Wall clock time and date at job start Fri Apr 10 2020 18:25:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34228 * 117.00262 * 2 1 4 4 O 1.20822 * 120.00350 * 359.97438 * 3 2 1 5 5 C 1.50698 * 119.99775 * 180.02562 * 3 2 1 6 6 N 1.46499 * 109.47033 * 179.97438 * 5 3 2 7 7 C 1.36601 * 119.99872 * 262.92150 * 6 5 3 8 8 H 1.08002 * 120.00363 * 0.29682 * 7 6 5 9 9 C 1.39248 * 120.00141 * 180.29190 * 7 6 5 10 10 N 1.31243 * 119.99629 * 85.60899 * 9 7 6 11 11 Si 1.86792 * 120.00135 * 265.61157 * 9 7 6 12 12 H 1.48500 * 109.47295 * 64.98236 * 11 9 7 13 13 H 1.48502 * 109.46969 * 184.97907 * 11 9 7 14 14 H 1.48500 * 109.47138 * 304.97910 * 11 9 7 15 15 C 1.34771 * 120.00214 * 82.92292 * 6 5 3 16 16 O 1.21570 * 119.99955 * 185.15760 * 15 6 5 17 17 C 1.48087 * 119.99992 * 5.15731 * 15 6 5 18 18 C 1.39466 * 119.57818 * 173.21447 * 17 15 6 19 19 C 1.38324 * 119.19577 * 179.97438 * 18 17 15 20 20 C 1.40015 * 118.36599 * 0.02562 * 19 18 17 21 21 C 1.47805 * 120.46085 * 179.97438 * 20 19 18 22 22 O 1.21457 * 120.00171 * 359.97438 * 21 20 19 23 23 O 1.34708 * 120.00190 * 180.02562 * 21 20 19 24 24 C 1.45196 * 117.00282 * 179.97438 * 23 21 20 25 25 C 1.39803 * 119.08166 * 0.02562 * 20 19 18 26 26 N 1.31396 * 120.71327 * 359.97438 * 25 20 19 27 27 H 1.09003 * 109.46785 * 300.00787 * 1 2 3 28 28 H 1.08996 * 109.47320 * 59.99768 * 1 2 3 29 29 H 1.08998 * 109.47761 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47856 * 59.99819 * 5 3 2 31 31 H 1.09000 * 109.47239 * 299.99318 * 5 3 2 32 32 H 0.96997 * 119.99643 * 184.91432 * 10 9 7 33 33 H 1.08006 * 120.40001 * 0.27788 * 18 17 15 34 34 H 1.08003 * 120.81655 * 180.02562 * 19 18 17 35 35 H 1.09005 * 109.47140 * 59.99957 * 24 23 21 36 36 H 1.09004 * 109.47720 * 179.97438 * 24 23 21 37 37 H 1.09001 * 109.47416 * 300.00190 * 24 23 21 38 38 H 1.07995 * 119.64302 * 179.97438 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4035 2.2093 -0.0005 5 6 3.5663 1.2747 -0.0006 6 7 3.9818 2.6795 -0.0011 7 6 4.3148 3.2928 -1.1754 8 1 4.2673 2.7435 -2.1040 9 6 4.7156 4.6264 -1.1751 10 7 5.9719 4.9340 -0.9522 11 14 3.4653 5.9775 -1.4921 12 1 2.4701 5.9994 -0.3901 13 1 4.1594 7.2886 -1.5583 14 1 2.7724 5.7185 -2.7798 15 6 4.0355 3.3668 1.1570 16 8 4.2889 4.5558 1.1470 17 6 3.7857 2.6737 2.4416 18 6 3.9820 3.3565 3.6417 19 6 3.7459 2.7017 4.8370 20 6 3.3167 1.3697 4.7923 21 6 3.0512 0.6256 6.0415 22 8 3.2055 1.1692 7.1166 23 8 2.6391 -0.6557 5.9877 24 6 2.3981 -1.3245 7.2537 25 6 3.1437 0.7529 3.5497 26 7 3.3787 1.4094 2.4360 27 1 -0.3633 0.5140 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 3.9558 0.7807 -0.8908 31 1 3.9564 0.7805 0.8892 32 1 6.2382 5.8640 -0.8812 33 1 4.3097 4.3857 3.6377 34 1 3.8891 3.2054 5.7816 35 1 1.6240 -0.7907 7.8051 36 1 2.0714 -2.3476 7.0679 37 1 3.3177 -1.3369 7.8389 38 1 2.8133 -0.2743 3.5046 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000348783882.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:34 Heat of formation + Delta-G solvation = -132.381597 kcal Electronic energy + Delta-G solvation = -27732.606402 eV Core-core repulsion = 23542.398034 eV Total energy + Delta-G solvation = -4190.208369 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.109 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.03663 -41.45216 -40.75186 -39.54191 -37.52320 -37.37754 -36.13141 -34.94147 -33.60766 -32.64284 -30.14147 -28.94047 -27.94960 -27.22451 -25.41077 -24.56667 -23.00017 -22.21527 -21.60399 -19.68391 -18.99230 -18.63432 -18.37055 -18.15816 -17.41204 -17.40223 -17.13173 -17.00605 -16.75099 -15.95583 -15.80671 -15.60503 -15.31504 -14.73318 -14.64443 -14.45073 -14.28729 -14.19297 -14.09093 -13.84172 -13.48586 -13.24508 -13.00906 -12.89528 -12.74503 -12.64531 -12.14155 -11.83635 -11.79969 -11.67749 -11.65457 -11.09725 -11.04327 -10.57499 -10.31521 -10.24274 -9.70540 -9.09054 -5.56053 -0.85970 0.18776 1.15137 1.24207 1.39361 1.42515 1.53811 1.62270 1.71546 2.02127 2.27805 2.58998 2.84665 3.07700 3.21866 3.66334 3.77585 3.81234 4.01285 4.13522 4.18009 4.34314 4.35412 4.38918 4.41150 4.41655 4.67373 4.74912 4.75258 4.86196 4.91940 4.95520 5.12901 5.25848 5.46539 5.47309 5.72079 6.39807 6.59199 6.69042 6.90338 7.00105 7.24103 7.85295 8.14914 Molecular weight = 322.11amu Principal moments of inertia in cm(-1) A = 0.014561 B = 0.004647 C = 0.003800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1922.429493 B = 6023.914700 C = 7365.895739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.353 6.353 3 C 0.469 3.531 4 O -0.543 6.543 5 C 0.093 3.907 6 N -0.353 5.353 7 C -0.466 4.466 8 H 0.121 0.879 9 C 0.192 3.808 10 N -0.700 5.700 11 Si 0.889 3.111 12 H -0.306 1.306 13 H -0.273 1.273 14 H -0.262 1.262 15 C 0.381 3.619 16 O -0.623 6.623 17 C 0.139 3.861 18 C -0.165 4.165 19 C 0.001 3.999 20 C -0.212 4.212 21 C 0.528 3.472 22 O -0.535 6.535 23 O -0.351 6.351 24 C 0.029 3.971 25 C 0.174 3.826 26 N -0.507 5.507 27 H 0.050 0.950 28 H 0.052 0.948 29 H 0.141 0.859 30 H 0.129 0.871 31 H 0.171 0.829 32 H 0.294 0.706 33 H 0.136 0.864 34 H 0.161 0.839 35 H 0.062 0.938 36 H 0.138 0.862 37 H 0.064 0.936 38 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.892 -15.523 8.576 18.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.268 6.268 3 C 0.312 3.688 4 O -0.432 6.432 5 C -0.031 4.031 6 N -0.063 5.063 7 C -0.585 4.585 8 H 0.138 0.862 9 C -0.045 4.045 10 N -0.320 5.320 11 Si 0.712 3.288 12 H -0.233 1.233 13 H -0.199 1.199 14 H -0.187 1.187 15 C 0.181 3.819 16 O -0.516 6.516 17 C 0.006 3.994 18 C -0.187 4.187 19 C -0.024 4.024 20 C -0.216 4.216 21 C 0.374 3.626 22 O -0.427 6.427 23 O -0.267 6.267 24 C -0.063 4.063 25 C 0.014 3.986 26 N -0.220 5.220 27 H 0.069 0.931 28 H 0.071 0.929 29 H 0.159 0.841 30 H 0.147 0.853 31 H 0.187 0.813 32 H 0.106 0.894 33 H 0.154 0.846 34 H 0.179 0.821 35 H 0.081 0.919 36 H 0.156 0.844 37 H 0.083 0.917 38 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -5.812 -14.932 8.031 17.923 hybrid contribution -0.691 1.746 0.876 2.072 sum -6.503 -13.186 8.907 17.190 Atomic orbital electron populations 1.23469 0.75575 1.05582 1.01636 1.86468 1.24256 1.32003 1.84109 1.24339 0.92638 0.81286 0.70519 1.90662 1.67619 1.38063 1.46879 1.22011 0.87508 0.84321 1.09301 1.43509 1.47758 1.09208 1.05849 1.19048 1.55310 0.97281 0.86850 0.86159 1.25307 0.93570 0.99688 0.85893 1.70472 1.19725 1.23295 1.18540 0.86859 0.84481 0.79842 0.77665 1.23348 1.19872 1.18718 1.17496 0.93979 0.87379 0.83013 1.90429 1.61560 1.15713 1.83927 1.21493 0.93192 0.90258 0.94498 1.21790 1.03475 1.02049 0.91376 1.21679 0.89829 0.92250 0.98630 1.20054 1.12888 0.95779 0.92920 1.20784 0.72826 0.80795 0.88226 1.90803 1.50447 1.69802 1.31636 1.86521 1.77494 1.24712 1.38002 1.23631 1.02054 0.98282 0.82361 1.23706 0.88781 1.00593 0.85563 1.67995 1.15834 1.07710 1.30498 0.93126 0.92930 0.84090 0.85304 0.81265 0.89415 0.84566 0.82114 0.91912 0.84414 0.91736 0.77923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 27. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.71 10.56 113.37 1.20 1.91 16 2 O -0.35 -10.50 10.56 -51.40 -0.54 -11.05 16 3 C 0.47 18.12 6.82 71.24 0.49 18.60 16 4 O -0.54 -25.99 16.00 21.98 0.35 -25.64 16 5 C 0.09 3.59 5.57 85.63 0.48 4.06 16 6 N -0.35 -17.62 2.18 -642.67 -1.40 -19.03 16 7 C -0.47 -24.69 9.48 84.19 0.80 -23.89 16 8 H 0.12 6.00 8.01 -2.91 -0.02 5.97 16 9 C 0.19 10.36 3.00 85.02 0.25 10.62 16 10 N -0.70 -37.47 13.52 21.71 0.29 -37.17 16 11 Si 0.89 45.19 28.28 68.60 1.94 47.13 16 12 H -0.31 -17.85 7.11 99.48 0.71 -17.14 16 13 H -0.27 -12.95 7.11 99.48 0.71 -12.24 16 14 H -0.26 -12.50 7.11 99.48 0.71 -11.79 16 15 C 0.38 20.19 7.30 86.86 0.63 20.83 16 16 O -0.62 -37.08 12.34 -3.94 -0.05 -37.13 16 17 C 0.14 6.05 6.65 41.91 0.28 6.33 16 18 C -0.17 -6.44 9.62 22.59 0.22 -6.22 16 19 C 0.00 0.03 9.71 22.72 0.22 0.25 16 20 C -0.21 -6.10 5.90 -19.94 -0.12 -6.22 16 21 C 0.53 13.89 7.91 70.35 0.56 14.44 16 22 O -0.54 -16.37 16.20 19.97 0.32 -16.04 16 23 O -0.35 -7.15 9.84 -56.17 -0.55 -7.71 16 24 C 0.03 0.39 10.56 113.37 1.20 1.59 16 25 C 0.17 4.89 10.78 85.14 0.92 5.80 16 26 N -0.51 -18.10 5.06 -183.90 -0.93 -19.03 16 27 H 0.05 1.25 8.13 -2.39 -0.02 1.23 16 28 H 0.05 1.28 8.13 -2.39 -0.02 1.26 16 29 H 0.14 1.93 8.14 -2.39 -0.02 1.91 16 30 H 0.13 4.22 7.94 -2.39 -0.02 4.20 16 31 H 0.17 5.91 5.07 -9.70 -0.05 5.86 16 32 H 0.29 14.61 8.31 -92.71 -0.77 13.84 16 33 H 0.14 5.55 7.64 -2.91 -0.02 5.53 16 34 H 0.16 4.41 7.73 -2.91 -0.02 4.39 16 35 H 0.06 0.86 8.14 -2.38 -0.02 0.84 16 36 H 0.14 0.85 8.14 -2.38 -0.02 0.83 16 37 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 38 H 0.20 4.06 7.62 -2.91 -0.02 4.04 16 Total: -1.00 -75.61 340.29 7.62 -67.99 By element: Atomic # 1 Polarization: 8.50 SS G_CDS: 1.08 Total: 9.58 kcal Atomic # 6 Polarization: 40.99 SS G_CDS: 7.12 Total: 48.11 kcal Atomic # 7 Polarization: -73.19 SS G_CDS: -2.04 Total: -75.23 kcal Atomic # 8 Polarization: -97.10 SS G_CDS: -0.47 Total: -97.57 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 1.94 Total: 47.13 kcal Total: -75.61 7.62 -67.99 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348783882.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.394 kcal (2) G-P(sol) polarization free energy of solvation -75.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds