Wall clock time and date at job start Fri Apr 10 2020 18:26:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35652 * 116.99976 * 2 1 4 4 C 1.38710 * 120.15289 * 359.97176 * 3 2 1 5 5 C 1.38054 * 120.08690 * 180.02562 * 4 3 2 6 6 C 1.38551 * 120.38597 * 359.97350 * 5 4 3 7 7 N 1.48025 * 119.84513 * 180.02562 * 6 5 4 8 8 O 1.21796 * 120.00163 * 359.97438 * 7 6 5 9 9 O 1.21797 * 120.00140 * 180.02562 * 7 6 5 10 10 C 1.37780 * 120.30490 * 359.79039 * 6 5 4 11 11 C 1.39715 * 119.90752 * 0.46574 * 10 6 5 12 12 C 1.47532 * 120.19043 * 179.78861 * 11 10 6 13 13 O 1.21585 * 119.99516 * 155.28760 * 12 11 10 14 14 N 1.34770 * 120.00402 * 335.28288 * 12 11 10 15 15 C 1.47579 * 134.49752 * 174.67055 * 14 12 11 16 16 C 1.53942 * 86.11966 * 155.36232 * 15 14 12 17 17 O 1.42908 * 113.73880 * 269.15469 * 16 15 14 18 18 C 1.50701 * 113.74418 * 137.95527 * 16 15 14 19 19 H 1.08000 * 119.99516 * 1.92344 * 18 16 15 20 20 C 1.37868 * 120.00132 * 181.92412 * 18 16 15 21 21 N 1.31515 * 119.99957 * 359.97438 * 20 18 16 22 22 Si 1.86804 * 120.00210 * 180.02562 * 20 18 16 23 23 H 1.48493 * 109.47354 * 180.02562 * 22 20 18 24 24 H 1.48504 * 109.46848 * 299.99891 * 22 20 18 25 25 H 1.48497 * 109.46972 * 59.99440 * 22 20 18 26 26 C 1.47822 * 134.45328 * 354.54250 * 14 12 11 27 27 H 1.09002 * 109.47122 * 60.00235 * 1 2 3 28 28 H 1.09002 * 109.47538 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47347 * 300.00623 * 1 2 3 30 30 H 1.07998 * 119.95517 * 0.04962 * 4 3 2 31 31 H 1.07999 * 119.80420 * 180.02562 * 5 4 3 32 32 H 1.07999 * 120.05130 * 180.24959 * 10 6 5 33 33 H 1.09002 * 113.76717 * 41.05434 * 15 14 12 34 34 H 1.09002 * 113.86731 * 269.67749 * 15 14 12 35 35 H 0.96696 * 113.99729 * 178.07496 * 17 16 15 36 36 H 0.97003 * 119.99949 * 180.02562 * 21 20 18 37 37 H 1.08997 * 113.77054 * 90.37921 * 26 14 12 38 38 H 1.09004 * 113.83335 * 318.90797 * 26 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0448 1.2087 0.0000 4 6 1.2924 2.3740 -0.0006 5 6 1.9206 3.6034 -0.0011 6 6 3.3038 3.6836 -0.0005 7 7 3.9648 5.0080 -0.0005 8 8 3.2931 6.0240 -0.0015 9 8 5.1806 5.0819 -0.0005 10 6 4.0667 2.5363 0.0050 11 6 3.4441 1.2856 0.0001 12 6 4.2550 0.0531 0.0012 13 8 3.7882 -0.9812 0.4377 14 7 5.5131 0.0738 -0.4815 15 6 6.6127 -0.9084 -0.5453 16 6 7.1255 -0.0995 -1.7505 17 8 6.6191 -0.5554 -3.0067 18 6 8.6193 0.0993 -1.7566 19 1 9.2254 -0.3384 -0.9772 20 6 9.2122 0.8399 -2.7570 21 7 8.4741 1.3725 -3.7063 22 14 11.0639 1.0858 -2.7649 23 1 11.4484 1.9135 -3.9363 24 1 11.4771 1.7745 -1.5158 25 1 11.7382 -0.2346 -2.8484 26 6 6.3444 1.0893 -1.1619 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 0.2138 2.3195 -0.0002 31 1 1.3303 4.5078 -0.0012 32 1 5.1446 2.6037 0.0095 33 1 6.2867 -1.9170 -0.7996 34 1 7.2787 -0.8816 0.3172 35 1 6.9155 -0.0317 -3.7636 36 1 8.8912 1.8933 -4.4104 37 1 6.9304 1.7057 -0.4803 38 1 5.8044 1.6727 -1.9077 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356551655.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:08 Heat of formation + Delta-G solvation = -49.657052 kcal Electronic energy + Delta-G solvation = -27504.776665 eV Core-core repulsion = 23318.155502 eV Total energy + Delta-G solvation = -4186.621163 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.109 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.14285 -40.84161 -39.40471 -37.85808 -37.23461 -36.48406 -34.03823 -32.25396 -32.09105 -31.40551 -28.76752 -27.92946 -25.98269 -25.60529 -25.44989 -23.82965 -22.23844 -20.64033 -19.52776 -18.65835 -18.58870 -18.00822 -17.46680 -17.41499 -16.69811 -16.44373 -16.18633 -15.51326 -15.15955 -14.81405 -14.67359 -14.17409 -14.08922 -13.76773 -13.41153 -13.06666 -12.79482 -12.54115 -12.29156 -12.05295 -11.71271 -11.70429 -11.59220 -11.46632 -11.17311 -11.14019 -11.05860 -11.03439 -10.55466 -10.33565 -9.83364 -9.67306 -9.33107 -8.99955 -8.78706 -8.49572 -7.95106 -6.40586 -4.51504 -0.16001 0.43303 1.27233 1.40986 2.69266 2.74299 3.18153 3.21596 3.24563 3.28763 3.53861 4.05204 4.16199 4.19626 4.35825 4.53310 4.72731 4.77520 4.81575 4.90499 5.10809 5.17734 5.21071 5.43723 5.44310 5.54629 5.82397 5.89119 6.07492 6.28651 6.37348 6.39566 6.49406 6.58391 6.81539 7.02639 7.61430 7.70687 7.77753 8.28252 8.51655 8.55722 9.19882 9.37654 10.66416 Molecular weight = 322.11amu Principal moments of inertia in cm(-1) A = 0.012415 B = 0.004551 C = 0.003545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2254.871032 B = 6150.672330 C = 7896.754777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.269 6.269 3 C 0.228 3.772 4 C -0.221 4.221 5 C 0.003 3.997 6 C -0.094 4.094 7 N 0.037 4.963 8 O -0.172 6.172 9 O -0.154 6.154 10 C 0.017 3.983 11 C -0.151 4.151 12 C 0.575 3.425 13 O -0.537 6.537 14 N -0.627 5.627 15 C 0.116 3.884 16 C 0.242 3.758 17 O -0.572 6.572 18 C -0.540 4.540 19 H 0.072 0.928 20 C 0.075 3.925 21 N -0.897 5.897 22 Si 0.908 3.092 23 H -0.284 1.284 24 H -0.272 1.272 25 H -0.274 1.274 26 C 0.068 3.932 27 H 0.062 0.938 28 H 0.109 0.891 29 H 0.062 0.938 30 H 0.157 0.843 31 H 0.158 0.842 32 H 0.170 0.830 33 H 0.074 0.926 34 H 0.090 0.910 35 H 0.392 0.608 36 H 0.274 0.726 37 H 0.089 0.911 38 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.407 3.323 5.849 15.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.178 6.178 3 C 0.178 3.822 4 C -0.240 4.240 5 C -0.017 4.017 6 C -0.177 4.177 7 N 0.555 4.445 8 O -0.385 6.385 9 O -0.371 6.371 10 C -0.003 4.003 11 C -0.156 4.156 12 C 0.363 3.637 13 O -0.416 6.416 14 N -0.360 5.360 15 C -0.006 4.006 16 C 0.201 3.799 17 O -0.384 6.384 18 C -0.578 4.578 19 H 0.090 0.910 20 C -0.129 4.129 21 N -0.536 5.536 22 Si 0.735 3.265 23 H -0.210 1.210 24 H -0.197 1.197 25 H -0.199 1.199 26 C -0.054 4.054 27 H 0.081 0.919 28 H 0.128 0.872 29 H 0.081 0.919 30 H 0.174 0.826 31 H 0.176 0.824 32 H 0.187 0.813 33 H 0.092 0.908 34 H 0.108 0.892 35 H 0.247 0.753 36 H 0.085 0.915 37 H 0.107 0.893 38 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -15.378 1.588 6.341 16.710 hybrid contribution 1.040 1.341 -0.430 1.751 sum -14.339 2.929 5.910 15.783 Atomic orbital electron populations 1.23335 0.77675 1.05209 1.01689 1.86424 1.21703 1.24786 1.84882 1.19366 0.91056 0.85318 0.86464 1.21188 1.01233 0.90370 1.11203 1.20874 0.91432 0.99512 0.89862 1.20813 0.93264 0.83079 1.20589 1.43437 1.01157 1.02571 0.97339 1.94495 1.64804 1.24989 1.54222 1.94604 0.95551 1.93714 1.53215 1.21349 1.02629 0.88545 0.87772 1.19436 0.90946 0.94121 1.11109 1.17222 0.80999 0.86860 0.78574 1.90776 1.70944 1.31686 1.48192 1.50181 1.10181 1.19162 1.56515 1.23508 0.84260 0.94398 0.98406 1.19802 0.91171 0.86990 0.81977 1.86065 1.75081 1.59806 1.17442 1.21428 0.91210 1.33656 1.11553 0.90964 1.25058 0.99459 0.93751 0.94588 1.69379 1.36344 1.34356 1.13565 0.86381 0.83771 0.78434 0.77928 1.20979 1.19747 1.19890 1.24569 0.90588 0.95598 0.94645 0.91941 0.87235 0.91932 0.82595 0.82398 0.81292 0.90798 0.89173 0.75290 0.91527 0.89300 0.91151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.12 9.81 101.05 0.99 1.11 16 2 O -0.27 -3.70 8.86 -38.90 -0.34 -4.04 16 3 C 0.23 3.11 6.67 -38.69 -0.26 2.86 16 4 C -0.22 -2.17 9.03 -39.47 -0.36 -2.52 16 5 C 0.00 0.03 9.54 -39.53 -0.38 -0.35 16 6 C -0.09 -1.31 6.84 -79.99 -0.55 -1.86 16 7 N 0.04 0.58 4.45 33.94 0.15 0.73 16 8 O -0.17 -2.63 18.43 -29.46 -0.54 -3.18 16 9 O -0.15 -2.67 18.43 -29.46 -0.54 -3.21 16 10 C 0.02 0.26 8.33 -39.20 -0.33 -0.07 16 11 C -0.15 -2.49 5.83 -104.84 -0.61 -3.10 16 12 C 0.58 11.57 7.76 -12.47 -0.10 11.47 16 13 O -0.54 -12.05 16.29 -14.95 -0.24 -12.30 16 14 N -0.63 -12.91 3.58 -179.33 -0.64 -13.55 16 15 C 0.12 2.43 8.23 -2.97 -0.02 2.41 16 16 C 0.24 5.65 1.40 -90.85 -0.13 5.52 16 17 O -0.57 -14.42 13.49 -35.23 -0.48 -14.90 16 18 C -0.54 -13.22 8.61 -34.44 -0.30 -13.51 16 19 H 0.07 1.71 7.81 -52.49 -0.41 1.30 16 20 C 0.07 1.83 5.39 -17.82 -0.10 1.73 16 21 N -0.90 -22.45 11.20 55.43 0.62 -21.83 16 22 Si 0.91 19.30 29.54 -169.99 -5.02 14.28 16 23 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 24 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 25 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 26 C 0.07 1.42 5.69 -2.83 -0.02 1.41 16 27 H 0.06 0.35 7.66 -51.93 -0.40 -0.04 16 28 H 0.11 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.06 0.34 7.66 -51.93 -0.40 -0.06 16 30 H 0.16 0.92 6.30 -52.49 -0.33 0.59 16 31 H 0.16 1.28 7.59 -52.49 -0.40 0.88 16 32 H 0.17 2.73 5.08 -52.49 -0.27 2.46 16 33 H 0.07 1.58 8.14 -51.93 -0.42 1.16 16 34 H 0.09 1.71 8.09 -51.93 -0.42 1.29 16 35 H 0.39 9.99 6.60 45.56 0.30 10.29 16 36 H 0.27 6.60 8.31 -40.82 -0.34 6.26 16 37 H 0.09 1.76 7.70 -51.93 -0.40 1.36 16 38 H 0.07 1.49 7.86 -51.93 -0.41 1.08 16 LS Contribution 335.68 15.07 5.06 5.06 Total: -1.00 -30.20 335.68 -7.23 -37.44 By element: Atomic # 1 Polarization: 13.52 SS G_CDS: -3.11 Total: 10.41 kcal Atomic # 6 Polarization: 7.23 SS G_CDS: -2.14 Total: 5.09 kcal Atomic # 7 Polarization: -34.79 SS G_CDS: 0.13 Total: -34.66 kcal Atomic # 8 Polarization: -35.47 SS G_CDS: -2.15 Total: -37.62 kcal Atomic # 14 Polarization: 19.30 SS G_CDS: -5.02 Total: 14.28 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -30.20 -7.23 -37.44 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356551655.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.219 kcal (2) G-P(sol) polarization free energy of solvation -30.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds