Wall clock time and date at job start Fri Apr 10 2020 18:25:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34671 * 117.00208 * 2 1 4 4 O 1.21429 * 119.99805 * 359.97438 * 3 2 1 5 5 C 1.48060 * 119.99857 * 179.97438 * 3 2 1 6 6 C 1.40021 * 120.89355 * 359.97438 * 5 3 2 7 7 C 1.37987 * 119.15329 * 180.02562 * 6 5 3 8 8 N 1.31892 * 120.99351 * 359.72531 * 7 6 5 9 9 C 1.32265 * 121.97338 * 0.56099 * 8 7 6 10 10 N 1.39410 * 119.63565 * 179.70562 * 9 8 7 11 11 C 1.34769 * 119.99897 * 4.81289 * 10 9 8 12 12 O 1.21573 * 120.00486 * 354.90950 * 11 10 9 13 13 N 1.34783 * 120.00161 * 174.62949 * 11 10 9 14 14 C 1.46496 * 120.00253 * 180.27410 * 13 11 10 15 15 C 1.50701 * 109.47145 * 180.02562 * 14 13 11 16 16 O 1.21299 * 119.99988 * 0.02562 * 15 14 13 17 17 N 1.34771 * 120.00307 * 179.97438 * 15 14 13 18 18 C 1.37096 * 120.00210 * 180.02562 * 17 15 14 19 19 H 1.08000 * 120.00179 * 0.02562 * 18 17 15 20 20 C 1.38956 * 119.99786 * 179.97438 * 18 17 15 21 21 N 1.31405 * 120.00035 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 119.99855 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.47094 * 90.00346 * 22 20 18 24 24 H 1.48494 * 109.47557 * 210.00157 * 22 20 18 25 25 H 1.48501 * 109.47155 * 330.00402 * 22 20 18 26 26 C 1.39027 * 120.73253 * 359.44357 * 9 8 7 27 27 H 1.09000 * 109.47073 * 299.99968 * 1 2 3 28 28 H 1.09003 * 109.47361 * 59.99793 * 1 2 3 29 29 H 1.09006 * 109.47516 * 180.02562 * 1 2 3 30 30 H 1.08003 * 120.42223 * 359.97438 * 6 5 3 31 31 H 1.08002 * 119.50131 * 180.02562 * 7 6 5 32 32 H 0.97008 * 120.00088 * 184.80462 * 10 9 8 33 33 H 0.97001 * 119.99438 * 0.28093 * 13 11 10 34 34 H 1.09004 * 109.46874 * 300.00379 * 14 13 11 35 35 H 1.08994 * 109.47034 * 60.00083 * 14 13 11 36 36 H 0.97007 * 119.99957 * 0.02562 * 17 15 14 37 37 H 0.97001 * 120.00143 * 179.97438 * 21 20 18 38 38 H 1.07991 * 120.54141 * 180.29579 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0634 1.1999 0.0000 4 8 1.4020 2.2183 -0.0005 5 6 3.5420 1.2773 0.0006 6 6 4.3227 0.1150 0.0017 7 6 5.6979 0.2289 0.0027 8 7 6.2814 1.4117 -0.0027 9 6 5.5850 2.5362 0.0016 10 7 6.2523 3.7603 0.0017 11 6 7.5956 3.7954 -0.1005 12 8 8.2327 2.7600 -0.0995 13 7 8.2325 4.9783 -0.2094 14 6 9.6923 5.0162 -0.3265 15 6 10.1507 6.4479 -0.4331 16 8 9.3379 7.3480 -0.4127 17 7 11.4637 6.7281 -0.5500 18 6 11.8808 8.0306 -0.6464 19 1 11.1571 8.8321 -0.6282 20 6 13.2346 8.3195 -0.7664 21 7 14.1152 7.3443 -0.7880 22 14 13.8028 10.0940 -0.8985 23 1 14.0623 10.6331 0.4607 24 1 15.0501 10.1560 -1.7020 25 1 12.7477 10.9038 -1.5590 26 6 4.1950 2.5111 0.0006 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 3.8546 -0.8583 0.0025 31 1 6.3055 -0.6639 0.0031 32 1 5.7497 4.5867 0.0753 33 1 7.7242 5.8044 -0.2101 34 1 10.1396 4.5564 0.5548 35 1 9.9996 4.4687 -1.2174 36 1 12.1138 6.0083 -0.5660 37 1 15.0603 7.5460 -0.8722 38 1 3.6295 3.4311 -0.0007 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000350692881.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:42 Heat of formation + Delta-G solvation = -89.602280 kcal Electronic energy + Delta-G solvation = -25169.104977 eV Core-core repulsion = 21013.044410 eV Total energy + Delta-G solvation = -4156.060567 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.116 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.34232 -40.54905 -39.36961 -38.18932 -36.94668 -35.13730 -34.44634 -33.72465 -33.02004 -31.40722 -30.46385 -28.41307 -27.56136 -25.32245 -24.55574 -23.48891 -22.12794 -20.56959 -19.65706 -19.03349 -18.56934 -17.97851 -17.65905 -16.85716 -16.83697 -16.01090 -15.91369 -15.79380 -15.45546 -15.01108 -14.62737 -14.56186 -14.38291 -14.04205 -13.94759 -13.92350 -13.51064 -13.47445 -12.74810 -12.30292 -12.22138 -12.07362 -11.64289 -11.30758 -11.21539 -11.14993 -10.98042 -10.47211 -10.42785 -10.31664 -10.26288 -9.64961 -9.34538 -8.90948 -8.65425 -8.47468 -8.11568 -6.52642 -3.94775 0.22393 0.78531 2.00961 2.15774 2.44142 3.10764 3.17156 3.21693 3.26848 3.67025 3.73856 3.86635 4.10116 4.11915 4.37243 4.54983 4.60182 4.63458 4.71768 4.83318 4.86102 5.03201 5.16008 5.27217 5.31880 5.62727 5.79291 5.85071 5.91633 5.96150 6.04904 6.39855 6.63437 6.69377 7.19285 7.44886 7.64346 7.90699 8.09016 8.43224 8.64251 9.03227 9.37694 9.85334 10.64117 Molecular weight = 322.12amu Principal moments of inertia in cm(-1) A = 0.042070 B = 0.001850 C = 0.001775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 665.393987 B =15134.139241 C =15766.845912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.351 6.351 3 C 0.513 3.487 4 O -0.496 6.496 5 C -0.052 4.052 6 C -0.161 4.161 7 C 0.133 3.867 8 N -0.449 5.449 9 C 0.387 3.613 10 N -0.669 5.669 11 C 0.694 3.306 12 O -0.533 6.533 13 N -0.719 5.719 14 C 0.129 3.871 15 C 0.428 3.572 16 O -0.598 6.598 17 N -0.548 5.548 18 C -0.306 4.306 19 H 0.106 0.894 20 C 0.026 3.974 21 N -0.893 5.893 22 Si 0.934 3.066 23 H -0.277 1.277 24 H -0.282 1.282 25 H -0.269 1.269 26 C -0.152 4.152 27 H 0.065 0.935 28 H 0.066 0.934 29 H 0.105 0.895 30 H 0.150 0.850 31 H 0.169 0.831 32 H 0.417 0.583 33 H 0.408 0.592 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.396 0.604 37 H 0.274 0.726 38 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.319 -16.283 1.721 27.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.267 6.267 3 C 0.356 3.644 4 O -0.384 6.384 5 C -0.061 4.061 6 C -0.183 4.183 7 C -0.026 4.026 8 N -0.164 5.164 9 C 0.154 3.846 10 N -0.317 5.317 11 C 0.393 3.607 12 O -0.405 6.405 13 N -0.377 5.377 14 C 0.001 3.999 15 C 0.213 3.787 16 O -0.485 6.485 17 N -0.182 5.182 18 C -0.435 4.435 19 H 0.123 0.877 20 C -0.177 4.177 21 N -0.533 5.533 22 Si 0.760 3.240 23 H -0.203 1.203 24 H -0.208 1.208 25 H -0.193 1.193 26 C -0.176 4.176 27 H 0.084 0.916 28 H 0.084 0.916 29 H 0.124 0.876 30 H 0.167 0.833 31 H 0.186 0.814 32 H 0.254 0.746 33 H 0.245 0.755 34 H 0.103 0.897 35 H 0.103 0.897 36 H 0.230 0.770 37 H 0.084 0.916 38 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -21.231 -16.163 1.680 26.737 hybrid contribution -0.831 1.270 -0.031 1.518 sum -22.062 -14.894 1.649 26.670 Atomic orbital electron populations 1.23352 0.75398 1.04103 1.02892 1.86530 1.23941 1.32158 1.84054 1.21066 0.88718 0.81676 0.72893 1.90856 1.66592 1.36047 1.44858 1.19035 0.89411 0.94253 1.03414 1.22354 0.95192 0.98881 1.01831 1.22800 0.91686 0.95010 0.93094 1.67628 1.39516 0.97149 1.12112 1.17963 0.86890 0.86109 0.93664 1.42726 1.06945 1.06755 1.75289 1.15882 0.80883 0.84810 0.79076 1.91038 1.64105 1.31409 1.53903 1.44807 1.07896 1.07350 1.77677 1.20831 0.79020 0.96848 1.03231 1.19723 0.83899 0.89375 0.85686 1.90495 1.52964 1.47366 1.57704 1.41780 1.05167 1.09275 1.62001 1.19732 0.92118 0.83879 1.47816 0.87659 1.25328 0.95567 1.00023 0.96759 1.69611 1.02629 1.32160 1.48945 0.85806 0.78184 0.81588 0.78403 1.20266 1.20792 1.19335 1.21467 0.92862 0.98795 1.04507 0.91588 0.91574 0.87642 0.83264 0.81381 0.74618 0.75489 0.89740 0.89742 0.76975 0.91560 0.83153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.18 10.56 101.05 1.07 1.24 16 2 O -0.35 -2.72 9.92 -40.41 -0.40 -3.12 16 3 C 0.51 4.97 7.92 34.76 0.28 5.25 16 4 O -0.50 -5.90 16.23 -19.21 -0.31 -6.22 16 5 C -0.05 -0.49 5.90 -104.69 -0.62 -1.11 16 6 C -0.16 -1.30 9.70 -39.01 -0.38 -1.68 16 7 C 0.13 1.29 11.16 -17.62 -0.20 1.10 16 8 N -0.45 -6.17 7.85 -12.42 -0.10 -6.27 16 9 C 0.39 4.79 7.42 -154.78 -1.15 3.64 16 10 N -0.67 -8.19 5.39 -15.83 -0.09 -8.28 16 11 C 0.69 11.12 8.52 -86.92 -0.74 10.38 16 12 O -0.53 -10.29 14.60 5.30 0.08 -10.21 16 13 N -0.72 -11.63 5.53 -66.42 -0.37 -12.00 16 14 C 0.13 2.33 6.15 -5.20 -0.03 2.30 16 15 C 0.43 9.62 7.85 -10.99 -0.09 9.54 16 16 O -0.60 -15.00 15.24 5.54 0.08 -14.92 16 17 N -0.55 -13.40 5.29 -10.96 -0.06 -13.46 16 18 C -0.31 -8.24 9.68 -14.93 -0.14 -8.39 16 19 H 0.11 2.95 7.16 -52.49 -0.38 2.57 16 20 C 0.03 0.68 5.50 -17.47 -0.10 0.59 16 21 N -0.89 -23.67 13.05 55.50 0.72 -22.95 16 22 Si 0.93 20.40 29.55 -169.99 -5.02 15.38 16 23 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 24 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 25 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 26 C -0.15 -1.53 9.51 -38.78 -0.37 -1.90 16 27 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.11 0.22 8.14 -51.93 -0.42 -0.20 16 30 H 0.15 0.82 7.71 -52.48 -0.40 0.41 16 31 H 0.17 1.17 8.06 -52.49 -0.42 0.75 16 32 H 0.42 3.64 8.72 -40.82 -0.36 3.29 16 33 H 0.41 6.28 7.46 -40.82 -0.30 5.98 16 34 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 35 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 36 H 0.40 9.33 7.90 -40.82 -0.32 9.01 16 37 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 38 H 0.15 1.29 7.74 -52.49 -0.41 0.88 16 LS Contribution 347.61 15.07 5.24 5.24 Total: -1.00 -34.91 347.61 -6.53 -41.44 By element: Atomic # 1 Polarization: 18.26 SS G_CDS: -3.84 Total: 14.42 kcal Atomic # 6 Polarization: 23.42 SS G_CDS: -2.47 Total: 20.95 kcal Atomic # 7 Polarization: -63.07 SS G_CDS: 0.12 Total: -62.96 kcal Atomic # 8 Polarization: -33.92 SS G_CDS: -0.55 Total: -34.47 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.02 Total: 15.38 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -34.91 -6.53 -41.44 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000350692881.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.166 kcal (2) G-P(sol) polarization free energy of solvation -34.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds