Wall clock time and date at job start Fri Apr 10 2020 18:26:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46891 * 110.99994 * 2 1 4 4 C 1.46897 * 110.99524 * 123.95687 * 2 1 3 5 5 C 1.52997 * 108.85236 * 299.31757 * 4 2 1 6 6 N 1.46501 * 109.47166 * 173.93025 * 5 4 2 7 7 S 1.65599 * 119.99979 * 163.34979 * 6 5 4 8 8 O 1.42096 * 104.27953 * 308.93068 * 7 6 5 9 9 O 1.42099 * 104.27894 * 181.06909 * 7 6 5 10 10 C 1.81404 * 104.44573 * 65.00326 * 7 6 5 11 11 C 1.53003 * 109.46865 * 180.02562 * 10 7 6 12 12 C 1.50701 * 109.46921 * 180.02562 * 11 10 7 13 13 H 1.07999 * 119.99991 * 359.97438 * 12 11 10 14 14 C 1.37875 * 119.99833 * 179.97438 * 12 11 10 15 15 N 1.31507 * 120.00408 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 119.99884 * 179.97438 * 14 12 11 17 17 H 1.48504 * 109.47469 * 0.02562 * 16 14 12 18 18 H 1.48503 * 109.47162 * 119.99992 * 16 14 12 19 19 H 1.48502 * 109.47446 * 239.99924 * 16 14 12 20 20 C 1.52944 * 108.77196 * 180.80204 * 4 2 1 21 21 C 1.55155 * 108.96452 * 209.18163 * 20 4 2 22 22 S 1.83988 * 100.90653 * 41.44004 * 21 20 4 23 23 C 1.53709 * 108.89050 * 57.89729 * 4 2 1 24 24 H 1.08994 * 109.47160 * 295.56049 * 1 2 3 25 25 H 1.09010 * 109.47207 * 55.56044 * 1 2 3 26 26 H 1.09002 * 109.47628 * 175.55977 * 1 2 3 27 27 H 1.09004 * 109.46914 * 183.95090 * 3 2 1 28 28 H 1.08998 * 109.47769 * 303.95736 * 3 2 1 29 29 H 1.09005 * 109.47136 * 63.95848 * 3 2 1 30 30 H 1.08991 * 109.47158 * 53.92876 * 5 4 2 31 31 H 1.09001 * 109.46874 * 293.92492 * 5 4 2 32 32 H 0.97004 * 120.00032 * 343.35724 * 6 5 4 33 33 H 1.08996 * 109.47451 * 59.99530 * 10 7 6 34 34 H 1.08997 * 109.46967 * 299.99521 * 10 7 6 35 35 H 1.08997 * 109.46774 * 299.99440 * 11 10 7 36 36 H 1.08994 * 109.47635 * 59.99985 * 11 10 7 37 37 H 0.97003 * 120.00298 * 179.97438 * 15 14 12 38 38 H 1.09001 * 109.60400 * 329.11813 * 20 4 2 39 39 H 1.09006 * 109.59769 * 89.25470 * 20 4 2 40 40 H 1.09004 * 111.12824 * 283.53202 * 21 20 4 41 41 H 1.08994 * 111.16852 * 159.36682 * 21 20 4 42 42 H 1.09001 * 110.33755 * 242.34940 * 23 4 2 43 43 H 1.09000 * 110.34026 * 4.49667 * 23 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3713 0.0000 4 6 1.9953 -0.7660 1.1376 5 6 1.5106 -0.1186 2.4363 6 7 1.9055 -0.9520 3.5745 7 16 1.8898 -0.3230 5.1063 8 8 2.6284 0.8860 4.9962 9 8 2.3470 -1.3887 5.9275 10 6 0.1403 0.0274 5.4337 11 6 -0.0072 0.6206 6.8363 12 6 -1.4607 0.9110 7.1085 13 1 -2.2047 0.6946 6.3562 14 6 -1.8405 1.4530 8.3180 15 7 -0.9346 1.7161 9.2343 16 14 -3.6421 1.8137 8.6552 17 1 -4.4538 1.4293 7.4726 18 1 -4.0902 1.0342 9.8371 19 1 -3.8147 3.2639 8.9244 20 6 3.5235 -0.7161 1.0997 21 6 4.0864 -2.0108 1.7432 22 16 2.9416 -3.2718 1.0470 23 6 1.4521 -2.2021 1.0645 24 1 -0.3633 0.4434 0.9270 25 1 -0.3634 0.5812 -0.8476 26 1 -0.3634 -1.0246 -0.0796 27 1 3.0828 1.3431 -0.0708 28 1 1.5898 1.9163 -0.8523 29 1 1.7044 1.8723 0.9234 30 1 0.4248 -0.0263 2.4130 31 1 1.9573 0.8705 2.5379 32 1 2.1764 -1.8724 3.4309 33 1 -0.4340 -0.8967 5.3673 34 1 -0.2315 0.7399 4.6974 35 1 0.3647 -0.0916 7.5729 36 1 0.5669 1.5447 6.9022 37 1 -1.2019 2.0978 10.0851 38 1 3.8616 -0.6447 0.0659 39 1 3.8749 0.1521 1.6574 40 1 4.0147 -1.9726 2.8302 41 1 5.1128 -2.1940 1.4258 42 1 0.8392 -2.4202 1.9391 43 1 0.8725 -2.3419 0.1520 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360444853.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:19 Heat of formation + Delta-G solvation = -86.925679 kcal Electronic energy + Delta-G solvation = -24454.220462 eV Core-core repulsion = 20980.013127 eV Total energy + Delta-G solvation = -3474.207335 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 322.117 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.90339 -38.20376 -37.07719 -35.99049 -35.91530 -33.96673 -33.14969 -30.83706 -28.72402 -27.62068 -27.25948 -25.39982 -23.83021 -23.63065 -20.51896 -20.08980 -19.16366 -18.39189 -18.03238 -17.51348 -17.17695 -16.74657 -16.51911 -16.48794 -16.09119 -15.46917 -15.20694 -14.73006 -14.65229 -14.60926 -14.46289 -13.76044 -13.72396 -13.42877 -13.26528 -13.17413 -13.14215 -12.98397 -12.96905 -12.95283 -12.80023 -12.61533 -12.30137 -12.28593 -12.14884 -12.10784 -12.03700 -11.75912 -11.21214 -10.92897 -10.67103 -10.46038 -9.32371 -8.72201 -8.27596 -6.41670 -0.75281 0.83723 1.30278 1.40426 1.40908 1.53941 1.73958 2.36677 2.73185 2.80244 3.06291 3.18614 3.34952 3.53773 3.67205 3.93228 3.97728 4.07179 4.11646 4.21659 4.26657 4.29208 4.42629 4.56809 4.57969 4.67531 4.70477 4.72646 4.77094 4.83146 4.89546 5.01161 5.11075 5.13902 5.24407 5.25294 5.66780 5.83695 5.99024 5.99727 6.04132 6.72250 7.28912 8.84878 Molecular weight = 322.12amu Principal moments of inertia in cm(-1) A = 0.017824 B = 0.003587 C = 0.003320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1570.510440 B = 7804.325181 C = 8432.172543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.002 3.998 2 N -0.524 5.524 3 C 0.006 3.994 4 C 0.112 3.888 5 C 0.073 3.927 6 N -1.106 6.106 7 S 2.617 3.383 8 O -0.991 6.991 9 O -0.997 6.997 10 C -0.587 4.587 11 C 0.019 3.981 12 C -0.538 4.538 13 H 0.077 0.923 14 C -0.003 4.003 15 N -0.934 5.934 16 Si 0.973 3.027 17 H -0.255 1.255 18 H -0.279 1.279 19 H -0.278 1.278 20 C -0.114 4.114 21 C -0.070 4.070 22 S -0.318 6.318 23 C -0.062 4.062 24 H 0.037 0.963 25 H 0.085 0.915 26 H 0.080 0.920 27 H 0.078 0.922 28 H 0.085 0.915 29 H 0.031 0.969 30 H 0.090 0.910 31 H 0.086 0.914 32 H 0.420 0.580 33 H 0.143 0.857 34 H 0.143 0.857 35 H 0.005 0.995 36 H 0.008 0.992 37 H 0.267 0.733 38 H 0.101 0.899 39 H 0.087 0.913 40 H 0.084 0.916 41 H 0.125 0.875 42 H 0.100 0.900 43 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.324 -4.446 -22.696 23.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 N -0.248 5.248 3 C -0.141 4.141 4 C 0.019 3.981 5 C -0.055 4.055 6 N -0.870 5.870 7 S 2.714 3.286 8 O -0.981 6.981 9 O -0.987 6.987 10 C -0.719 4.719 11 C -0.019 4.019 12 C -0.577 4.577 13 H 0.095 0.905 14 C -0.202 4.202 15 N -0.574 5.574 16 Si 0.797 3.203 17 H -0.178 1.178 18 H -0.205 1.205 19 H -0.204 1.204 20 C -0.153 4.153 21 C -0.218 4.218 22 S -0.092 6.092 23 C -0.210 4.210 24 H 0.055 0.945 25 H 0.103 0.897 26 H 0.099 0.901 27 H 0.097 0.903 28 H 0.104 0.896 29 H 0.049 0.951 30 H 0.108 0.892 31 H 0.104 0.896 32 H 0.258 0.742 33 H 0.161 0.839 34 H 0.161 0.839 35 H 0.024 0.976 36 H 0.026 0.974 37 H 0.076 0.924 38 H 0.120 0.880 39 H 0.105 0.895 40 H 0.102 0.898 41 H 0.143 0.857 42 H 0.119 0.881 43 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 5.415 -5.451 -22.789 24.049 hybrid contribution -1.562 1.410 1.667 2.685 sum 3.853 -4.040 -21.121 21.847 Atomic orbital electron populations 1.22737 0.86279 1.03604 1.01950 1.62498 1.09014 1.14547 1.38706 1.22658 1.01822 0.87984 1.01662 1.21721 0.95296 0.93020 0.88107 1.22504 1.01645 0.95161 0.86227 1.55446 1.84609 1.24482 1.22423 1.04597 0.78165 0.73141 0.72740 1.93502 1.69690 1.49177 1.85721 1.93517 1.80889 1.56269 1.68003 1.30329 1.22553 1.11803 1.07255 1.18828 0.99003 0.95125 0.88979 1.21532 0.92734 1.42212 1.01190 0.90535 1.26101 1.03035 0.95102 0.95915 1.70102 1.35887 1.44269 1.07109 0.85276 0.78509 0.77887 0.78646 1.17849 1.20497 1.20359 1.22482 0.92027 0.97470 1.03331 1.24511 1.01512 0.93446 1.02371 1.88017 1.10153 1.25998 1.85054 1.24227 0.96904 0.92464 1.07426 0.94456 0.89667 0.90118 0.90345 0.89646 0.95052 0.89201 0.89617 0.74249 0.83859 0.83921 0.97621 0.97406 0.92391 0.88016 0.89465 0.89784 0.85718 0.88111 0.85827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.02 8.84 127.69 1.13 1.15 16 2 N -0.52 -7.09 4.70 -897.45 -4.22 -11.31 16 3 C 0.01 0.08 8.87 127.69 1.13 1.21 16 4 C 0.11 1.75 0.48 3.75 0.00 1.75 16 5 C 0.07 1.37 3.98 86.38 0.34 1.71 16 6 N -1.11 -25.76 4.71 -187.50 -0.88 -26.64 16 7 S 2.62 89.12 5.46 -56.49 -0.31 88.81 16 8 O -0.99 -39.12 17.48 -127.65 -2.23 -41.35 16 9 O -1.00 -40.82 18.08 -127.65 -2.31 -43.13 16 10 C -0.59 -21.11 6.01 71.98 0.43 -20.68 16 11 C 0.02 1.00 4.98 29.85 0.15 1.15 16 12 C -0.54 -29.15 9.11 25.60 0.23 -28.92 16 13 H 0.08 3.81 7.74 -2.91 -0.02 3.79 16 14 C 0.00 -0.17 5.46 84.66 0.46 0.29 16 15 N -0.93 -56.18 13.29 21.45 0.28 -55.90 16 16 Si 0.97 42.52 29.54 68.60 2.03 44.54 16 17 H -0.25 -10.33 7.11 99.48 0.71 -9.62 16 18 H -0.28 -12.01 7.11 99.48 0.71 -11.31 16 19 H -0.28 -11.88 7.11 99.48 0.71 -11.18 16 20 C -0.11 -1.79 3.84 31.31 0.12 -1.67 16 21 C -0.07 -1.21 6.78 72.72 0.49 -0.72 16 22 S -0.32 -6.23 22.96 -56.49 -1.30 -7.52 16 23 C -0.06 -0.99 5.22 72.22 0.38 -0.61 16 24 H 0.04 0.44 6.11 -2.39 -0.01 0.43 16 25 H 0.08 0.81 8.11 -2.38 -0.02 0.79 16 26 H 0.08 0.82 6.23 -2.39 -0.01 0.80 16 27 H 0.08 0.91 6.61 -2.38 -0.02 0.90 16 28 H 0.08 0.86 8.11 -2.39 -0.02 0.84 16 29 H 0.03 0.43 6.47 -2.38 -0.02 0.42 16 30 H 0.09 1.41 6.04 -2.39 -0.01 1.39 16 31 H 0.09 1.72 6.02 -2.39 -0.01 1.71 16 32 H 0.42 9.07 5.37 -96.74 -0.52 8.55 16 33 H 0.14 4.50 8.14 -2.39 -0.02 4.48 16 34 H 0.14 4.34 8.14 -2.39 -0.02 4.32 16 35 H 0.01 0.31 8.14 -2.39 -0.02 0.29 16 36 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 37 H 0.27 15.00 8.31 -92.71 -0.77 14.23 16 38 H 0.10 1.45 7.64 -2.39 -0.02 1.43 16 39 H 0.09 1.41 7.52 -2.38 -0.02 1.39 16 40 H 0.08 1.63 6.54 -2.38 -0.02 1.61 16 41 H 0.12 1.76 8.14 -2.39 -0.02 1.74 16 42 H 0.10 1.56 6.86 -2.39 -0.02 1.55 16 43 H 0.12 1.75 6.35 -2.39 -0.02 1.74 16 Total: -1.00 -73.59 351.86 -3.56 -77.15 By element: Atomic # 1 Polarization: 20.18 SS G_CDS: 0.50 Total: 20.68 kcal Atomic # 6 Polarization: -50.20 SS G_CDS: 4.87 Total: -45.33 kcal Atomic # 7 Polarization: -89.03 SS G_CDS: -4.82 Total: -93.85 kcal Atomic # 8 Polarization: -79.94 SS G_CDS: -4.54 Total: -84.48 kcal Atomic # 14 Polarization: 42.52 SS G_CDS: 2.03 Total: 44.54 kcal Atomic # 16 Polarization: 82.89 SS G_CDS: -1.61 Total: 81.29 kcal Total: -73.59 -3.56 -77.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360444853.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.772 kcal (2) G-P(sol) polarization free energy of solvation -73.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.153 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds