Wall clock time and date at job start Fri Apr 10 2020 18:26:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86794 * 119.99765 * 2 1 4 4 H 1.48504 * 109.46887 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47066 * 299.99503 * 3 2 1 6 6 H 1.48499 * 109.47339 * 60.00004 * 3 2 1 7 7 C 1.38955 * 119.99828 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99767 * 180.02562 * 7 2 1 9 9 N 1.37092 * 120.00107 * 0.02562 * 7 2 1 10 10 C 1.34784 * 119.99968 * 179.97438 * 9 7 2 11 11 O 1.21291 * 119.99407 * 359.97438 * 10 9 7 12 12 C 1.50697 * 119.99774 * 179.72830 * 10 9 7 13 13 N 1.46507 * 109.47005 * 180.02562 * 12 10 9 14 14 C 1.34770 * 120.00400 * 179.97438 * 13 12 10 15 15 O 1.21287 * 119.99723 * 0.02562 * 14 13 12 16 16 C 1.50698 * 120.00389 * 179.97438 * 14 13 12 17 17 H 1.08997 * 109.68982 * 59.99942 * 16 14 13 18 18 C 1.53409 * 109.69727 * 299.44714 * 16 14 13 19 19 O 1.42810 * 108.36953 * 175.59631 * 18 16 14 20 20 C 1.35907 * 117.87258 * 49.13857 * 19 18 16 21 21 C 1.39131 * 118.45815 * 162.95396 * 20 19 18 22 22 C 1.37968 * 120.25371 * 179.79559 * 21 20 19 23 23 C 1.38485 * 119.92505 * 359.96761 * 22 21 20 24 24 F 1.35099 * 120.03351 * 180.08514 * 23 22 21 25 25 C 1.38284 * 119.92942 * 0.08818 * 23 22 21 26 26 C 1.38353 * 121.80349 * 342.85996 * 20 19 18 27 27 C 1.50768 * 121.40678 * 0.34813 * 26 20 19 28 28 H 0.96990 * 120.00373 * 0.02562 * 1 2 3 29 29 H 0.97005 * 120.00185 * 359.97438 * 9 7 2 30 30 H 1.09001 * 109.46809 * 299.99238 * 12 10 9 31 31 H 1.08993 * 109.47525 * 59.99679 * 12 10 9 32 32 H 0.97004 * 119.99553 * 359.97438 * 13 12 10 33 33 H 1.09002 * 109.68468 * 295.26915 * 18 16 14 34 34 H 1.09001 * 109.68469 * 55.83232 * 18 16 14 35 35 H 1.08009 * 119.87616 * 359.76716 * 21 20 19 36 36 H 1.07994 * 120.03950 * 179.97438 * 22 21 20 37 37 H 1.08003 * 119.84847 * 179.97438 * 25 23 22 38 38 H 1.09007 * 109.43380 * 222.24393 * 27 26 20 39 39 H 1.09002 * 109.43696 * 102.38853 * 27 26 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6177 0.0000 4 1 3.7081 1.3464 0.0006 5 1 1.8893 2.3964 -1.2126 6 1 1.8893 2.3964 1.2125 7 6 2.0089 -1.2034 0.0005 8 1 3.0889 -1.2034 0.0010 9 7 1.3234 -2.3907 0.0005 10 6 1.9973 -3.5579 0.0005 11 8 3.2102 -3.5578 0.0001 12 6 1.2438 -4.8630 0.0067 13 7 2.1958 -5.9766 0.0061 14 6 1.7466 -7.2472 0.0116 15 8 0.5542 -7.4688 0.0166 16 6 2.7259 -8.3926 0.0103 17 1 3.3585 -8.3359 0.8961 18 6 3.5960 -8.3277 -1.2515 19 8 4.5786 -9.3611 -1.1743 20 6 4.1581 -10.6160 -0.8654 21 6 5.0081 -11.6846 -1.1323 22 6 4.6204 -12.9736 -0.8297 23 6 3.3809 -13.2059 -0.2576 24 9 2.9997 -14.4671 0.0411 25 6 2.5337 -12.1456 0.0076 26 6 2.9189 -10.8503 -0.2965 27 6 1.9658 -9.7212 0.0034 28 1 -0.4850 0.8399 -0.0004 29 1 0.3533 -2.3907 0.0005 30 1 0.6209 -4.9186 0.8995 31 1 0.6134 -4.9228 -0.8804 32 1 3.1495 -5.7993 0.0017 33 1 2.9744 -8.4782 -2.1342 34 1 4.0873 -7.3564 -1.3091 35 1 5.9751 -11.5044 -1.5784 36 1 5.2828 -13.8005 -1.0388 37 1 1.5671 -12.3283 0.4534 38 1 1.5083 -9.8824 0.9795 39 1 1.1884 -9.6903 -0.7600 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000376237210.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:29 Heat of formation + Delta-G solvation = -159.434048 kcal Electronic energy + Delta-G solvation = -25734.006806 eV Core-core repulsion = 21554.998144 eV Total energy + Delta-G solvation = -4179.008661 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.116 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -49.84292 -42.08743 -40.83883 -39.88647 -38.32935 -36.28578 -35.38580 -35.33613 -33.38099 -32.09761 -30.95288 -29.34246 -26.91120 -26.53270 -25.21850 -23.84324 -22.21897 -21.40659 -20.86352 -20.06408 -19.01476 -18.95178 -18.13603 -17.95209 -17.25685 -16.95992 -16.82303 -16.62633 -16.37363 -16.12626 -15.85523 -15.77733 -15.39300 -15.26019 -14.85862 -14.53414 -14.27361 -14.21555 -14.02595 -13.89924 -13.59317 -13.55334 -13.51826 -12.91848 -12.44653 -12.37021 -12.17974 -12.11455 -11.88597 -11.74429 -11.58045 -11.05098 -10.56252 -10.26257 -10.08959 -9.98787 -9.12975 -8.51616 -6.01474 0.09835 0.14992 1.34754 1.42729 1.43332 1.56784 1.87720 1.90762 2.15837 2.30554 2.51807 3.10301 3.15868 3.19923 3.35371 3.47267 3.56712 3.73249 3.81346 4.05661 4.08145 4.22633 4.29906 4.37980 4.42513 4.43838 4.46109 4.59378 4.81635 4.82658 4.96467 5.09001 5.13791 5.19887 5.25094 5.38674 5.66898 5.91587 6.28193 6.40195 6.48906 7.03157 7.05548 7.44309 7.94153 8.65370 Molecular weight = 322.12amu Principal moments of inertia in cm(-1) A = 0.040060 B = 0.002048 C = 0.001964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 698.775520 B =13667.627192 C =14252.495281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.012 4.012 3 Si 0.996 3.004 4 H -0.269 1.269 5 H -0.272 1.272 6 H -0.272 1.272 7 C -0.335 4.335 8 H 0.087 0.913 9 N -0.560 5.560 10 C 0.432 3.568 11 O -0.623 6.623 12 C 0.120 3.880 13 N -0.704 5.704 14 C 0.527 3.473 15 O -0.568 6.568 16 C -0.136 4.136 17 H 0.128 0.872 18 C 0.071 3.929 19 O -0.310 6.310 20 C 0.105 3.895 21 C -0.118 4.118 22 C -0.116 4.116 23 C 0.052 3.948 24 F -0.148 7.148 25 C -0.121 4.121 26 C -0.132 4.132 27 C -0.057 4.057 28 H 0.279 0.721 29 H 0.399 0.601 30 H 0.095 0.905 31 H 0.098 0.902 32 H 0.415 0.585 33 H 0.078 0.922 34 H 0.128 0.872 35 H 0.160 0.840 36 H 0.165 0.835 37 H 0.149 0.851 38 H 0.096 0.904 39 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.174 -22.723 -1.759 23.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.212 4.212 3 Si 0.819 3.181 4 H -0.194 1.194 5 H -0.197 1.197 6 H -0.198 1.198 7 C -0.464 4.464 8 H 0.105 0.895 9 N -0.196 5.196 10 C 0.220 3.780 11 O -0.511 6.511 12 C -0.008 4.008 13 N -0.358 5.358 14 C 0.314 3.686 15 O -0.448 6.448 16 C -0.157 4.157 17 H 0.145 0.855 18 C -0.004 4.004 19 O -0.224 6.224 20 C 0.060 3.940 21 C -0.137 4.137 22 C -0.134 4.134 23 C 0.033 3.967 24 F -0.127 7.127 25 C -0.140 4.140 26 C -0.133 4.133 27 C -0.094 4.094 28 H 0.089 0.911 29 H 0.233 0.767 30 H 0.113 0.887 31 H 0.116 0.884 32 H 0.254 0.746 33 H 0.096 0.904 34 H 0.146 0.854 35 H 0.178 0.822 36 H 0.183 0.817 37 H 0.166 0.834 38 H 0.115 0.885 39 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 6.152 -22.660 -1.784 23.548 hybrid contribution -0.361 0.930 0.230 1.024 sum 5.790 -21.730 -1.555 22.542 Atomic orbital electron populations 1.69677 1.06975 1.29549 1.49415 1.26120 0.96533 1.02689 0.95886 0.84822 0.78181 0.76821 0.78237 1.19382 1.19714 1.19773 1.19763 0.92961 0.83526 1.50174 0.89512 1.41865 1.09618 1.04668 1.63432 1.20445 0.88146 0.85933 0.83522 1.90482 1.15115 1.87529 1.57978 1.20810 0.91687 0.83783 1.04489 1.45747 1.11558 1.04507 1.73986 1.20477 0.89234 0.83486 0.75421 1.90707 1.17899 1.85014 1.51150 1.21936 0.97543 0.93402 1.02814 0.85452 1.23063 0.90394 0.91082 0.95855 1.86066 1.36029 1.14980 1.85298 1.19014 0.93422 0.85219 0.96361 1.20699 1.01385 0.89204 1.02378 1.21188 0.95113 0.98174 0.98964 1.17695 0.95713 0.79067 1.04262 1.91479 1.91626 1.37925 1.91621 1.20997 1.00890 0.90569 1.01501 1.19665 0.95546 0.95176 1.02951 1.20288 0.95926 0.88497 1.04700 0.91108 0.76704 0.88665 0.88429 0.74594 0.90355 0.85411 0.82209 0.81749 0.83366 0.88543 0.89336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -47.68 13.05 21.66 0.28 -47.40 16 2 C -0.01 -0.59 5.50 84.93 0.47 -0.13 16 3 Si 1.00 40.93 29.55 68.60 2.03 42.95 16 4 H -0.27 -11.07 7.11 99.48 0.71 -10.37 16 5 H -0.27 -10.76 7.11 99.48 0.71 -10.06 16 6 H -0.27 -10.81 7.11 99.48 0.71 -10.10 16 7 C -0.33 -17.93 9.68 84.04 0.81 -17.12 16 8 H 0.09 4.90 7.16 -2.91 -0.02 4.88 16 9 N -0.56 -27.04 5.29 -306.97 -1.62 -28.66 16 10 C 0.43 18.78 7.85 87.65 0.69 19.47 16 11 O -0.62 -30.42 15.24 -3.06 -0.05 -30.47 16 12 C 0.12 3.97 6.15 85.63 0.53 4.49 16 13 N -0.70 -19.92 5.41 -466.79 -2.52 -22.45 16 14 C 0.53 13.70 7.16 87.66 0.63 14.33 16 15 O -0.57 -18.26 15.79 -3.05 -0.05 -18.30 16 16 C -0.14 -2.62 2.76 -11.38 -0.03 -2.65 16 17 H 0.13 2.19 8.14 -2.39 -0.02 2.17 16 18 C 0.07 1.27 6.26 72.12 0.45 1.72 16 19 O -0.31 -5.97 10.27 -92.50 -0.95 -6.92 16 20 C 0.10 1.94 6.47 22.51 0.15 2.09 16 21 C -0.12 -1.77 9.93 22.42 0.22 -1.55 16 22 C -0.12 -1.63 10.02 22.26 0.22 -1.41 16 23 C 0.05 0.90 7.30 22.34 0.16 1.06 16 24 F -0.15 -2.81 17.27 44.97 0.78 -2.03 16 25 C -0.12 -2.09 9.64 22.35 0.22 -1.88 16 26 C -0.13 -2.42 5.75 -19.75 -0.11 -2.54 16 27 C -0.06 -1.07 4.66 29.89 0.14 -0.93 16 28 H 0.28 13.60 8.31 -92.72 -0.77 12.83 16 29 H 0.40 18.50 7.90 -92.70 -0.73 17.77 16 30 H 0.10 3.01 8.14 -2.39 -0.02 2.99 16 31 H 0.10 3.04 8.14 -2.39 -0.02 3.02 16 32 H 0.42 11.46 6.87 -92.71 -0.64 10.82 16 33 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 34 H 0.13 2.06 7.53 -2.39 -0.02 2.05 16 35 H 0.16 1.76 8.06 -2.91 -0.02 1.73 16 36 H 0.16 1.46 8.06 -2.91 -0.02 1.43 16 37 H 0.15 2.17 8.06 -2.91 -0.02 2.15 16 38 H 0.10 1.73 8.14 -2.38 -0.02 1.71 16 39 H 0.09 1.81 7.70 -2.39 -0.02 1.79 16 Total: -1.00 -64.34 342.67 2.19 -62.15 By element: Atomic # 1 Polarization: 36.39 SS G_CDS: -0.24 Total: 36.15 kcal Atomic # 6 Polarization: 10.43 SS G_CDS: 4.54 Total: 14.97 kcal Atomic # 7 Polarization: -94.64 SS G_CDS: -3.86 Total: -98.51 kcal Atomic # 8 Polarization: -54.64 SS G_CDS: -1.05 Total: -55.69 kcal Atomic # 9 Polarization: -2.81 SS G_CDS: 0.78 Total: -2.03 kcal Atomic # 14 Polarization: 40.93 SS G_CDS: 2.03 Total: 42.95 kcal Total: -64.34 2.19 -62.15 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000376237210.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.282 kcal (2) G-P(sol) polarization free energy of solvation -64.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds