Wall clock time and date at job start Fri Apr 10 2020 18:26:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46907 * 1 3 3 C 1.46902 * 110.99680 * 2 1 4 4 C 1.46897 * 110.99979 * 123.95091 * 2 1 3 5 5 C 1.52999 * 108.85181 * 184.47517 * 4 2 1 6 6 N 1.46509 * 109.46958 * 306.80656 * 5 4 2 7 7 S 1.65597 * 119.99909 * 163.33600 * 6 5 4 8 8 O 1.42103 * 104.27395 * 181.07223 * 7 6 5 9 9 O 1.42098 * 104.27964 * 308.93078 * 7 6 5 10 10 C 1.81402 * 104.45084 * 65.00142 * 7 6 5 11 11 C 1.52996 * 109.47307 * 179.97438 * 10 7 6 12 12 C 1.50696 * 109.46974 * 180.02562 * 11 10 7 13 13 H 1.08002 * 120.00102 * 0.02562 * 12 11 10 14 14 C 1.37877 * 120.00024 * 180.02562 * 12 11 10 15 15 N 1.31515 * 120.00019 * 180.02562 * 14 12 11 16 16 Si 1.86799 * 120.00075 * 359.97438 * 14 12 11 17 17 H 1.48503 * 109.46864 * 89.99850 * 16 14 12 18 18 H 1.48493 * 109.47479 * 210.00304 * 16 14 12 19 19 H 1.48495 * 109.47163 * 330.00432 * 16 14 12 20 20 C 1.52943 * 108.88784 * 302.91530 * 4 2 1 21 21 C 1.55156 * 108.96119 * 90.69812 * 20 4 2 22 22 S 1.83991 * 100.91088 * 41.43442 * 21 20 4 23 23 C 1.53703 * 108.88845 * 65.89962 * 4 2 1 24 24 H 1.08992 * 109.46986 * 67.23012 * 1 2 3 25 25 H 1.08999 * 109.47129 * 307.22343 * 1 2 3 26 26 H 1.09000 * 109.46323 * 187.23053 * 1 2 3 27 27 H 1.09000 * 109.47158 * 63.22056 * 3 2 1 28 28 H 1.08994 * 109.46845 * 183.22223 * 3 2 1 29 29 H 1.09006 * 109.46973 * 303.22772 * 3 2 1 30 30 H 1.09001 * 109.47267 * 66.80058 * 5 4 2 31 31 H 1.08992 * 109.47639 * 186.80903 * 5 4 2 32 32 H 0.97001 * 119.99829 * 343.33995 * 6 5 4 33 33 H 1.09003 * 109.46722 * 300.00011 * 10 7 6 34 34 H 1.09008 * 109.47027 * 59.99645 * 10 7 6 35 35 H 1.08996 * 109.47061 * 299.99900 * 11 10 7 36 36 H 1.08994 * 109.47209 * 60.00175 * 11 10 7 37 37 H 0.97003 * 119.99605 * 179.97438 * 15 14 12 38 38 H 1.09007 * 109.60122 * 210.62325 * 20 4 2 39 39 H 1.08996 * 109.60501 * 330.76157 * 20 4 2 40 40 H 1.09009 * 111.12819 * 283.52821 * 21 20 4 41 41 H 1.08993 * 111.13148 * 159.34804 * 21 20 4 42 42 H 1.09005 * 110.33886 * 0.90037 * 23 4 2 43 43 H 1.08998 * 110.34365 * 123.15817 * 23 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9955 -0.7659 1.1376 5 6 3.5203 -0.6410 1.1544 6 7 4.0557 -1.0195 -0.1557 7 16 5.6025 -0.5986 -0.5711 8 8 5.7596 -1.1002 -1.8913 9 8 5.6700 0.7955 -0.3042 10 6 6.6494 -1.5201 0.5889 11 6 8.1206 -1.2122 0.3033 12 6 8.9903 -1.9782 1.2665 13 1 8.5388 -2.6208 2.0079 14 6 10.3623 -1.8588 1.2012 15 7 11.1213 -2.5277 2.0415 16 14 11.1432 -0.7479 -0.0815 17 1 11.2994 0.6193 0.4767 18 1 12.4760 -1.2849 -0.4561 19 1 10.2749 -0.6948 -1.2850 20 6 1.4388 -0.1737 2.4332 21 6 0.1144 -0.8987 2.7906 22 16 0.5543 -2.6415 2.3976 23 6 1.6194 -2.2454 0.9581 24 1 -0.3633 0.3977 -0.9475 25 1 -0.3633 0.6217 0.8183 26 1 -0.3632 -1.0195 0.1294 27 1 1.6934 1.8766 0.9174 28 1 3.0835 1.3430 -0.0578 29 1 1.5999 1.9125 -0.8597 30 1 3.7981 0.3893 1.3765 31 1 3.9305 -1.3008 1.9189 32 1 3.5042 -1.5167 -0.7798 33 1 6.4076 -1.2248 1.6099 34 1 6.4721 -2.5888 0.4680 35 1 8.3621 -1.5077 -0.7177 36 1 8.2982 -0.1436 0.4238 37 1 12.0866 -2.4439 1.9953 38 1 2.1604 -0.3125 3.2384 39 1 1.2478 0.8906 2.2964 40 1 -0.7062 -0.5496 2.1636 41 1 -0.1243 -0.7825 3.8477 42 1 1.0678 -2.3860 0.0285 43 1 2.5143 -2.8675 0.9664 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360444852.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:18 Heat of formation + Delta-G solvation = -56.808658 kcal Electronic energy + Delta-G solvation = -24360.039001 eV Core-core repulsion = 20887.137637 eV Total energy + Delta-G solvation = -3472.901363 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 322.117 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.24649 -36.71545 -35.58613 -34.81187 -33.96077 -33.33696 -31.49211 -30.05228 -28.75197 -26.05493 -25.95905 -24.37678 -23.44195 -21.31291 -19.43290 -19.03385 -17.77111 -17.40726 -17.08360 -16.38359 -16.11354 -15.77982 -15.39899 -15.21937 -14.65252 -14.35530 -14.28541 -13.70555 -13.45094 -13.34441 -13.21748 -12.81437 -12.70806 -12.59677 -12.37793 -12.16318 -12.06302 -11.90306 -11.73825 -11.63683 -11.62641 -11.47304 -11.26922 -11.20255 -11.07133 -10.46364 -10.21882 -10.15884 -9.83095 -9.50278 -9.16942 -8.70372 -8.67100 -8.01895 -6.17312 -4.18664 0.65532 1.49024 1.94168 2.99589 3.25786 3.33379 3.37496 3.54391 3.91254 4.13242 4.22295 4.33948 4.35122 4.51173 4.58155 4.68140 4.86404 4.95200 5.04878 5.10033 5.14360 5.15262 5.19834 5.26711 5.32261 5.35161 5.40459 5.46387 5.51902 5.58886 5.66110 5.79228 5.91199 6.26731 6.61951 6.64427 6.80403 6.91872 7.09849 7.53993 8.35686 8.83865 9.42356 10.95055 Molecular weight = 322.12amu Principal moments of inertia in cm(-1) A = 0.020898 B = 0.003441 C = 0.003159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1339.495840 B = 8134.844351 C = 8862.126581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 N -0.526 5.526 3 C 0.008 3.992 4 C 0.101 3.899 5 C 0.127 3.873 6 N -1.115 6.115 7 S 2.592 3.408 8 O -0.965 6.965 9 O -0.968 6.968 10 C -0.585 4.585 11 C -0.007 4.007 12 C -0.520 4.520 13 H 0.078 0.922 14 C 0.072 3.928 15 N -0.895 5.895 16 Si 0.869 3.131 17 H -0.271 1.271 18 H -0.282 1.282 19 H -0.262 1.262 20 C -0.157 4.157 21 C -0.074 4.074 22 S -0.290 6.290 23 C -0.060 4.060 24 H 0.071 0.929 25 H 0.032 0.968 26 H 0.072 0.928 27 H 0.030 0.970 28 H 0.088 0.912 29 H 0.071 0.929 30 H 0.086 0.914 31 H 0.077 0.923 32 H 0.419 0.581 33 H 0.123 0.877 34 H 0.127 0.873 35 H 0.032 0.968 36 H 0.028 0.972 37 H 0.266 0.734 38 H 0.091 0.909 39 H 0.089 0.911 40 H 0.095 0.905 41 H 0.106 0.894 42 H 0.105 0.895 43 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.536 5.166 -0.352 25.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 N -0.249 5.249 3 C -0.139 4.139 4 C 0.008 3.992 5 C -0.001 4.001 6 N -0.874 5.874 7 S 2.689 3.311 8 O -0.955 6.955 9 O -0.958 6.958 10 C -0.718 4.718 11 C -0.046 4.046 12 C -0.559 4.559 13 H 0.096 0.904 14 C -0.131 4.131 15 N -0.533 5.533 16 Si 0.695 3.305 17 H -0.197 1.197 18 H -0.207 1.207 19 H -0.186 1.186 20 C -0.197 4.197 21 C -0.222 4.222 22 S -0.064 6.064 23 C -0.209 4.209 24 H 0.089 0.911 25 H 0.050 0.950 26 H 0.090 0.910 27 H 0.049 0.951 28 H 0.107 0.893 29 H 0.089 0.911 30 H 0.104 0.896 31 H 0.095 0.905 32 H 0.254 0.746 33 H 0.142 0.858 34 H 0.145 0.855 35 H 0.050 0.950 36 H 0.046 0.954 37 H 0.076 0.924 38 H 0.110 0.890 39 H 0.107 0.893 40 H 0.113 0.887 41 H 0.124 0.876 42 H 0.123 0.877 43 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -24.183 4.552 -0.816 24.622 hybrid contribution 0.315 1.302 -0.019 1.340 sum -23.868 5.854 -0.835 24.590 Atomic orbital electron populations 1.22660 0.87590 1.02107 1.01304 1.62286 1.07620 1.14554 1.40480 1.22673 1.02794 0.87859 1.00611 1.21818 0.95244 0.92659 0.89431 1.21482 0.91586 1.01762 0.85305 1.55546 1.32500 1.74160 1.25152 1.05543 0.73832 0.75734 0.76033 1.93567 1.85017 1.81810 1.35129 1.93532 1.85617 1.30318 1.86316 1.30317 1.12036 1.13986 1.15427 1.19398 0.88007 0.98088 0.99119 1.20850 0.90577 1.27653 1.16794 0.90412 1.24987 0.97194 0.95343 0.95581 1.69884 1.05079 1.41599 1.36764 0.86926 0.79307 0.81399 0.82829 1.19684 1.20749 1.18610 1.23048 0.96737 1.01382 0.98577 1.24555 0.99833 0.92419 1.05371 1.88015 1.63707 1.13712 1.40979 1.24184 1.01910 0.96325 0.98468 0.91053 0.94984 0.90951 0.95122 0.89318 0.91067 0.89617 0.90472 0.74606 0.85836 0.85460 0.94960 0.95413 0.92377 0.89005 0.89307 0.88710 0.87571 0.87682 0.87040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.08 7.70 60.07 0.46 0.54 16 2 N -0.53 -4.38 4.28 -235.01 -1.01 -5.38 16 3 C 0.01 0.07 8.68 60.07 0.52 0.60 16 4 C 0.10 0.82 0.38 -131.27 -0.05 0.77 16 5 C 0.13 1.22 3.76 -4.04 -0.02 1.21 16 6 N -1.12 -12.66 5.02 -10.61 -0.05 -12.71 16 7 S 2.59 41.40 5.46 -107.50 -0.59 40.82 16 8 O -0.96 -18.48 18.08 -57.54 -1.04 -19.52 16 9 O -0.97 -17.61 17.21 -57.54 -0.99 -18.60 16 10 C -0.58 -10.25 6.01 37.16 0.22 -10.02 16 11 C -0.01 -0.16 4.05 -27.89 -0.11 -0.27 16 12 C -0.52 -14.36 9.66 -34.44 -0.33 -14.69 16 13 H 0.08 2.26 7.99 -52.49 -0.42 1.84 16 14 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 15 N -0.90 -26.92 13.96 55.43 0.77 -26.15 16 16 Si 0.87 21.34 27.47 -169.99 -4.67 16.67 16 17 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 18 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 19 H -0.26 -6.22 6.54 56.52 0.37 -5.85 16 20 C -0.16 -1.08 4.62 -25.62 -0.12 -1.20 16 21 C -0.07 -0.49 6.71 38.30 0.26 -0.23 16 22 S -0.29 -2.65 23.06 -107.50 -2.48 -5.13 16 23 C -0.06 -0.50 5.29 37.52 0.20 -0.30 16 24 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.03 0.19 5.93 -51.93 -0.31 -0.12 16 26 H 0.07 0.49 5.79 -51.93 -0.30 0.19 16 27 H 0.03 0.23 6.19 -51.93 -0.32 -0.09 16 28 H 0.09 0.98 5.71 -51.93 -0.30 0.69 16 29 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.09 0.85 6.17 -51.93 -0.32 0.53 16 31 H 0.08 0.66 8.12 -51.93 -0.42 0.24 16 32 H 0.42 4.29 8.01 -34.47 -0.28 4.01 16 33 H 0.12 1.92 8.14 -51.92 -0.42 1.50 16 34 H 0.13 2.04 8.14 -51.92 -0.42 1.62 16 35 H 0.03 0.76 7.20 -51.93 -0.37 0.38 16 36 H 0.03 0.64 7.57 -51.93 -0.39 0.24 16 37 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 38 H 0.09 0.63 7.83 -51.93 -0.41 0.22 16 39 H 0.09 0.56 5.51 -51.93 -0.29 0.28 16 40 H 0.09 0.55 5.55 -51.92 -0.29 0.26 16 41 H 0.11 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.10 0.85 6.86 -51.93 -0.36 0.49 16 43 H 0.11 0.93 7.54 -51.93 -0.39 0.54 16 LS Contribution 348.60 15.07 5.25 5.25 Total: -1.00 -34.07 348.60 -10.30 -44.37 By element: Atomic # 1 Polarization: 8.46 SS G_CDS: -6.44 Total: 2.02 kcal Atomic # 6 Polarization: -22.59 SS G_CDS: 0.94 Total: -21.65 kcal Atomic # 7 Polarization: -43.95 SS G_CDS: -0.29 Total: -44.24 kcal Atomic # 8 Polarization: -36.09 SS G_CDS: -2.03 Total: -38.12 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -4.67 Total: 16.67 kcal Atomic # 16 Polarization: 38.76 SS G_CDS: -3.07 Total: 35.69 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -34.07 -10.30 -44.37 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360444852.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.436 kcal (2) G-P(sol) polarization free energy of solvation -34.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds