Wall clock time and date at job start Fri Apr 10 2020 18:25:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34229 * 117.00277 * 2 1 4 4 O 1.20825 * 119.99738 * 359.97438 * 3 2 1 5 5 C 1.50696 * 119.99986 * 180.02562 * 3 2 1 6 6 N 1.46500 * 109.46979 * 179.97438 * 5 3 2 7 7 C 1.36778 * 119.99844 * 265.79640 * 6 5 3 8 8 H 1.07996 * 119.99825 * 42.24395 * 7 6 5 9 9 C 1.39118 * 119.99734 * 222.24251 * 7 6 5 10 10 N 1.31316 * 120.00007 * 16.46868 * 9 7 6 11 11 Si 1.86799 * 119.99617 * 196.47397 * 9 7 6 12 12 H 1.48498 * 109.47218 * 64.99736 * 11 9 7 13 13 H 1.48499 * 109.46738 * 184.99619 * 11 9 7 14 14 H 1.48498 * 109.47073 * 304.99439 * 11 9 7 15 15 C 1.34772 * 119.99639 * 85.80277 * 6 5 3 16 16 O 1.21566 * 119.99914 * 175.34621 * 15 6 5 17 17 C 1.48063 * 120.00625 * 355.34497 * 15 6 5 18 18 C 1.39738 * 119.66319 * 174.72064 * 17 15 6 19 19 C 1.38496 * 119.24324 * 180.02562 * 18 17 15 20 20 C 1.38620 * 118.56976 * 359.74890 * 19 18 17 21 21 C 1.39610 * 119.25995 * 0.49267 * 20 19 18 22 22 C 1.48119 * 119.65195 * 179.76973 * 21 20 19 23 23 O 1.21423 * 120.00133 * 5.31856 * 22 21 20 24 24 O 1.34674 * 119.99972 * 185.03140 * 22 21 20 25 25 C 1.45202 * 117.00159 * 175.12735 * 24 22 21 26 26 N 1.32401 * 119.65521 * 354.73930 * 17 15 6 27 27 H 1.08994 * 109.47077 * 60.00014 * 1 2 3 28 28 H 1.09006 * 109.47348 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.47446 * 300.00180 * 1 2 3 30 30 H 1.09006 * 109.47299 * 59.99195 * 5 3 2 31 31 H 1.08998 * 109.47152 * 300.00005 * 5 3 2 32 32 H 0.97002 * 119.99660 * 184.89008 * 10 9 7 33 33 H 1.07999 * 120.38049 * 359.97438 * 18 17 15 34 34 H 1.08008 * 120.71412 * 180.02562 * 19 18 17 35 35 H 1.08006 * 120.37363 * 180.26804 * 20 19 18 36 36 H 1.09001 * 109.47229 * 180.02562 * 25 24 22 37 37 H 1.09009 * 109.46936 * 300.00369 * 25 24 22 38 38 H 1.08996 * 109.47261 * 60.00420 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2748 -0.0006 6 7 3.9817 2.6796 -0.0011 7 6 4.2585 3.3105 -1.1827 8 1 3.6205 3.1551 -2.0401 9 6 5.3617 4.1524 -1.2799 10 7 6.3095 4.1002 -0.3726 11 14 5.4946 5.3572 -2.7012 12 1 4.4038 6.3601 -2.6037 13 1 6.8082 6.0475 -2.6437 14 1 5.3777 4.6219 -3.9861 15 6 4.0913 3.3503 1.1628 16 8 4.5167 4.4890 1.1704 17 6 3.6935 2.7002 2.4322 18 6 3.9128 3.3590 3.6449 19 6 3.5379 2.7427 4.8271 20 6 2.9501 1.4889 4.7637 21 6 2.7645 0.8844 3.5190 22 6 2.1420 -0.4574 3.4415 23 8 1.7085 -0.9845 4.4458 24 8 2.0516 -1.0903 2.2562 25 6 1.5298 -2.4452 2.2704 26 7 3.1341 1.5005 2.4066 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 3.9557 0.7807 -0.8908 31 1 3.9564 0.7805 0.8891 32 1 7.0429 4.7345 -0.4002 33 1 4.3702 4.3372 3.6602 34 1 3.6959 3.2304 5.7778 35 1 2.6425 0.9836 5.6673 36 1 1.5104 -2.8378 1.2538 37 1 2.1689 -3.0742 2.8904 38 1 0.5189 -2.4410 2.6779 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348805113.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:40 Heat of formation + Delta-G solvation = -116.874184 kcal Electronic energy + Delta-G solvation = -28821.090015 eV Core-core repulsion = 24631.554099 eV Total energy + Delta-G solvation = -4189.535917 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.109 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.76932 -39.84462 -39.32110 -37.75187 -36.36005 -35.67095 -34.22431 -32.69100 -31.98328 -31.07595 -28.36349 -27.80215 -26.26173 -25.40418 -24.54436 -23.31050 -21.43481 -20.63863 -19.68908 -17.94753 -17.54726 -16.93502 -16.69954 -16.35291 -16.28371 -15.93521 -15.58514 -15.35635 -15.31939 -14.52716 -14.21963 -13.93932 -13.76041 -13.28331 -13.24849 -12.91567 -12.85721 -12.62635 -12.29409 -12.09268 -11.77230 -11.53580 -11.42768 -11.30181 -10.89539 -10.77392 -10.72751 -10.67697 -10.29265 -10.13770 -9.84126 -9.71535 -9.30390 -8.92991 -8.91390 -8.29365 -7.30451 -6.21198 -3.98211 0.64388 1.18020 2.45892 2.67319 3.14690 3.29145 3.33705 3.35526 3.42703 3.73252 4.15155 4.28023 4.64527 4.74908 4.88690 5.06573 5.13073 5.15907 5.18852 5.19120 5.33269 5.41944 5.50810 5.52224 5.64438 5.68329 5.80881 5.94298 6.09734 6.13372 6.25391 6.35577 6.43083 6.73730 7.10821 7.49318 7.59407 7.97337 8.11210 8.64537 8.85036 8.97415 9.44284 10.07819 10.83147 Molecular weight = 322.11amu Principal moments of inertia in cm(-1) A = 0.015428 B = 0.005578 C = 0.004446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1814.388067 B = 5018.871694 C = 6295.625222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.350 6.350 3 C 0.464 3.536 4 O -0.510 6.510 5 C 0.120 3.880 6 N -0.406 5.406 7 C -0.333 4.333 8 H 0.086 0.914 9 C 0.064 3.936 10 N -0.811 5.811 11 Si 0.917 3.083 12 H -0.274 1.274 13 H -0.285 1.285 14 H -0.274 1.274 15 C 0.508 3.492 16 O -0.513 6.513 17 C 0.117 3.883 18 C -0.094 4.094 19 C -0.088 4.088 20 C -0.114 4.114 21 C 0.079 3.921 22 C 0.525 3.475 23 O -0.510 6.510 24 O -0.315 6.315 25 C 0.037 3.963 26 N -0.429 5.429 27 H 0.053 0.947 28 H 0.087 0.913 29 H 0.049 0.951 30 H 0.100 0.900 31 H 0.125 0.875 32 H 0.269 0.731 33 H 0.153 0.847 34 H 0.146 0.854 35 H 0.145 0.855 36 H 0.104 0.896 37 H 0.059 0.941 38 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.389 -10.941 6.660 14.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.266 6.266 3 C 0.306 3.694 4 O -0.397 6.397 5 C -0.006 4.006 6 N -0.125 5.125 7 C -0.460 4.460 8 H 0.103 0.897 9 C -0.148 4.148 10 N -0.444 5.444 11 Si 0.744 3.256 12 H -0.199 1.199 13 H -0.210 1.210 14 H -0.200 1.200 15 C 0.295 3.705 16 O -0.389 6.389 17 C -0.024 4.024 18 C -0.115 4.115 19 C -0.114 4.114 20 C -0.135 4.135 21 C -0.059 4.059 22 C 0.368 3.632 23 O -0.398 6.398 24 O -0.229 6.229 25 C -0.057 4.057 26 N -0.146 5.146 27 H 0.072 0.928 28 H 0.106 0.894 29 H 0.068 0.932 30 H 0.118 0.882 31 H 0.142 0.858 32 H 0.079 0.921 33 H 0.171 0.829 34 H 0.163 0.837 35 H 0.163 0.837 36 H 0.123 0.877 37 H 0.078 0.922 38 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -6.463 -10.621 6.137 13.865 hybrid contribution -0.227 0.798 0.384 0.914 sum -6.691 -9.823 6.521 13.557 Atomic orbital electron populations 1.22967 0.78920 1.02001 1.01482 1.86549 1.21192 1.34299 1.84605 1.24673 0.92969 0.80878 0.70888 1.90612 1.66879 1.36574 1.45610 1.21409 0.86350 0.87609 1.05239 1.42792 1.57311 1.06553 1.05886 1.19178 1.08956 1.28504 0.89331 0.89654 1.25256 0.93402 0.98524 0.97650 1.69860 1.08383 1.32528 1.33663 0.86181 0.77521 0.80990 0.80954 1.19924 1.21011 1.19959 1.17326 0.85298 0.86041 0.81813 1.90646 1.46150 1.17455 1.84638 1.22241 0.94581 0.89132 0.96492 1.22420 0.95988 1.01499 0.91597 1.21542 0.96618 0.94200 0.99023 1.22008 0.98068 0.95669 0.97772 1.20072 1.01772 0.93379 0.90645 1.20931 0.75550 0.85024 0.81668 1.90806 1.45293 1.66928 1.36789 1.86838 1.75561 1.28998 1.31488 1.23282 0.98843 0.79729 1.03841 1.68130 1.08461 1.09083 1.28898 0.92848 0.89414 0.93200 0.88172 0.85814 0.92077 0.82950 0.83670 0.83720 0.87746 0.92207 0.92279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.56 10.56 101.05 1.07 1.62 16 2 O -0.35 -5.81 8.35 -46.16 -0.39 -6.20 16 3 C 0.46 9.48 6.28 36.00 0.23 9.71 16 4 O -0.51 -12.19 16.09 -18.75 -0.30 -12.49 16 5 C 0.12 2.53 5.54 -5.20 -0.03 2.50 16 6 N -0.41 -10.42 2.04 -117.10 -0.24 -10.66 16 7 C -0.33 -9.10 9.25 -15.02 -0.14 -9.24 16 8 H 0.09 2.27 7.89 -52.49 -0.41 1.86 16 9 C 0.06 1.75 4.46 -17.45 -0.08 1.67 16 10 N -0.81 -23.13 11.23 55.50 0.62 -22.50 16 11 Si 0.92 21.34 29.59 -169.99 -5.03 16.31 16 12 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 13 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 14 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 15 C 0.51 13.22 6.91 -12.23 -0.08 13.14 16 16 O -0.51 -14.87 13.55 5.31 0.07 -14.80 16 17 C 0.12 2.49 6.59 -83.03 -0.55 1.94 16 18 C -0.09 -1.65 9.63 -38.93 -0.38 -2.02 16 19 C -0.09 -1.20 10.16 -39.35 -0.40 -1.60 16 20 C -0.11 -1.61 9.63 -38.93 -0.38 -1.99 16 21 C 0.08 1.31 6.75 -83.05 -0.56 0.75 16 22 C 0.52 8.22 7.94 34.79 0.28 8.50 16 23 O -0.51 -8.19 16.11 -19.21 -0.31 -8.50 16 24 O -0.32 -4.51 8.17 -47.36 -0.39 -4.90 16 25 C 0.04 0.37 10.59 101.05 1.07 1.44 16 26 N -0.43 -8.30 4.60 -6.40 -0.03 -8.32 16 27 H 0.05 0.73 8.13 -51.93 -0.42 0.30 16 28 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.05 0.72 8.13 -51.93 -0.42 0.30 16 30 H 0.10 1.93 8.00 -51.93 -0.42 1.51 16 31 H 0.12 2.49 5.57 -51.93 -0.29 2.20 16 32 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 33 H 0.15 2.64 7.65 -52.49 -0.40 2.24 16 34 H 0.15 1.38 8.06 -52.48 -0.42 0.96 16 35 H 0.15 1.71 7.65 -52.48 -0.40 1.31 16 36 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.06 0.55 8.14 -51.92 -0.42 0.13 16 38 H 0.06 0.55 8.10 -51.93 -0.42 0.13 16 LS Contribution 337.23 15.07 5.08 5.08 Total: -1.00 -34.87 337.23 -4.87 -39.74 By element: Atomic # 1 Polarization: 4.84 SS G_CDS: -4.01 Total: 0.83 kcal Atomic # 6 Polarization: 26.37 SS G_CDS: 0.05 Total: 26.42 kcal Atomic # 7 Polarization: -41.84 SS G_CDS: 0.35 Total: -41.49 kcal Atomic # 8 Polarization: -45.58 SS G_CDS: -1.31 Total: -46.89 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.03 Total: 16.31 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -34.87 -4.87 -39.74 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348805113.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.137 kcal (2) G-P(sol) polarization free energy of solvation -34.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds