Wall clock time and date at job start Fri Apr 10 2020 18:25:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 119.99742 * 2 1 4 4 H 1.48501 * 109.47176 * 270.00070 * 3 2 1 5 5 H 1.48498 * 109.47301 * 30.00577 * 3 2 1 6 6 H 1.48506 * 109.46930 * 150.00340 * 3 2 1 7 7 C 1.37880 * 120.00443 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99295 * 359.97438 * 7 2 1 9 9 C 1.50692 * 120.00350 * 179.97438 * 7 2 1 10 10 C 1.52995 * 109.47334 * 179.97438 * 9 7 2 11 11 C 1.53004 * 109.47266 * 179.97438 * 10 9 7 12 12 S 1.81400 * 109.47074 * 179.97438 * 11 10 9 13 13 O 1.42099 * 110.54023 * 68.37762 * 12 11 10 14 14 O 1.42101 * 110.54461 * 291.62679 * 12 11 10 15 15 N 1.65599 * 104.44724 * 179.97438 * 12 11 10 16 16 C 1.46505 * 119.99922 * 65.00573 * 15 12 11 17 17 C 1.53001 * 109.47037 * 164.99528 * 16 15 12 18 18 N 1.46899 * 109.46645 * 179.97438 * 17 16 15 19 19 C 1.46466 * 111.00008 * 295.97805 * 18 17 16 20 20 C 1.53257 * 109.85942 * 162.23634 * 19 18 17 21 21 S 1.81896 * 108.50319 * 62.00524 * 20 19 18 22 22 C 1.81900 * 101.91729 * 308.69742 * 21 20 19 23 23 C 1.46476 * 110.99642 * 170.00420 * 18 17 16 24 24 H 0.96993 * 120.00085 * 359.97438 * 1 2 3 25 25 H 1.09004 * 109.46866 * 59.99579 * 9 7 2 26 26 H 1.09000 * 109.47297 * 300.00243 * 9 7 2 27 27 H 1.09004 * 109.47174 * 60.00152 * 10 9 7 28 28 H 1.09000 * 109.47441 * 300.00539 * 10 9 7 29 29 H 1.08998 * 109.46810 * 60.00440 * 11 10 9 30 30 H 1.08995 * 109.47251 * 300.00153 * 11 10 9 31 31 H 0.97005 * 120.00078 * 244.99582 * 15 12 11 32 32 H 1.09003 * 109.46850 * 44.99612 * 16 15 12 33 33 H 1.08992 * 109.46816 * 284.99734 * 16 15 12 34 34 H 1.09001 * 109.46715 * 60.00353 * 17 16 15 35 35 H 1.09001 * 109.47246 * 299.99822 * 17 16 15 36 36 H 1.08996 * 109.41064 * 282.35718 * 19 18 17 37 37 H 1.09003 * 109.40451 * 42.12084 * 19 18 17 38 38 H 1.09000 * 109.62812 * 302.30722 * 20 19 18 39 39 H 1.08992 * 109.79327 * 181.80970 * 20 19 18 40 40 H 1.09006 * 109.63072 * 291.60294 * 22 21 20 41 41 H 1.08997 * 109.79606 * 171.10985 * 22 21 20 42 42 H 1.09003 * 109.40150 * 317.88083 * 23 18 17 43 43 H 1.09001 * 109.40888 * 77.72481 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 6 4.0216 -2.6364 -0.0010 11 6 5.5516 -2.6364 -0.0022 12 16 6.1563 -4.3466 -0.0013 13 8 5.8593 -4.9812 -1.2376 14 8 5.8612 -4.9793 1.2364 15 7 7.8060 -4.2016 -0.0035 16 6 8.4901 -3.6023 1.1451 17 6 9.9852 -3.9188 1.0702 18 7 10.6711 -3.3173 2.2215 19 6 10.5797 -1.8561 2.1824 20 6 10.8932 -1.2775 3.5664 21 16 12.6004 -1.7256 4.0062 22 6 12.6028 -3.5219 3.7202 23 6 12.0539 -3.7914 2.3150 24 1 -0.4850 0.8400 0.0004 25 1 3.8752 -0.6803 0.8888 26 1 3.8746 -0.6799 -0.8911 27 1 3.6580 -3.1505 -0.8908 28 1 3.6586 -3.1502 0.8892 29 1 5.9156 -2.1223 0.8873 30 1 5.9143 -2.1229 -0.8926 31 1 8.3193 -4.5136 -0.7652 32 1 8.0778 -4.0113 2.0675 33 1 8.3463 -2.5220 1.1304 34 1 10.3974 -3.5098 0.1478 35 1 10.1290 -4.9992 1.0849 36 1 11.2946 -1.4677 1.4571 37 1 9.5717 -1.5641 1.8876 38 1 10.2045 -1.6935 4.3018 39 1 10.7936 -0.1924 3.5441 40 1 11.9701 -4.0115 4.4606 41 1 13.6199 -3.9064 3.7961 42 1 12.0839 -4.8623 2.1137 43 1 12.6668 -3.2676 1.5814 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000352468954.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:53 Heat of formation + Delta-G solvation = -104.915399 kcal Electronic energy + Delta-G solvation = -22954.431036 eV Core-core repulsion = 19479.443608 eV Total energy + Delta-G solvation = -3474.987428 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 322.117 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.57606 -38.18639 -37.06067 -36.49693 -36.27396 -34.24379 -32.56940 -31.84413 -30.14984 -27.93030 -25.39668 -24.73808 -23.40337 -22.26379 -21.81347 -20.38384 -18.98236 -18.64835 -17.98259 -17.49024 -17.25945 -16.68504 -16.30675 -16.19297 -16.07037 -15.83277 -15.42499 -15.06885 -14.86183 -14.72127 -14.25858 -14.06128 -13.67406 -13.60980 -13.55668 -13.23397 -13.20299 -13.15136 -13.01285 -12.70657 -12.68592 -12.54625 -12.49410 -12.35281 -11.83996 -11.68826 -11.63442 -11.40664 -11.27300 -10.77274 -10.70586 -10.30995 -9.46221 -8.70956 -8.29551 -6.35618 -0.74110 0.83972 1.37140 1.39936 1.51390 1.58719 1.75037 2.36728 2.71734 2.80725 3.05711 3.25655 3.68449 3.75489 3.83983 3.93463 3.96428 4.04152 4.22209 4.24099 4.34395 4.35589 4.40800 4.50486 4.55525 4.64021 4.72299 4.80460 4.85725 4.86353 4.91197 4.96672 5.02167 5.04683 5.35217 5.46933 5.63190 5.90470 5.98288 6.12238 6.25648 6.73019 7.29095 8.87509 Molecular weight = 322.12amu Principal moments of inertia in cm(-1) A = 0.013495 B = 0.002797 C = 0.002392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2074.358754 B =10008.278337 C =11705.188825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C -0.001 4.001 3 Si 0.956 3.044 4 H -0.265 1.265 5 H -0.287 1.287 6 H -0.236 1.236 7 C -0.544 4.544 8 H 0.029 0.971 9 C -0.005 4.005 10 C -0.105 4.105 11 C -0.609 4.609 12 S 2.628 3.372 13 O -0.994 6.994 14 O -0.993 6.993 15 N -1.107 6.107 16 C 0.106 3.894 17 C 0.060 3.940 18 N -0.561 5.561 19 C 0.047 3.953 20 C -0.068 4.068 21 S -0.323 6.323 22 C -0.065 4.065 23 C 0.059 3.941 24 H 0.267 0.733 25 H 0.033 0.967 26 H 0.031 0.969 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.155 0.845 30 H 0.157 0.843 31 H 0.427 0.573 32 H 0.078 0.922 33 H 0.086 0.914 34 H 0.060 0.940 35 H 0.091 0.909 36 H 0.052 0.948 37 H 0.104 0.896 38 H 0.089 0.911 39 H 0.117 0.883 40 H 0.089 0.911 41 H 0.121 0.879 42 H 0.102 0.898 43 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 31.415 -4.626 3.687 31.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.197 4.197 3 Si 0.778 3.222 4 H -0.190 1.190 5 H -0.213 1.213 6 H -0.159 1.159 7 C -0.582 4.582 8 H 0.047 0.953 9 C -0.044 4.044 10 C -0.144 4.144 11 C -0.740 4.740 12 S 2.723 3.277 13 O -0.985 6.985 14 O -0.983 6.983 15 N -0.869 5.869 16 C -0.021 4.021 17 C -0.069 4.069 18 N -0.286 5.286 19 C -0.082 4.082 20 C -0.216 4.216 21 S -0.097 6.097 22 C -0.214 4.214 23 C -0.070 4.070 24 H 0.075 0.925 25 H 0.052 0.948 26 H 0.050 0.950 27 H 0.080 0.920 28 H 0.081 0.919 29 H 0.173 0.827 30 H 0.176 0.824 31 H 0.263 0.737 32 H 0.096 0.904 33 H 0.104 0.896 34 H 0.078 0.922 35 H 0.109 0.891 36 H 0.071 0.929 37 H 0.122 0.878 38 H 0.108 0.892 39 H 0.135 0.865 40 H 0.107 0.893 41 H 0.139 0.861 42 H 0.120 0.880 43 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 31.327 -4.800 4.641 32.031 hybrid contribution -0.762 0.623 -1.263 1.601 sum 30.565 -4.176 3.379 31.034 Atomic orbital electron populations 1.70086 1.08586 1.28314 1.52400 1.26138 0.95701 1.03976 0.93907 0.85580 0.79764 0.77483 0.79345 1.19014 1.21271 1.15887 1.21576 0.92486 0.93229 1.50948 0.95295 1.19505 0.93570 0.93518 0.97765 1.21183 0.90700 1.00418 1.02142 1.30498 1.05323 1.24198 1.14030 1.04231 0.73318 0.77454 0.72691 1.93544 1.83791 1.74615 1.46511 1.93543 1.84007 1.73780 1.46970 1.55191 1.24868 1.78371 1.28493 1.21520 0.93692 0.98756 0.88085 1.22143 0.91831 1.01005 0.91917 1.61014 1.16321 1.07997 1.43316 1.22403 1.03505 0.86933 0.95384 1.23538 0.93455 1.04642 0.99973 1.87165 1.20066 1.12278 1.90223 1.23537 1.05797 0.91937 1.00123 1.22237 0.87431 1.02131 0.95237 0.92458 0.94829 0.95043 0.91960 0.91912 0.82703 0.82449 0.73683 0.90365 0.89621 0.92201 0.89055 0.92944 0.87807 0.89212 0.86481 0.89267 0.86129 0.87993 0.93085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.96 13.96 21.45 0.30 -59.66 16 2 C 0.00 -0.04 5.47 84.66 0.46 0.42 16 3 Si 0.96 42.54 27.47 68.60 1.88 44.42 16 4 H -0.27 -11.26 7.11 99.48 0.71 -10.56 16 5 H -0.29 -12.68 7.11 99.48 0.71 -11.98 16 6 H -0.24 -9.28 6.54 99.48 0.65 -8.63 16 7 C -0.54 -31.22 9.66 25.60 0.25 -30.98 16 8 H 0.03 1.84 7.99 -2.91 -0.02 1.82 16 9 C -0.01 -0.22 4.04 29.84 0.12 -0.10 16 10 C -0.11 -3.87 5.16 30.59 0.16 -3.71 16 11 C -0.61 -14.51 6.07 71.98 0.44 -14.07 16 12 S 2.63 64.78 5.46 -56.49 -0.31 64.47 16 13 O -0.99 -31.44 18.08 -127.65 -2.31 -33.75 16 14 O -0.99 -31.86 17.50 -127.65 -2.23 -34.09 16 15 N -1.11 -16.26 5.89 -187.48 -1.10 -17.36 16 16 C 0.11 1.29 6.06 86.38 0.52 1.82 16 17 C 0.06 0.54 5.10 86.30 0.44 0.99 16 18 N -0.56 -5.90 4.41 -897.49 -3.96 -9.86 16 19 C 0.05 0.47 5.29 86.47 0.46 0.93 16 20 C -0.07 -0.81 6.69 72.07 0.48 -0.33 16 21 S -0.32 -4.86 22.40 -56.49 -1.27 -6.12 16 22 C -0.07 -0.68 6.69 72.07 0.48 -0.20 16 23 C 0.06 0.52 5.42 86.47 0.47 0.99 16 24 H 0.27 15.57 8.31 -92.71 -0.77 14.80 16 25 H 0.03 1.39 7.20 -2.39 -0.02 1.37 16 26 H 0.03 1.29 7.57 -2.39 -0.02 1.27 16 27 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 28 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 29 H 0.15 2.83 8.14 -2.39 -0.02 2.81 16 30 H 0.16 2.90 8.14 -2.39 -0.02 2.88 16 31 H 0.43 4.49 8.62 -96.74 -0.83 3.66 16 32 H 0.08 1.23 7.70 -2.39 -0.02 1.21 16 33 H 0.09 0.73 6.18 -2.39 -0.01 0.71 16 34 H 0.06 0.40 8.14 -2.39 -0.02 0.38 16 35 H 0.09 0.78 7.84 -2.39 -0.02 0.76 16 36 H 0.05 0.53 7.91 -2.39 -0.02 0.52 16 37 H 0.10 0.82 5.77 -2.39 -0.01 0.81 16 38 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 39 H 0.12 1.18 8.14 -2.39 -0.02 1.16 16 40 H 0.09 1.02 8.14 -2.38 -0.02 1.00 16 41 H 0.12 0.90 8.14 -2.39 -0.02 0.88 16 42 H 0.10 0.62 7.76 -2.39 -0.02 0.61 16 43 H 0.05 0.46 7.91 -2.39 -0.02 0.44 16 Total: -1.00 -79.81 365.59 -4.61 -84.42 By element: Atomic # 1 Polarization: 11.66 SS G_CDS: 0.11 Total: 11.77 kcal Atomic # 6 Polarization: -48.52 SS G_CDS: 4.28 Total: -44.24 kcal Atomic # 7 Polarization: -82.12 SS G_CDS: -4.76 Total: -86.88 kcal Atomic # 8 Polarization: -63.30 SS G_CDS: -4.54 Total: -67.84 kcal Atomic # 14 Polarization: 42.54 SS G_CDS: 1.88 Total: 44.42 kcal Atomic # 16 Polarization: 59.93 SS G_CDS: -1.57 Total: 58.35 kcal Total: -79.81 -4.61 -84.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352468954.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.497 kcal (2) G-P(sol) polarization free energy of solvation -79.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds