Wall clock time and date at job start Fri Apr 10 2020 18:25:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38138 * 120.03106 * 2 1 4 4 C 1.38263 * 120.06644 * 179.97438 * 3 2 1 5 5 N 1.48020 * 119.92796 * 180.02562 * 4 3 2 6 6 O 1.21798 * 120.00165 * 0.02562 * 5 4 3 7 7 O 1.21800 * 120.00150 * 179.97438 * 5 4 3 8 8 C 1.38298 * 120.13960 * 0.02562 * 4 3 2 9 9 C 1.38094 * 120.07206 * 0.02562 * 8 4 3 10 10 C 1.38844 * 120.03747 * 179.97438 * 2 1 3 11 11 N 1.39949 * 120.06785 * 359.74362 * 10 2 1 12 12 C 1.34776 * 119.99683 * 145.54030 * 11 10 2 13 13 O 1.21588 * 120.00393 * 4.51219 * 12 11 10 14 14 N 1.34776 * 120.00162 * 184.50419 * 12 11 10 15 15 C 1.46495 * 120.00569 * 180.02562 * 14 12 11 16 16 C 1.50691 * 109.47413 * 180.02562 * 15 14 12 17 17 O 1.21293 * 120.00025 * 0.02562 * 16 15 14 18 18 N 1.34779 * 120.00080 * 180.02562 * 16 15 14 19 19 C 1.37099 * 120.00120 * 180.02562 * 18 16 15 20 20 H 1.08000 * 120.00225 * 359.97438 * 19 18 16 21 21 C 1.38947 * 120.00272 * 179.97438 * 19 18 16 22 22 N 1.31412 * 119.99880 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 120.00314 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47425 * 89.99939 * 23 21 19 25 25 H 1.48505 * 109.47201 * 210.00294 * 23 21 19 26 26 H 1.48495 * 109.47003 * 329.99567 * 23 21 19 27 27 H 1.08997 * 109.46829 * 270.02206 * 1 2 3 28 28 H 1.08996 * 109.47285 * 30.02245 * 1 2 3 29 29 H 1.09007 * 109.46883 * 150.01880 * 1 2 3 30 30 H 1.07996 * 119.96885 * 359.95121 * 3 2 1 31 31 H 1.08006 * 119.96372 * 180.02562 * 8 4 3 32 32 H 1.08000 * 120.03335 * 180.02562 * 9 8 4 33 33 H 0.96996 * 120.00422 * 325.54660 * 11 10 2 34 34 H 0.97005 * 119.99835 * 0.02562 * 14 12 11 35 35 H 1.09005 * 109.47216 * 300.00174 * 15 14 12 36 36 H 1.09003 * 109.46978 * 59.99777 * 15 14 12 37 37 H 0.97002 * 120.00413 * 359.97438 * 18 16 15 38 38 H 0.97006 * 120.00109 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1959 0.0000 4 6 3.5810 1.1968 0.0005 5 7 4.3187 2.4801 0.0011 6 8 3.7078 3.5337 0.0016 7 8 5.5367 2.4824 0.0021 8 6 4.2761 0.0012 0.0005 9 6 3.5908 -1.1977 -0.0005 10 6 2.2020 -1.2020 0.0005 11 7 1.5045 -2.4152 0.0065 12 6 2.0005 -3.4808 -0.6530 13 8 3.0922 -3.4131 -1.1840 14 7 1.2864 -4.6217 -0.7238 15 6 1.8257 -5.7802 -1.4402 16 6 0.8391 -6.9172 -1.3714 17 8 -0.2114 -6.7738 -0.7824 18 7 1.1241 -8.0935 -1.9645 19 6 0.2263 -9.1278 -1.9023 20 1 -0.7091 -9.0001 -1.3779 21 6 0.5198 -10.3403 -2.5142 22 7 1.6578 -10.4955 -3.1528 23 14 -0.7037 -11.7492 -2.4301 24 1 -1.6284 -11.6717 -3.5895 25 1 0.0266 -13.0418 -2.4650 26 1 -1.4820 -11.6544 -1.1690 27 1 -0.3633 0.0004 1.0277 28 1 -0.3633 0.8897 -0.5142 29 1 -0.3633 -0.8902 -0.5136 30 1 1.6584 2.1312 -0.0008 31 1 5.3562 0.0052 0.0014 32 1 4.1343 -2.1310 -0.0001 33 1 0.6642 -2.4893 0.4852 34 1 0.4153 -4.6757 -0.3004 35 1 2.0004 -5.5138 -2.4827 36 1 2.7658 -6.0860 -0.9810 37 1 1.9641 -8.2081 -2.4359 38 1 1.8629 -11.3421 -3.5796 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000351144422.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:46 Heat of formation + Delta-G solvation = -41.983511 kcal Electronic energy + Delta-G solvation = -25509.074717 eV Core-core repulsion = 21355.079055 eV Total energy + Delta-G solvation = -4153.995662 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.116 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.34430 -41.17902 -39.42892 -38.33393 -36.71348 -35.44663 -34.75977 -33.93998 -33.31887 -31.54125 -31.07804 -28.04332 -27.70921 -26.16377 -24.61334 -23.36097 -22.03662 -21.15327 -19.84564 -19.18715 -19.06578 -18.57658 -18.37581 -17.88899 -17.67341 -16.26028 -15.92839 -15.52637 -15.39433 -14.93151 -14.78309 -14.51258 -14.26242 -14.14306 -13.87735 -13.75189 -13.61608 -12.82059 -12.65919 -12.38725 -12.25267 -12.04316 -11.73683 -11.72279 -11.36554 -11.30019 -11.22405 -11.04182 -10.55145 -10.47107 -10.38673 -9.75559 -9.52804 -9.26079 -8.80582 -8.77509 -8.22843 -6.62823 -4.05462 -0.38111 0.61142 1.10313 1.24255 2.16460 2.69953 3.02906 3.08757 3.15087 3.19672 3.59462 3.81767 3.98981 4.04667 4.13180 4.36085 4.49948 4.69044 4.75787 4.85737 5.05378 5.06376 5.23273 5.27934 5.45470 5.54308 5.60472 5.68998 5.76408 5.79384 5.88173 6.10080 6.32817 6.34667 6.50443 7.35110 7.48659 7.66857 7.79066 8.21291 8.31605 8.92472 9.25540 9.72408 10.53659 Molecular weight = 322.12amu Principal moments of inertia in cm(-1) A = 0.037841 B = 0.001979 C = 0.001897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 739.757569 B =14144.963088 C =14757.180230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.119 4.119 3 C -0.035 4.035 4 C -0.068 4.068 5 N 0.035 4.965 6 O -0.170 6.170 7 O -0.167 6.167 8 C -0.038 4.038 9 C -0.120 4.120 10 C 0.231 3.769 11 N -0.684 5.684 12 C 0.704 3.296 13 O -0.573 6.573 14 N -0.711 5.711 15 C 0.126 3.874 16 C 0.425 3.575 17 O -0.599 6.599 18 N -0.545 5.545 19 C -0.307 4.307 20 H 0.106 0.894 21 C 0.027 3.973 22 N -0.892 5.892 23 Si 0.934 3.066 24 H -0.276 1.276 25 H -0.282 1.282 26 H -0.268 1.268 27 H 0.080 0.920 28 H 0.079 0.921 29 H 0.074 0.926 30 H 0.155 0.845 31 H 0.155 0.845 32 H 0.168 0.832 33 H 0.415 0.585 34 H 0.411 0.589 35 H 0.087 0.913 36 H 0.087 0.913 37 H 0.397 0.603 38 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.479 18.520 6.398 19.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.122 4.122 3 C -0.054 4.054 4 C -0.152 4.152 5 N 0.552 4.448 6 O -0.384 6.384 7 O -0.382 6.382 8 C -0.058 4.058 9 C -0.141 4.141 10 C 0.132 3.868 11 N -0.331 5.331 12 C 0.404 3.596 13 O -0.450 6.450 14 N -0.367 5.367 15 C -0.002 4.002 16 C 0.210 3.790 17 O -0.486 6.486 18 N -0.179 5.179 19 C -0.437 4.437 20 H 0.124 0.876 21 C -0.177 4.177 22 N -0.532 5.532 23 Si 0.761 3.239 24 H -0.202 1.202 25 H -0.207 1.207 26 H -0.193 1.193 27 H 0.098 0.902 28 H 0.098 0.902 29 H 0.093 0.907 30 H 0.173 0.827 31 H 0.173 0.827 32 H 0.185 0.815 33 H 0.252 0.748 34 H 0.249 0.751 35 H 0.105 0.895 36 H 0.105 0.895 37 H 0.230 0.770 38 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 0.451 17.705 6.146 18.747 hybrid contribution -0.598 -0.600 0.040 0.848 sum -0.147 17.106 6.186 18.190 Atomic orbital electron populations 1.20796 0.88975 1.04238 1.03284 1.19620 0.97270 0.90228 1.05126 1.20640 0.90863 0.99454 0.94480 1.21036 0.92472 0.83527 1.18164 1.43584 1.01193 1.02819 0.97161 1.94519 1.69882 1.20130 1.53910 1.94538 0.95608 1.94274 1.53737 1.20951 1.02036 0.89186 0.93624 1.21449 0.92594 0.99140 1.00934 1.17704 0.91302 0.84422 0.93346 1.42766 1.26916 1.08915 1.54497 1.15813 0.84294 0.80052 0.79470 1.90940 1.20087 1.82626 1.51335 1.44792 1.22996 1.10924 1.58008 1.20910 0.96987 0.84677 0.97650 1.19645 0.88766 0.84518 0.86067 1.90499 1.26942 1.82532 1.48654 1.41785 1.19782 1.10051 1.46288 1.19727 1.00788 0.90000 1.33152 0.87602 1.25353 0.97252 0.99067 0.95984 1.69609 1.22534 1.26936 1.34074 0.85793 0.79633 0.79471 0.79029 1.20191 1.20717 1.19283 0.90188 0.90208 0.90712 0.82742 0.82695 0.81508 0.74794 0.75110 0.89542 0.89505 0.76960 0.91441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.59 9.47 36.01 0.34 -0.25 16 2 C -0.12 -0.92 5.90 -104.43 -0.62 -1.53 16 3 C -0.03 -0.29 9.20 -39.61 -0.36 -0.66 16 4 C -0.07 -0.70 6.85 -79.91 -0.55 -1.25 16 5 N 0.04 0.43 4.45 33.98 0.15 0.59 16 6 O -0.17 -2.17 18.44 -29.46 -0.54 -2.71 16 7 O -0.17 -2.20 18.44 -29.46 -0.54 -2.74 16 8 C -0.04 -0.37 9.55 -39.61 -0.38 -0.75 16 9 C -0.12 -1.24 8.70 -39.40 -0.34 -1.58 16 10 C 0.23 2.18 6.29 -83.69 -0.53 1.66 16 11 N -0.68 -6.30 4.76 -14.23 -0.07 -6.37 16 12 C 0.70 9.11 8.41 -86.92 -0.73 8.38 16 13 O -0.57 -9.02 13.75 5.29 0.07 -8.95 16 14 N -0.71 -9.79 5.53 -66.42 -0.37 -10.16 16 15 C 0.13 2.02 6.15 -5.20 -0.03 1.99 16 16 C 0.42 8.90 7.85 -10.99 -0.09 8.81 16 17 O -0.60 -14.12 15.24 5.55 0.08 -14.04 16 18 N -0.54 -12.65 5.29 -10.97 -0.06 -12.71 16 19 C -0.31 -7.94 9.68 -14.93 -0.14 -8.09 16 20 H 0.11 2.85 7.16 -52.49 -0.38 2.48 16 21 C 0.03 0.67 5.50 -17.47 -0.10 0.58 16 22 N -0.89 -22.86 13.05 55.50 0.72 -22.13 16 23 Si 0.93 19.70 29.55 -169.99 -5.02 14.68 16 24 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 25 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 26 H -0.27 -5.64 7.11 56.52 0.40 -5.23 16 27 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 28 H 0.08 0.34 8.09 -51.93 -0.42 -0.08 16 29 H 0.07 0.38 7.18 -51.93 -0.37 0.01 16 30 H 0.15 1.05 7.60 -52.49 -0.40 0.65 16 31 H 0.16 1.33 7.60 -52.48 -0.40 0.93 16 32 H 0.17 1.90 6.18 -52.49 -0.32 1.58 16 33 H 0.41 2.63 7.87 -40.82 -0.32 2.31 16 34 H 0.41 5.41 7.46 -40.82 -0.30 5.11 16 35 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 36 H 0.09 1.33 8.14 -51.93 -0.42 0.90 16 37 H 0.40 8.85 7.90 -40.82 -0.32 8.52 16 38 H 0.28 6.68 8.31 -40.82 -0.34 6.34 16 LS Contribution 343.16 15.07 5.17 5.17 Total: -1.00 -31.01 343.16 -7.56 -38.58 By element: Atomic # 1 Polarization: 17.13 SS G_CDS: -3.64 Total: 13.48 kcal Atomic # 6 Polarization: 10.84 SS G_CDS: -3.52 Total: 7.32 kcal Atomic # 7 Polarization: -51.17 SS G_CDS: 0.38 Total: -50.79 kcal Atomic # 8 Polarization: -27.51 SS G_CDS: -0.93 Total: -28.44 kcal Atomic # 14 Polarization: 19.70 SS G_CDS: -5.02 Total: 14.68 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -31.01 -7.56 -38.58 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351144422.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.405 kcal (2) G-P(sol) polarization free energy of solvation -31.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.579 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds