497 26 7 3.3787 1.4094 2.4360 27 1 -0.3633 0.5140 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 3.9558 0.7807 -0.8908 31 1 3.9564 0.7805 0.8892 32 1 6.2382 5.8640 -0.8812 33 1 4.3097 4.3857 3.6377 34 1 3.8891 3.2054 5.7816 35 1 1.6240 -0.7907 7.8051 36 1 2.0714 -2.3476 7.0679 37 1 3.3177 -1.3369 7.8389 38 1 2.8133 -0.2743 3.5046 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348783882.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:35 Heat of formation + Delta-G solvation = -111.711849 kcal Electronic energy + Delta-G solvation = -27731.710095 eV Core-core repulsion = 23542.398034 eV Total energy + Delta-G solvation = -4189.312061 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.109 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.53488 -40.04725 -39.26124 -37.89279 -36.29365 -35.88652 -34.34233 -33.19385 -32.00400 -31.04700 -28.71119 -27.88565 -26.64929 -25.74001 -23.87430 -23.02451 -21.50186 -20.81710 -20.02670 -18.07301 -17.52265 -17.16877 -17.00694 -16.62431 -16.26160 -16.00636 -15.62366 -15.50090 -14.98055 -14.38382 -14.18352 -14.13476 -13.85674 -13.40126 -13.22999 -13.00927 -12.88732 -12.63770 -12.53854 -12.15859 -12.13567 -11.86690 -11.69999 -11.52850 -11.19100 -10.79528 -10.74655 -10.49447 -10.37391 -10.31001 -10.03551 -9.54830 -9.19101 -8.88241 -8.67584 -8.59551 -7.84183 -7.25255 -3.66369 0.60776 1.73947 2.57655 2.79431 2.92156 3.03408 3.20498 3.30464 3.44432 3.80909 3.89461 4.36703 4.53520 4.72389 4.82714 5.00140 5.04904 5.10750 5.23299 5.32277 5.34316 5.40896 5.42411 5.47742 5.56487 5.73139 5.79836 5.87240 6.12403 6.31952 6.40686 6.44178 6.61497 6.85467 6.88600 7.06448 7.41615 7.88260 8.10544 8.28265 8.37139 8.67368 8.92692 9.63420 9.98361 Molecular weight = 322.11amu Principal moments of inertia in cm(-1) A = 0.014561 B = 0.004647 C = 0.003800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1922.429493 B = 6023.914700 C = 7365.895739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.363 6.363 3 C 0.462 3.538 4 O -0.497 6.497 5 C 0.095 3.905 6 N -0.343 5.343 7 C -0.385 4.385 8 H 0.120 0.880 9 C 0.187 3.813 10 N -0.677 5.677 11 Si 0.881 3.119 12 H -0.257 1.257 13 H -0.286 1.286 14 H -0.275 1.275 15 C 0.398 3.602 16 O -0.586 6.586 17 C 0.143 3.857 18 C -0.159 4.159 19 C -0.014 4.014 20 C -0.240 4.240 21 C 0.519 3.481 22 O -0.523 6.523 23 O -0.358 6.358 24 C 0.038 3.962 25 C 0.170 3.830 26 N -0.514 5.514 27 H 0.057 0.943 28 H 0.057 0.943 29 H 0.094 0.906 30 H 0.105 0.895 31 H 0.160 0.840 32 H 0.293 0.707 33 H 0.144 0.856 34 H 0.137 0.863 35 H 0.060 0.940 36 H 0.099 0.901 37 H 0.061 0.939 38 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.795 -11.650 5.193 13.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.280 6.280 3 C 0.303 3.697 4 O -0.382 6.382 5 C -0.031 4.031 6 N -0.053 5.053 7 C -0.508 4.508 8 H 0.138 0.862 9 C -0.051 4.051 10 N -0.297 5.297 11 Si 0.702 3.298 12 H -0.181 1.181 13 H -0.212 1.212 14 H -0.201 1.201 15 C 0.200 3.800 16 O -0.476 6.476 17 C 0.010 3.990 18 C -0.180 4.180 19 C -0.038 4.038 20 C -0.245 4.245 21 C 0.366 3.634 22 O -0.413 6.413 23 O -0.275 6.275 24 C -0.056 4.056 25 C 0.008 3.992 26 N -0.229 5.229 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.113 0.887 30 H 0.123 0.877 31 H 0.176 0.824 32 H 0.105 0.895 33 H 0.162 0.838 34 H 0.155 0.845 35 H 0.079 0.921 36 H 0.118 0.882 37 H 0.079 0.921 38 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -4.721 -10.981 4.707 12.847 hybrid contribution -0.780 0.961 1.080 1.643 sum -5.501 -10.020 5.788 12.813 Atomic orbital electron populations 1.23103 0.77707 1.02719 1.02102 1.86485 1.22330 1.34255 1.84959 1.24329 0.92565 0.81100 0.71725 1.90672 1.66699 1.36314 1.44555 1.21815 0.87480 0.86155 1.07646 1.43703 1.47003 1.07772 1.06778 1.19273 1.48797 0.96503 0.86210 0.86249 1.25194 0.93868 0.99045 0.87021 1.70395 1.19144 1.23195 1.16940 0.86990 0.84846 0.78844 0.79106 1.18099 1.21194 1.20093 1.16845 0.94333 0.87345 0.81481 1.90488 1.60680 1.13831 1.82641 1.21579 0.93134 0.89010 0.95241 1.21714 1.03359 1.01990 0.90946 1.21402 0.91763 0.91908 0.98737 1.19670 1.16893 0.96222 0.91683 1.21119 0.73122 0.79812 0.89386 1.90778 1.50169 1.69133 1.31243 1.86541 1.78570 1.26559 1.35792 1.23204 1.01638 0.96831 0.83880 1.23021 0.90236 0.99163 0.86767 1.67975 1.16835 1.09011 1.29030 0.92471 0.92469 0.88745 0.87686 0.82408 0.89524 0.83848 0.84524 0.92131 0.88219 0.92071 0.82218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.49 10.56 101.05 1.07 1.55 16 2 O -0.36 -5.83 10.56 -39.25 -0.41 -6.24 16 3 C 0.46 9.02 6.82 36.00 0.25 9.27 16 4 O -0.50 -11.64 16.00 -18.75 -0.30 -11.94 16 5 C 0.10 1.83 5.57 -5.19 -0.03 1.80 16 6 N -0.34 -8.23 2.18 -117.10 -0.26 -8.49 16 7 C -0.39 -9.59 9.48 -15.05 -0.14 -9.73 16 8 H 0.12 2.75 8.01 -52.49 -0.42 2.33 16 9 C 0.19 4.73 3.00 -17.43 -0.05 4.68 16 10 N -0.68 -17.09 13.52 55.51 0.75 -16.34 16 11 Si 0.88 20.99 28.28 -169.99 -4.81 16.18 16 12 H -0.26 -6.85 7.11 56.52 0.40 -6.44 16 13 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 14 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 15 C 0.40 10.17 7.30 -12.22 -0.09 10.08 16 16 O -0.59 -16.52 12.34 5.30 0.07 -16.46 16 17 C 0.14 3.15 6.65 -82.94 -0.55 2.60 16 18 C -0.16 -3.20 9.62 -39.09 -0.38 -3.57 16 19 C -0.01 -0.24 9.71 -38.88 -0.38 -0.62 16 20 C -0.24 -4.03 5.90 -104.73 -0.62 -4.65 16 21 C 0.52 8.25 7.91 34.64 0.27 8.52 16 22 O -0.52 -9.29 16.20 -19.23 -0.31 -9.60 16 23 O -0.36 -4.73 9.84 -40.51 -0.40 -5.13 16 24 C 0.04 0.36 10.56 101.05 1.07 1.43 16 25 C 0.17 2.80 10.78 -17.15 -0.18 2.62 16 26 N -0.51 -9.85 5.06 -9.48 -0.05 -9.90 16 27 H 0.06 0.77 8.13 -51.93 -0.42 0.34 16 28 H 0.06 0.73 8.13 -51.93 -0.42 0.31 16 29 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.11 1.72 7.94 -51.93 -0.41 1.31 16 31 H 0.16 2.87 5.07 -55.63 -0.28 2.59 16 32 H 0.29 6.84 8.31 -40.82 -0.34 6.50 16 33 H 0.14 2.91 7.64 -52.48 -0.40 2.51 16 34 H 0.14 2.17 7.73 -52.48 -0.41 1.77 16 35 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.10 0.63 8.14 -51.93 -0.42 0.20 16 37 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.16 2.14 7.62 -52.49 -0.40 1.74 16 LS Contribution 340.29 15.07 5.13 5.13 Total: -1.00 -32.50 340.29 -4.35 -36.85 By element: Atomic # 1 Polarization: 5.94 SS G_CDS: -3.99 Total: 1.95 kcal Atomic # 6 Polarization: 23.75 SS G_CDS: 0.23 Total: 23.98 kcal Atomic # 7 Polarization: -35.17 SS G_CDS: 0.45 Total: -34.72 kcal Atomic # 8 Polarization: -48.01 SS G_CDS: -1.36 Total: -49.37 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -4.81 Total: 16.18 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -32.50 -4.35 -36.85 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348783882.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.865 kcal (2) G-P(sol) polarization free energy of solvation -32.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds