Wall clock time and date at job start Fri Apr 10 2020 18:26:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35652 * 116.99976 * 2 1 4 4 C 1.38710 * 120.15289 * 359.97176 * 3 2 1 5 5 C 1.38054 * 120.08690 * 180.02562 * 4 3 2 6 6 C 1.38551 * 120.38597 * 359.97350 * 5 4 3 7 7 N 1.48025 * 119.84513 * 180.02562 * 6 5 4 8 8 O 1.21796 * 120.00163 * 359.97438 * 7 6 5 9 9 O 1.21797 * 120.00140 * 180.02562 * 7 6 5 10 10 C 1.37780 * 120.30490 * 359.79039 * 6 5 4 11 11 C 1.39715 * 119.90752 * 0.46574 * 10 6 5 12 12 C 1.47532 * 120.19043 * 179.78861 * 11 10 6 13 13 O 1.21585 * 119.99516 * 155.28760 * 12 11 10 14 14 N 1.34770 * 120.00402 * 335.28288 * 12 11 10 15 15 C 1.47579 * 134.49752 * 174.67055 * 14 12 11 16 16 C 1.53942 * 86.11966 * 155.36232 * 15 14 12 17 17 O 1.42908 * 113.73880 * 269.15469 * 16 15 14 18 18 C 1.50701 * 113.74418 * 137.95527 * 16 15 14 19 19 H 1.08000 * 119.99516 * 1.92344 * 18 16 15 20 20 C 1.37868 * 120.00132 * 181.92412 * 18 16 15 21 21 N 1.31515 * 119.99957 * 359.97438 * 20 18 16 22 22 Si 1.86804 * 120.00210 * 180.02562 * 20 18 16 23 23 H 1.48493 * 109.47354 * 180.02562 * 22 20 18 24 24 H 1.48504 * 109.46848 * 299.99891 * 22 20 18 25 25 H 1.48497 * 109.46972 * 59.99440 * 22 20 18 26 26 C 1.47822 * 134.45328 * 354.54250 * 14 12 11 27 27 H 1.09002 * 109.47122 * 60.00235 * 1 2 3 28 28 H 1.09002 * 109.47538 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47347 * 300.00623 * 1 2 3 30 30 H 1.07998 * 119.95517 * 0.04962 * 4 3 2 31 31 H 1.07999 * 119.80420 * 180.02562 * 5 4 3 32 32 H 1.07999 * 120.05130 * 180.24959 * 10 6 5 33 33 H 1.09002 * 113.76717 * 41.05434 * 15 14 12 34 34 H 1.09002 * 113.86731 * 269.67749 * 15 14 12 35 35 H 0.96696 * 113.99729 * 178.07496 * 17 16 15 36 36 H 0.97003 * 119.99949 * 180.02562 * 21 20 18 37 37 H 1.08997 * 113.77054 * 90.37921 * 26 14 12 38 38 H 1.09004 * 113.83335 * 318.90797 * 26 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0448 1.2087 0.0000 4 6 1.2924 2.3740 -0.0006 5 6 1.9206 3.6034 -0.0011 6 6 3.3038 3.6836 -0.0005 7 7 3.9648 5.0080 -0.0005 8 8 3.2931 6.0240 -0.0015 9 8 5.1806 5.0819 -0.0005 10 6 4.0667 2.5363 0.0050 11 6 3.4441 1.2856 0.0001 12 6 4.2550 0.0531 0.0012 13 8 3.7882 -0.9812 0.4377 14 7 5.5131 0.0738 -0.4815 15 6 6.6127 -0.9084 -0.5453 16 6 7.1255 -0.0995 -1.7505 17 8 6.6191 -0.5554 -3.0067 18 6 8.6193 0.0993 -1.7566 19 1 9.2254 -0.3384 -0.9772 20 6 9.2122 0.8399 -2.7570 21 7 8.4741 1.3725 -3.7063 22 14 11.0639 1.0858 -2.7649 23 1 11.4484 1.9135 -3.9363 24 1 11.4771 1.7745 -1.5158 25 1 11.7382 -0.2346 -2.8484 26 6 6.3444 1.0893 -1.1619 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 0.2138 2.3195 -0.0002 31 1 1.3303 4.5078 -0.0012 32 1 5.1446 2.6037 0.0095 33 1 6.2867 -1.9170 -0.7996 34 1 7.2787 -0.8816 0.3172 35 1 6.9155 -0.0317 -3.7636 36 1 8.8912 1.8933 -4.4104 37 1 6.9304 1.7057 -0.4803 38 1 5.8044 1.6727 -1.9077 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356551655.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:07 Heat of formation + Delta-G solvation = -69.848379 kcal Electronic energy + Delta-G solvation = -27505.652226 eV Core-core repulsion = 23318.155502 eV Total energy + Delta-G solvation = -4187.496725 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.109 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.31382 -41.99745 -40.89642 -39.03841 -38.72649 -37.69226 -35.88532 -34.17173 -33.24804 -32.42070 -30.34094 -28.78447 -27.35222 -27.18946 -26.97458 -25.05437 -23.29321 -22.13172 -21.03165 -19.85681 -19.71417 -19.39841 -19.09609 -18.65016 -18.06185 -17.63965 -17.25106 -17.03431 -16.66175 -16.29804 -16.06968 -15.70567 -15.12629 -15.02759 -14.60295 -14.39040 -14.23744 -14.06752 -13.74509 -13.47306 -13.33462 -12.92337 -12.77176 -12.73488 -12.50797 -12.43697 -12.32990 -12.30736 -12.27486 -12.24115 -11.48242 -11.08116 -10.72173 -10.66375 -10.32437 -10.02260 -9.64728 -8.27954 -6.45201 -1.27194 -0.63226 0.16730 0.29225 1.47683 1.49077 1.50448 1.57629 1.73344 1.89861 2.22385 2.40618 2.92144 2.99365 3.18403 3.37682 3.51571 3.68108 3.73813 4.09514 4.10015 4.20356 4.22594 4.34322 4.40373 4.47262 4.52756 4.56877 4.68419 4.73151 4.79177 4.87063 4.89815 5.17797 5.23364 5.70930 5.89270 5.97831 6.47456 6.60665 6.65893 6.96547 7.28098 7.39649 8.78159 Molecular weight = 322.11amu Principal moments of inertia in cm(-1) A = 0.012415 B = 0.004551 C = 0.003545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2254.871032 B = 6150.672330 C = 7896.754777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.001 3.999 2 O -0.303 6.303 3 C 0.231 3.769 4 C -0.193 4.193 5 C 0.023 3.977 6 C -0.106 4.106 7 N 0.039 4.961 8 O -0.136 6.136 9 O -0.221 6.221 10 C 0.013 3.987 11 C -0.185 4.185 12 C 0.571 3.429 13 O -0.567 6.567 14 N -0.631 5.631 15 C 0.117 3.883 16 C 0.222 3.778 17 O -0.585 6.585 18 C -0.558 4.558 19 H 0.076 0.924 20 C 0.035 3.965 21 N -0.917 5.917 22 Si 0.967 3.033 23 H -0.284 1.284 24 H -0.268 1.268 25 H -0.272 1.272 26 C 0.088 3.912 27 H 0.087 0.913 28 H 0.117 0.883 29 H 0.090 0.910 30 H 0.209 0.791 31 H 0.197 0.803 32 H 0.150 0.850 33 H 0.065 0.935 34 H 0.109 0.891 35 H 0.387 0.613 36 H 0.275 0.725 37 H 0.095 0.905 38 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.062 4.591 6.413 18.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 O -0.212 6.212 3 C 0.180 3.820 4 C -0.212 4.212 5 C 0.005 3.995 6 C -0.190 4.190 7 N 0.554 4.446 8 O -0.361 6.361 9 O -0.422 6.422 10 C -0.007 4.007 11 C -0.189 4.189 12 C 0.362 3.638 13 O -0.449 6.449 14 N -0.364 5.364 15 C -0.005 4.005 16 C 0.181 3.819 17 O -0.397 6.397 18 C -0.596 4.596 19 H 0.094 0.906 20 C -0.166 4.166 21 N -0.557 5.557 22 Si 0.792 3.208 23 H -0.209 1.209 24 H -0.193 1.193 25 H -0.198 1.198 26 C -0.034 4.034 27 H 0.106 0.894 28 H 0.135 0.865 29 H 0.109 0.891 30 H 0.226 0.774 31 H 0.214 0.786 32 H 0.168 0.832 33 H 0.083 0.917 34 H 0.127 0.873 35 H 0.242 0.758 36 H 0.085 0.915 37 H 0.113 0.887 38 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -17.912 2.805 6.916 19.405 hybrid contribution 1.590 0.916 -0.596 1.930 sum -16.322 3.722 6.320 17.894 Atomic orbital electron populations 1.23784 0.74426 1.06790 1.04213 1.86389 1.25160 1.25318 1.84380 1.19538 0.90123 0.86836 0.85535 1.21665 1.03228 0.88100 1.08170 1.21385 0.89748 1.01389 0.87026 1.20927 0.94482 0.81479 1.22142 1.43652 1.00972 1.03183 0.96833 1.94442 1.64412 1.25600 1.51684 1.94630 0.96463 1.94116 1.56962 1.21094 1.02019 0.89136 0.88469 1.19155 0.92315 0.92451 1.15003 1.17801 0.80621 0.87948 0.77438 1.90735 1.71373 1.33268 1.49507 1.50171 1.10644 1.18611 1.56999 1.23498 0.84921 0.93861 0.98233 1.20094 0.91318 0.88736 0.81780 1.86048 1.75349 1.60193 1.18115 1.21688 0.91960 1.33943 1.11962 0.90629 1.25740 1.03131 0.93478 0.94275 1.69456 1.37638 1.34654 1.13914 0.85457 0.79238 0.78193 0.77890 1.20907 1.19260 1.19759 1.24264 0.90092 0.94752 0.94292 0.89427 0.86491 0.89141 0.77406 0.78569 0.83222 0.91682 0.87288 0.75844 0.91476 0.88708 0.92085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.01 9.81 113.37 1.11 1.12 16 2 O -0.30 -7.72 8.86 -70.32 -0.62 -8.34 16 3 C 0.23 5.78 6.67 22.84 0.15 5.93 16 4 C -0.19 -2.84 9.03 22.34 0.20 -2.64 16 5 C 0.02 0.39 9.54 22.30 0.21 0.61 16 6 C -0.11 -2.81 6.84 36.34 0.25 -2.56 16 7 N 0.04 1.18 4.45 -46.54 -0.21 0.98 16 8 O -0.14 -3.81 18.43 18.89 0.35 -3.46 16 9 O -0.22 -7.95 18.43 18.89 0.35 -7.60 16 10 C 0.01 0.40 8.33 22.52 0.19 0.58 16 11 C -0.18 -6.08 5.83 -20.01 -0.12 -6.20 16 12 C 0.57 23.67 7.76 86.70 0.67 24.35 16 13 O -0.57 -26.17 16.29 15.37 0.25 -25.92 16 14 N -0.63 -26.99 3.58 -843.38 -3.02 -30.01 16 15 C 0.12 5.07 8.23 86.48 0.71 5.78 16 16 C 0.22 10.69 1.40 -10.88 -0.02 10.67 16 17 O -0.59 -30.64 13.49 -148.98 -2.01 -32.65 16 18 C -0.56 -27.79 8.61 25.60 0.22 -27.57 16 19 H 0.08 3.62 7.81 -2.91 -0.02 3.60 16 20 C 0.03 1.72 5.39 84.65 0.46 2.18 16 21 N -0.92 -46.81 11.20 21.44 0.24 -46.57 16 22 Si 0.97 39.79 29.54 68.60 2.03 41.81 16 23 H -0.28 -11.55 7.11 99.48 0.71 -10.85 16 24 H -0.27 -10.75 7.11 99.48 0.71 -10.04 16 25 H -0.27 -11.08 7.11 99.48 0.71 -10.38 16 26 C 0.09 3.85 5.69 86.44 0.49 4.34 16 27 H 0.09 0.55 7.66 -2.39 -0.02 0.53 16 28 H 0.12 1.12 8.14 -2.39 -0.02 1.10 16 29 H 0.09 0.51 7.66 -2.39 -0.02 0.50 16 30 H 0.21 0.90 6.30 -2.91 -0.02 0.88 16 31 H 0.20 1.88 7.59 -2.91 -0.02 1.86 16 32 H 0.15 5.16 5.08 -2.91 -0.01 5.15 16 33 H 0.06 2.90 8.14 -2.39 -0.02 2.88 16 34 H 0.11 4.24 8.09 -2.39 -0.02 4.22 16 35 H 0.39 20.55 6.60 -74.06 -0.49 20.06 16 36 H 0.28 13.44 8.31 -92.71 -0.77 12.67 16 37 H 0.09 3.95 7.70 -2.39 -0.02 3.93 16 38 H 0.06 2.73 7.86 -2.39 -0.02 2.71 16 Total: -1.00 -68.90 335.68 2.54 -66.36 By element: Atomic # 1 Polarization: 28.16 SS G_CDS: 0.65 Total: 28.81 kcal Atomic # 6 Polarization: 12.06 SS G_CDS: 4.54 Total: 16.60 kcal Atomic # 7 Polarization: -72.61 SS G_CDS: -2.99 Total: -75.60 kcal Atomic # 8 Polarization: -76.29 SS G_CDS: -1.69 Total: -77.98 kcal Atomic # 14 Polarization: 39.79 SS G_CDS: 2.03 Total: 41.81 kcal Total: -68.90 2.54 -66.36 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356551655.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.490 kcal (2) G-P(sol) polarization free energy of solvation -68.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds