Wall clock time and date at job start Fri Apr 10 2020 18:25:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38138 * 120.03106 * 2 1 4 4 C 1.38263 * 120.06644 * 179.97438 * 3 2 1 5 5 N 1.48020 * 119.92796 * 180.02562 * 4 3 2 6 6 O 1.21798 * 120.00165 * 0.02562 * 5 4 3 7 7 O 1.21800 * 120.00150 * 179.97438 * 5 4 3 8 8 C 1.38298 * 120.13960 * 0.02562 * 4 3 2 9 9 C 1.38094 * 120.07206 * 0.02562 * 8 4 3 10 10 C 1.38844 * 120.03747 * 179.97438 * 2 1 3 11 11 N 1.39949 * 120.06785 * 359.74362 * 10 2 1 12 12 C 1.34776 * 119.99683 * 145.54030 * 11 10 2 13 13 O 1.21588 * 120.00393 * 4.51219 * 12 11 10 14 14 N 1.34776 * 120.00162 * 184.50419 * 12 11 10 15 15 C 1.46495 * 120.00569 * 180.02562 * 14 12 11 16 16 C 1.50691 * 109.47413 * 180.02562 * 15 14 12 17 17 O 1.21293 * 120.00025 * 0.02562 * 16 15 14 18 18 N 1.34779 * 120.00080 * 180.02562 * 16 15 14 19 19 C 1.37099 * 120.00120 * 180.02562 * 18 16 15 20 20 H 1.08000 * 120.00225 * 359.97438 * 19 18 16 21 21 C 1.38947 * 120.00272 * 179.97438 * 19 18 16 22 22 N 1.31412 * 119.99880 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 120.00314 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47425 * 89.99939 * 23 21 19 25 25 H 1.48505 * 109.47201 * 210.00294 * 23 21 19 26 26 H 1.48495 * 109.47003 * 329.99567 * 23 21 19 27 27 H 1.08997 * 109.46829 * 270.02206 * 1 2 3 28 28 H 1.08996 * 109.47285 * 30.02245 * 1 2 3 29 29 H 1.09007 * 109.46883 * 150.01880 * 1 2 3 30 30 H 1.07996 * 119.96885 * 359.95121 * 3 2 1 31 31 H 1.08006 * 119.96372 * 180.02562 * 8 4 3 32 32 H 1.08000 * 120.03335 * 180.02562 * 9 8 4 33 33 H 0.96996 * 120.00422 * 325.54660 * 11 10 2 34 34 H 0.97005 * 119.99835 * 0.02562 * 14 12 11 35 35 H 1.09005 * 109.47216 * 300.00174 * 15 14 12 36 36 H 1.09003 * 109.46978 * 59.99777 * 15 14 12 37 37 H 0.97002 * 120.00413 * 359.97438 * 18 16 15 38 38 H 0.97006 * 120.00109 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1959 0.0000 4 6 3.5810 1.1968 0.0005 5 7 4.3187 2.4801 0.0011 6 8 3.7078 3.5337 0.0016 7 8 5.5367 2.4824 0.0021 8 6 4.2761 0.0012 0.0005 9 6 3.5908 -1.1977 -0.0005 10 6 2.2020 -1.2020 0.0005 11 7 1.5045 -2.4152 0.0065 12 6 2.0005 -3.4808 -0.6530 13 8 3.0922 -3.4131 -1.1840 14 7 1.2864 -4.6217 -0.7238 15 6 1.8257 -5.7802 -1.4402 16 6 0.8391 -6.9172 -1.3714 17 8 -0.2114 -6.7738 -0.7824 18 7 1.1241 -8.0935 -1.9645 19 6 0.2263 -9.1278 -1.9023 20 1 -0.7091 -9.0001 -1.3779 21 6 0.5198 -10.3403 -2.5142 22 7 1.6578 -10.4955 -3.1528 23 14 -0.7037 -11.7492 -2.4301 24 1 -1.6284 -11.6717 -3.5895 25 1 0.0266 -13.0418 -2.4650 26 1 -1.4820 -11.6544 -1.1690 27 1 -0.3633 0.0004 1.0277 28 1 -0.3633 0.8897 -0.5142 29 1 -0.3633 -0.8902 -0.5136 30 1 1.6584 2.1312 -0.0008 31 1 5.3562 0.0052 0.0014 32 1 4.1343 -2.1310 -0.0001 33 1 0.6642 -2.4893 0.4852 34 1 0.4153 -4.6757 -0.3004 35 1 2.0004 -5.5138 -2.4827 36 1 2.7658 -6.0860 -0.9810 37 1 1.9641 -8.2081 -2.4359 38 1 1.8629 -11.3421 -3.5796 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000351144422.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:45 Heat of formation + Delta-G solvation = -62.871121 kcal Electronic energy + Delta-G solvation = -25509.980472 eV Core-core repulsion = 21355.079055 eV Total energy + Delta-G solvation = -4154.901417 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.116 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.25207 -42.10625 -40.55686 -39.81359 -37.66643 -36.41973 -36.21727 -35.46611 -33.98295 -33.38425 -31.97246 -29.35749 -28.31481 -27.23976 -26.23529 -24.21259 -22.83965 -22.14114 -21.41953 -20.25234 -20.01888 -19.92807 -19.49864 -18.99896 -18.59393 -17.49404 -17.21766 -16.74340 -16.54835 -16.35974 -15.90418 -15.76825 -15.51640 -15.13547 -14.90837 -14.67274 -14.36596 -14.00466 -13.72773 -13.54781 -13.34351 -13.12457 -12.91973 -12.79933 -12.65793 -12.45871 -12.30189 -12.29357 -12.13511 -11.92621 -11.57272 -11.48702 -10.57517 -10.40901 -10.21358 -10.09983 -9.60520 -8.51753 -6.01708 -1.26181 -0.08438 0.21957 0.38566 1.19335 1.36136 1.43888 1.55688 1.73553 1.90903 2.26709 2.27936 2.82728 3.14929 3.15998 3.32842 3.45062 3.65755 3.77591 4.07723 4.17817 4.22153 4.42114 4.42879 4.58812 4.62046 4.73628 4.77499 4.90325 5.03667 5.15061 5.17528 5.22420 5.38194 5.52950 5.64185 5.91252 6.46688 6.50525 6.69816 7.03153 7.18220 7.44045 7.93357 8.64817 Molecular weight = 322.12amu Principal moments of inertia in cm(-1) A = 0.037841 B = 0.001979 C = 0.001897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 739.757569 B =14144.963088 C =14757.180230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.102 4.102 3 C -0.030 4.030 4 C -0.078 4.078 5 N 0.036 4.964 6 O -0.172 6.172 7 O -0.197 6.197 8 C -0.040 4.040 9 C -0.129 4.129 10 C 0.222 3.778 11 N -0.666 5.666 12 C 0.708 3.292 13 O -0.601 6.601 14 N -0.710 5.710 15 C 0.140 3.860 16 C 0.433 3.567 17 O -0.624 6.624 18 N -0.559 5.559 19 C -0.335 4.335 20 H 0.088 0.912 21 C -0.011 4.011 22 N -0.915 5.915 23 Si 0.995 3.005 24 H -0.271 1.271 25 H -0.274 1.274 26 H -0.269 1.269 27 H 0.101 0.899 28 H 0.093 0.907 29 H 0.076 0.924 30 H 0.175 0.825 31 H 0.160 0.840 32 H 0.154 0.846 33 H 0.431 0.569 34 H 0.415 0.585 35 H 0.097 0.903 36 H 0.099 0.901 37 H 0.399 0.601 38 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.918 19.171 6.736 20.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.106 4.106 3 C -0.049 4.049 4 C -0.163 4.163 5 N 0.550 4.450 6 O -0.388 6.388 7 O -0.405 6.405 8 C -0.060 4.060 9 C -0.151 4.151 10 C 0.123 3.877 11 N -0.314 5.314 12 C 0.408 3.592 13 O -0.480 6.480 14 N -0.367 5.367 15 C 0.012 3.988 16 C 0.220 3.780 17 O -0.512 6.512 18 N -0.194 5.194 19 C -0.465 4.465 20 H 0.106 0.894 21 C -0.212 4.212 22 N -0.555 5.555 23 Si 0.819 3.181 24 H -0.197 1.197 25 H -0.199 1.199 26 H -0.194 1.194 27 H 0.119 0.881 28 H 0.112 0.888 29 H 0.095 0.905 30 H 0.193 0.807 31 H 0.177 0.823 32 H 0.172 0.828 33 H 0.271 0.729 34 H 0.254 0.746 35 H 0.115 0.885 36 H 0.117 0.883 37 H 0.233 0.767 38 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -0.916 18.392 6.507 19.531 hybrid contribution -0.218 -0.697 -0.021 0.730 sum -1.133 17.695 6.486 18.880 Atomic orbital electron populations 1.20935 0.86560 1.05056 1.04875 1.19857 0.98723 0.88966 1.03076 1.20929 0.90022 1.00599 0.93389 1.21197 0.93200 0.82537 1.19317 1.43840 1.01132 1.03360 0.96680 1.94493 1.69722 1.20906 1.53636 1.94536 0.96275 1.94536 1.55196 1.20973 1.02423 0.88997 0.93603 1.21354 0.93222 0.98674 1.01804 1.17855 0.91133 0.84932 0.93760 1.42490 1.27273 1.07891 1.53771 1.15806 0.83744 0.80290 0.79361 1.90937 1.21305 1.83139 1.52591 1.44646 1.23242 1.10678 1.58140 1.20680 0.95713 0.83613 0.98835 1.20395 0.88882 0.84802 0.83939 1.90480 1.28382 1.83153 1.49162 1.41839 1.19746 1.10502 1.47359 1.19718 1.00996 0.91500 1.34260 0.89445 1.26109 0.98852 1.00860 0.95359 1.69674 1.23653 1.27645 1.34550 0.84885 0.77607 0.76746 0.78883 1.19651 1.19877 1.19385 0.88088 0.88799 0.90534 0.80731 0.82276 0.82801 0.72894 0.74611 0.88487 0.88297 0.76654 0.91108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.75 9.47 71.24 0.67 -0.07 16 2 C -0.10 -1.29 5.90 -19.74 -0.12 -1.41 16 3 C -0.03 -0.43 9.20 22.25 0.20 -0.22 16 4 C -0.08 -1.53 6.85 36.40 0.25 -1.28 16 5 N 0.04 0.88 4.45 -46.41 -0.21 0.67 16 6 O -0.17 -4.20 18.44 18.89 0.35 -3.86 16 7 O -0.20 -5.25 18.44 18.89 0.35 -4.90 16 8 C -0.04 -0.77 9.55 22.25 0.21 -0.56 16 9 C -0.13 -2.57 8.70 22.39 0.19 -2.38 16 10 C 0.22 3.76 6.29 38.14 0.24 4.00 16 11 N -0.67 -10.86 4.76 -317.18 -1.51 -12.37 16 12 C 0.71 17.21 8.41 179.06 1.51 18.72 16 13 O -0.60 -18.32 13.75 -3.99 -0.05 -18.37 16 14 N -0.71 -18.47 5.53 -482.31 -2.67 -21.14 16 15 C 0.14 4.34 6.15 85.63 0.53 4.87 16 16 C 0.43 18.00 7.85 87.65 0.69 18.68 16 17 O -0.62 -29.22 15.24 -3.07 -0.05 -29.27 16 18 N -0.56 -26.13 5.29 -306.99 -1.62 -27.75 16 19 C -0.34 -17.52 9.68 84.04 0.81 -16.71 16 20 H 0.09 4.80 7.16 -2.91 -0.02 4.78 16 21 C -0.01 -0.55 5.50 84.93 0.47 -0.08 16 22 N -0.92 -46.84 13.05 21.66 0.28 -46.56 16 23 Si 1.00 40.10 29.55 68.60 2.03 42.13 16 24 H -0.27 -10.64 7.11 99.48 0.71 -9.93 16 25 H -0.27 -10.60 7.11 99.48 0.71 -9.89 16 26 H -0.27 -10.78 7.11 99.48 0.71 -10.07 16 27 H 0.10 0.29 8.14 -2.39 -0.02 0.28 16 28 H 0.09 0.40 8.09 -2.39 -0.02 0.38 16 29 H 0.08 0.51 7.18 -2.38 -0.02 0.49 16 30 H 0.18 1.82 7.60 -2.91 -0.02 1.79 16 31 H 0.16 2.80 7.60 -2.91 -0.02 2.78 16 32 H 0.15 3.51 6.18 -2.91 -0.02 3.50 16 33 H 0.43 4.27 7.87 -92.71 -0.73 3.54 16 34 H 0.42 10.26 7.46 -92.70 -0.69 9.57 16 35 H 0.10 2.87 8.14 -2.38 -0.02 2.85 16 36 H 0.10 2.89 8.14 -2.39 -0.02 2.88 16 37 H 0.40 17.95 7.90 -92.71 -0.73 17.22 16 38 H 0.28 13.44 8.31 -92.70 -0.77 12.67 16 Total: -1.00 -66.61 343.16 1.58 -65.03 By element: Atomic # 1 Polarization: 33.80 SS G_CDS: -0.98 Total: 32.82 kcal Atomic # 6 Polarization: 17.90 SS G_CDS: 5.66 Total: 23.56 kcal Atomic # 7 Polarization: -101.42 SS G_CDS: -5.72 Total: -107.15 kcal Atomic # 8 Polarization: -56.99 SS G_CDS: 0.59 Total: -56.39 kcal Atomic # 14 Polarization: 40.10 SS G_CDS: 2.03 Total: 42.13 kcal Total: -66.61 1.58 -65.03 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351144422.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.157 kcal (2) G-P(sol) polarization free energy of solvation -66.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds