Wall clock time and date at job start Fri Apr 10 2020 18:26:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86794 * 119.99765 * 2 1 4 4 H 1.48504 * 109.46887 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47066 * 299.99503 * 3 2 1 6 6 H 1.48499 * 109.47339 * 60.00004 * 3 2 1 7 7 C 1.38955 * 119.99828 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99767 * 180.02562 * 7 2 1 9 9 N 1.37092 * 120.00107 * 0.02562 * 7 2 1 10 10 C 1.34784 * 119.99968 * 179.97438 * 9 7 2 11 11 O 1.21291 * 119.99407 * 359.97438 * 10 9 7 12 12 C 1.50697 * 119.99774 * 179.72830 * 10 9 7 13 13 N 1.46507 * 109.47005 * 180.02562 * 12 10 9 14 14 C 1.34770 * 120.00400 * 179.97438 * 13 12 10 15 15 O 1.21287 * 119.99723 * 0.02562 * 14 13 12 16 16 C 1.50698 * 120.00389 * 179.97438 * 14 13 12 17 17 H 1.08997 * 109.68982 * 59.99942 * 16 14 13 18 18 C 1.53409 * 109.69727 * 299.44714 * 16 14 13 19 19 O 1.42810 * 108.36953 * 175.59631 * 18 16 14 20 20 C 1.35907 * 117.87258 * 49.13857 * 19 18 16 21 21 C 1.39131 * 118.45815 * 162.95396 * 20 19 18 22 22 C 1.37968 * 120.25371 * 179.79559 * 21 20 19 23 23 C 1.38485 * 119.92505 * 359.96761 * 22 21 20 24 24 F 1.35099 * 120.03351 * 180.08514 * 23 22 21 25 25 C 1.38284 * 119.92942 * 0.08818 * 23 22 21 26 26 C 1.38353 * 121.80349 * 342.85996 * 20 19 18 27 27 C 1.50768 * 121.40678 * 0.34813 * 26 20 19 28 28 H 0.96990 * 120.00373 * 0.02562 * 1 2 3 29 29 H 0.97005 * 120.00185 * 359.97438 * 9 7 2 30 30 H 1.09001 * 109.46809 * 299.99238 * 12 10 9 31 31 H 1.08993 * 109.47525 * 59.99679 * 12 10 9 32 32 H 0.97004 * 119.99553 * 359.97438 * 13 12 10 33 33 H 1.09002 * 109.68468 * 295.26915 * 18 16 14 34 34 H 1.09001 * 109.68469 * 55.83232 * 18 16 14 35 35 H 1.08009 * 119.87616 * 359.76716 * 21 20 19 36 36 H 1.07994 * 120.03950 * 179.97438 * 22 21 20 37 37 H 1.08003 * 119.84847 * 179.97438 * 25 23 22 38 38 H 1.09007 * 109.43380 * 222.24393 * 27 26 20 39 39 H 1.09002 * 109.43696 * 102.38853 * 27 26 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6177 0.0000 4 1 3.7081 1.3464 0.0006 5 1 1.8893 2.3964 -1.2126 6 1 1.8893 2.3964 1.2125 7 6 2.0089 -1.2034 0.0005 8 1 3.0889 -1.2034 0.0010 9 7 1.3234 -2.3907 0.0005 10 6 1.9973 -3.5579 0.0005 11 8 3.2102 -3.5578 0.0001 12 6 1.2438 -4.8630 0.0067 13 7 2.1958 -5.9766 0.0061 14 6 1.7466 -7.2472 0.0116 15 8 0.5542 -7.4688 0.0166 16 6 2.7259 -8.3926 0.0103 17 1 3.3585 -8.3359 0.8961 18 6 3.5960 -8.3277 -1.2515 19 8 4.5786 -9.3611 -1.1743 20 6 4.1581 -10.6160 -0.8654 21 6 5.0081 -11.6846 -1.1323 22 6 4.6204 -12.9736 -0.8297 23 6 3.3809 -13.2059 -0.2576 24 9 2.9997 -14.4671 0.0411 25 6 2.5337 -12.1456 0.0076 26 6 2.9189 -10.8503 -0.2965 27 6 1.9658 -9.7212 0.0034 28 1 -0.4850 0.8399 -0.0004 29 1 0.3533 -2.3907 0.0005 30 1 0.6209 -4.9186 0.8995 31 1 0.6134 -4.9228 -0.8804 32 1 3.1495 -5.7993 0.0017 33 1 2.9744 -8.4782 -2.1342 34 1 4.0873 -7.3564 -1.3091 35 1 5.9751 -11.5044 -1.5784 36 1 5.2828 -13.8005 -1.0388 37 1 1.5671 -12.3283 0.4534 38 1 1.5083 -9.8824 0.9795 39 1 1.1884 -9.6903 -0.7600 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000376237210.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:29 Heat of formation + Delta-G solvation = -139.005592 kcal Electronic energy + Delta-G solvation = -25733.120961 eV Core-core repulsion = 21554.998144 eV Total energy + Delta-G solvation = -4178.122817 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.116 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -49.10368 -41.25692 -39.63164 -38.24784 -37.58735 -34.67262 -34.46882 -33.81866 -31.51215 -31.24766 -30.24655 -27.91895 -26.04179 -25.05337 -24.07800 -23.14864 -21.26199 -19.99420 -19.58908 -18.29635 -18.23738 -17.86386 -17.33828 -16.98493 -15.91979 -15.79520 -15.65331 -15.53725 -15.21646 -14.80347 -14.79334 -14.55301 -14.29575 -13.92100 -13.71298 -13.60161 -13.52028 -13.32184 -13.15753 -12.78334 -12.30331 -12.04440 -11.69833 -11.60432 -11.44472 -11.19345 -11.13771 -10.95723 -10.45819 -10.38335 -9.91127 -9.71347 -9.31421 -8.98749 -8.72370 -8.39961 -8.17235 -6.57905 -4.00134 0.77550 0.85841 2.52106 2.83904 3.05697 3.08363 3.18981 3.23334 3.26837 3.65629 3.92747 4.05415 4.18108 4.25222 4.30429 4.46912 4.63924 4.75022 4.77371 4.89655 4.97952 5.10396 5.14980 5.19745 5.28840 5.48145 5.58460 5.72290 5.76319 5.79303 5.81456 5.84419 5.95445 5.97685 6.35016 6.48292 7.01862 7.40276 7.58115 7.84864 8.20511 8.37561 8.98015 9.31735 9.78975 10.58864 Molecular weight = 322.12amu Principal moments of inertia in cm(-1) A = 0.040060 B = 0.002048 C = 0.001964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 698.775520 B =13667.627192 C =14252.495281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.026 3.974 3 Si 0.933 3.067 4 H -0.267 1.267 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.305 4.305 8 H 0.107 0.893 9 N -0.547 5.547 10 C 0.426 3.574 11 O -0.598 6.598 12 C 0.108 3.892 13 N -0.704 5.704 14 C 0.520 3.480 15 O -0.541 6.541 16 C -0.146 4.146 17 H 0.115 0.885 18 C 0.071 3.929 19 O -0.305 6.305 20 C 0.121 3.879 21 C -0.118 4.118 22 C -0.123 4.123 23 C 0.065 3.935 24 F -0.142 7.142 25 C -0.117 4.117 26 C -0.126 4.126 27 C -0.061 4.061 28 H 0.274 0.726 29 H 0.396 0.604 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.412 0.588 33 H 0.075 0.925 34 H 0.120 0.880 35 H 0.142 0.858 36 H 0.141 0.859 37 H 0.139 0.861 38 H 0.093 0.907 39 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.430 -21.988 -1.618 22.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.177 4.177 3 Si 0.760 3.240 4 H -0.191 1.191 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.435 4.435 8 H 0.124 0.876 9 N -0.182 5.182 10 C 0.211 3.789 11 O -0.484 6.484 12 C -0.020 4.020 13 N -0.358 5.358 14 C 0.305 3.695 15 O -0.418 6.418 16 C -0.168 4.168 17 H 0.133 0.867 18 C -0.005 4.005 19 O -0.218 6.218 20 C 0.075 3.925 21 C -0.137 4.137 22 C -0.141 4.141 23 C 0.046 3.954 24 F -0.120 7.120 25 C -0.135 4.135 26 C -0.127 4.127 27 C -0.098 4.098 28 H 0.084 0.916 29 H 0.230 0.770 30 H 0.103 0.897 31 H 0.103 0.897 32 H 0.250 0.750 33 H 0.094 0.906 34 H 0.138 0.862 35 H 0.160 0.840 36 H 0.159 0.841 37 H 0.157 0.843 38 H 0.112 0.888 39 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 5.409 -21.900 -1.643 22.618 hybrid contribution -0.148 0.817 0.189 0.851 sum 5.261 -21.084 -1.454 21.779 Atomic orbital electron populations 1.69616 1.06035 1.28534 1.49147 1.25347 0.95685 1.00019 0.96690 0.85746 0.79690 0.80724 0.77871 1.19093 1.20570 1.20580 1.19784 0.93508 0.81934 1.48262 0.87559 1.41810 1.09511 1.04511 1.62360 1.19708 0.88295 0.84962 0.85895 1.90502 1.13653 1.86777 1.57518 1.20998 0.91830 0.85738 1.03427 1.45748 1.11803 1.04615 1.73607 1.20036 0.89162 0.83493 0.76810 1.90714 1.16435 1.84707 1.49965 1.21991 0.98197 0.94812 1.01751 0.86690 1.23035 0.90412 0.90747 0.96292 1.86070 1.35876 1.14739 1.85128 1.18758 0.92925 0.84995 0.95787 1.20446 1.00878 0.89524 1.02814 1.20917 0.95408 0.97561 1.00249 1.17490 0.95014 0.79287 1.03645 1.91493 1.91491 1.37578 1.91483 1.20868 1.00363 0.90713 1.01595 1.19703 0.95506 0.95167 1.02326 1.20343 0.96082 0.88614 1.04751 0.91567 0.77020 0.89671 0.89650 0.74979 0.90638 0.86167 0.84012 0.84122 0.84295 0.88833 0.88545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.32 13.05 55.50 0.72 -22.60 16 2 C 0.03 0.66 5.50 -17.47 -0.10 0.56 16 3 Si 0.93 20.08 29.55 -169.99 -5.02 15.06 16 4 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 5 H -0.28 -5.95 7.11 56.52 0.40 -5.54 16 6 H -0.28 -5.96 7.11 56.52 0.40 -5.55 16 7 C -0.31 -8.07 9.68 -14.93 -0.14 -8.22 16 8 H 0.11 2.93 7.16 -52.48 -0.38 2.56 16 9 N -0.55 -13.08 5.29 -10.96 -0.06 -13.14 16 10 C 0.43 9.26 7.85 -10.98 -0.09 9.17 16 11 O -0.60 -14.55 15.24 5.55 0.08 -14.47 16 12 C 0.11 1.83 6.15 -5.19 -0.03 1.79 16 13 N -0.70 -10.35 5.41 -61.47 -0.33 -10.68 16 14 C 0.52 7.07 7.16 -10.99 -0.08 6.99 16 15 O -0.54 -8.94 15.79 5.55 0.09 -8.86 16 16 C -0.15 -1.51 2.76 -91.53 -0.25 -1.76 16 17 H 0.12 1.09 8.14 -51.93 -0.42 0.66 16 18 C 0.07 0.68 6.26 37.37 0.23 0.91 16 19 O -0.30 -3.17 10.27 -19.45 -0.20 -3.37 16 20 C 0.12 1.21 6.47 -39.21 -0.25 0.96 16 21 C -0.12 -1.01 9.93 -39.35 -0.39 -1.40 16 22 C -0.12 -0.99 10.02 -39.59 -0.40 -1.39 16 23 C 0.06 0.61 7.30 -39.47 -0.29 0.32 16 24 F -0.14 -1.43 17.27 2.25 0.04 -1.39 16 25 C -0.12 -1.08 9.64 -39.46 -0.38 -1.46 16 26 C -0.13 -1.23 5.75 -104.44 -0.60 -1.83 16 27 C -0.06 -0.60 4.66 -27.82 -0.13 -0.73 16 28 H 0.27 6.75 8.31 -40.82 -0.34 6.41 16 29 H 0.40 9.10 7.90 -40.82 -0.32 8.77 16 30 H 0.09 1.40 8.14 -51.93 -0.42 0.97 16 31 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 32 H 0.41 5.90 6.87 -40.82 -0.28 5.62 16 33 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.12 1.06 7.53 -51.93 -0.39 0.66 16 35 H 0.14 0.96 8.06 -52.48 -0.42 0.54 16 36 H 0.14 0.82 8.06 -52.49 -0.42 0.40 16 37 H 0.14 1.08 8.06 -52.48 -0.42 0.66 16 38 H 0.09 0.89 8.14 -51.92 -0.42 0.46 16 39 H 0.10 1.01 7.70 -51.93 -0.40 0.61 16 LS Contribution 342.67 15.07 5.16 5.16 Total: -1.00 -30.52 342.67 -6.70 -37.22 By element: Atomic # 1 Polarization: 17.43 SS G_CDS: -4.29 Total: 13.14 kcal Atomic # 6 Polarization: 6.82 SS G_CDS: -2.90 Total: 3.92 kcal Atomic # 7 Polarization: -46.75 SS G_CDS: 0.33 Total: -46.42 kcal Atomic # 8 Polarization: -26.67 SS G_CDS: -0.03 Total: -26.70 kcal Atomic # 9 Polarization: -1.43 SS G_CDS: 0.04 Total: -1.39 kcal Atomic # 14 Polarization: 20.08 SS G_CDS: -5.02 Total: 15.06 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -30.52 -6.70 -37.22 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000376237210.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.787 kcal (2) G-P(sol) polarization free energy of solvation -30.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds