Wall clock time and date at job start Fri Apr 10 2020 18:26:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86803 * 120.00012 * 2 1 4 4 H 1.48494 * 109.47452 * 240.00136 * 3 2 1 5 5 H 1.48505 * 109.46988 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.47061 * 119.99708 * 3 2 1 7 7 C 1.38953 * 120.00268 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99955 * 180.02562 * 7 2 1 9 9 N 1.37091 * 119.99712 * 0.02562 * 7 2 1 10 10 C 1.34777 * 120.00108 * 179.97438 * 9 7 2 11 11 O 1.21286 * 119.99822 * 0.02562 * 10 9 7 12 12 C 1.50703 * 120.00161 * 180.02562 * 10 9 7 13 13 N 1.46505 * 109.47064 * 180.02562 * 12 10 9 14 14 C 1.34771 * 119.99622 * 179.97438 * 13 12 10 15 15 O 1.21280 * 120.00597 * 0.02562 * 14 13 12 16 16 C 1.50701 * 119.99622 * 179.97438 * 14 13 12 17 17 H 1.08996 * 109.70228 * 299.43616 * 16 14 13 18 18 C 1.53409 * 109.70079 * 60.00561 * 16 14 13 19 19 O 1.42825 * 108.38270 * 184.43711 * 18 16 14 20 20 C 1.35901 * 117.86983 * 310.90081 * 19 18 16 21 21 C 1.39134 * 118.46907 * 196.99454 * 20 19 18 22 22 C 1.37970 * 120.25121 * 180.18174 * 21 20 19 23 23 C 1.38478 * 119.93090 * 0.02571 * 22 21 20 24 24 F 1.35104 * 120.03307 * 179.88739 * 23 22 21 25 25 C 1.38288 * 119.92794 * 359.90950 * 23 22 21 26 26 C 1.38348 * 121.79871 * 17.05172 * 20 19 18 27 27 C 1.50773 * 121.41153 * 359.64920 * 26 20 19 28 28 H 0.96996 * 119.99832 * 359.97438 * 1 2 3 29 29 H 0.97005 * 120.00430 * 0.02562 * 9 7 2 30 30 H 1.09002 * 109.47152 * 60.00245 * 12 10 9 31 31 H 1.09001 * 109.46980 * 300.00345 * 12 10 9 32 32 H 0.96996 * 119.99606 * 0.02562 * 13 12 10 33 33 H 1.09002 * 109.68394 * 304.15277 * 18 16 14 34 34 H 1.08996 * 109.68407 * 64.71374 * 18 16 14 35 35 H 1.07999 * 119.87161 * 0.19803 * 21 20 19 36 36 H 1.08001 * 120.03253 * 179.97438 * 22 21 20 37 37 H 1.08003 * 119.84957 * 180.02562 * 25 23 22 38 38 H 1.08996 * 109.43828 * 257.73699 * 27 26 20 39 39 H 1.09003 * 109.44194 * 137.86096 * 27 26 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.1018 1.6965 -1.2124 5 1 1.2831 2.7465 0.0006 6 1 3.1018 1.6964 1.2126 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0010 9 7 1.3235 -2.3906 0.0005 10 6 1.9973 -3.5578 0.0005 11 8 3.2102 -3.5578 0.0010 12 6 1.2438 -4.8629 0.0000 13 7 2.1959 -5.9765 0.0007 14 6 1.7466 -7.2471 0.0009 15 8 0.5542 -7.4687 -0.0001 16 6 2.7259 -8.3925 0.0010 17 1 3.3480 -8.3442 -0.8926 18 6 3.6107 -8.3162 1.2519 19 8 4.5932 -9.3498 1.1724 20 6 4.1699 -10.6074 0.8787 21 6 5.0238 -11.6734 1.1440 22 6 4.6330 -12.9651 0.8568 23 6 3.3866 -13.2027 0.3021 24 9 3.0027 -14.4665 0.0180 25 6 2.5356 -12.1450 0.0388 26 6 2.9239 -10.8471 0.3274 27 6 1.9661 -9.7211 0.0307 28 1 -0.4850 0.8400 0.0004 29 1 0.3534 -2.3906 -0.0002 30 1 0.6175 -4.9205 -0.8903 31 1 0.6168 -4.9208 0.8897 32 1 3.1495 -5.7991 0.0018 33 1 4.1029 -7.3446 1.2948 34 1 2.9996 -8.4584 2.1431 35 1 5.9961 -11.4891 1.5765 36 1 5.2987 -13.7899 1.0638 37 1 1.5636 -12.3318 -0.3935 38 1 1.1996 -9.6834 0.8047 39 1 1.4950 -9.8911 -0.9375 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000376237211.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:31 Heat of formation + Delta-G solvation = -138.870245 kcal Electronic energy + Delta-G solvation = -25734.267530 eV Core-core repulsion = 21556.150582 eV Total energy + Delta-G solvation = -4178.116948 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.116 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -49.10209 -41.25678 -39.63136 -38.24578 -37.58659 -34.67122 -34.47021 -33.81741 -31.51140 -31.24687 -30.24552 -27.91614 -26.03827 -25.05111 -24.07627 -23.14869 -21.26287 -19.99288 -19.58742 -18.29517 -18.23649 -17.86230 -17.33832 -16.98286 -15.91818 -15.79464 -15.64989 -15.53483 -15.21664 -14.79886 -14.79128 -14.55227 -14.30237 -13.92377 -13.71200 -13.60252 -13.51666 -13.32031 -13.15537 -12.78298 -12.29784 -12.04215 -11.69125 -11.60542 -11.44384 -11.15330 -11.13647 -10.95706 -10.55326 -10.37215 -9.91016 -9.68978 -9.31428 -8.98619 -8.72146 -8.39905 -8.17033 -6.57473 -3.99857 0.77596 0.85887 2.52311 2.83964 3.08314 3.09366 3.18172 3.21407 3.25430 3.66043 3.92772 4.05544 4.18055 4.25177 4.30456 4.47038 4.63951 4.75078 4.77586 4.89665 4.97983 5.10641 5.15040 5.19830 5.28901 5.48198 5.58537 5.72293 5.76394 5.79431 5.81496 5.84597 5.95537 5.97860 6.35040 6.48400 7.01898 7.40100 7.58259 7.84653 8.20604 8.37888 8.98036 9.31850 9.79247 10.59105 Molecular weight = 322.12amu Principal moments of inertia in cm(-1) A = 0.040043 B = 0.002049 C = 0.001965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 699.082140 B =13660.193904 C =14249.425960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.026 3.974 3 Si 0.935 3.065 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.272 1.272 7 C -0.307 4.307 8 H 0.106 0.894 9 N -0.547 5.547 10 C 0.425 3.575 11 O -0.598 6.598 12 C 0.108 3.892 13 N -0.704 5.704 14 C 0.520 3.480 15 O -0.541 6.541 16 C -0.146 4.146 17 H 0.115 0.885 18 C 0.070 3.930 19 O -0.305 6.305 20 C 0.121 3.879 21 C -0.118 4.118 22 C -0.123 4.123 23 C 0.065 3.935 24 F -0.142 7.142 25 C -0.116 4.116 26 C -0.126 4.126 27 C -0.061 4.061 28 H 0.275 0.725 29 H 0.396 0.604 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.412 0.588 33 H 0.120 0.880 34 H 0.075 0.925 35 H 0.142 0.858 36 H 0.141 0.859 37 H 0.139 0.861 38 H 0.096 0.904 39 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.414 -21.933 1.651 22.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.177 4.177 3 Si 0.761 3.239 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.197 1.197 7 C -0.436 4.436 8 H 0.123 0.877 9 N -0.181 5.181 10 C 0.211 3.789 11 O -0.485 6.485 12 C -0.020 4.020 13 N -0.358 5.358 14 C 0.305 3.695 15 O -0.418 6.418 16 C -0.168 4.168 17 H 0.133 0.867 18 C -0.005 4.005 19 O -0.218 6.218 20 C 0.075 3.925 21 C -0.137 4.137 22 C -0.141 4.141 23 C 0.046 3.954 24 F -0.120 7.120 25 C -0.135 4.135 26 C -0.127 4.127 27 C -0.098 4.098 28 H 0.085 0.915 29 H 0.230 0.770 30 H 0.103 0.897 31 H 0.103 0.897 32 H 0.250 0.750 33 H 0.138 0.862 34 H 0.094 0.906 35 H 0.160 0.840 36 H 0.159 0.841 37 H 0.157 0.843 38 H 0.114 0.886 39 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 5.383 -21.840 1.678 22.556 hybrid contribution -0.124 0.807 -0.185 0.837 sum 5.259 -21.032 1.493 21.731 Atomic orbital electron populations 1.69601 1.06030 1.28742 1.48963 1.25343 0.95683 1.00007 0.96645 0.85859 0.78786 0.80055 0.79199 1.19734 1.20825 1.19731 1.19683 0.93456 0.81963 1.48521 0.87668 1.41793 1.09503 1.04492 1.62332 1.19702 0.88295 0.84959 0.85943 1.90498 1.13657 1.86773 1.57560 1.20999 0.91828 0.85744 1.03420 1.45746 1.11800 1.04617 1.73611 1.20034 0.89160 0.83490 0.76810 1.90712 1.16437 1.84701 1.49964 1.21995 0.98119 0.94816 1.01820 0.86671 1.23041 0.90332 0.90717 0.96418 1.86073 1.35742 1.14508 1.85486 1.18757 0.92854 0.84960 0.95887 1.20446 1.00841 0.89537 1.02844 1.20917 0.95329 0.97518 1.00368 1.17490 0.94890 0.79210 1.03853 1.91495 1.91443 1.37338 1.91772 1.20869 1.00354 0.90715 1.01593 1.19704 0.95386 0.95143 1.02488 1.20346 0.96010 0.88660 1.04762 0.91459 0.77014 0.89676 0.89658 0.74981 0.86178 0.90627 0.84014 0.84122 0.84294 0.88566 0.88823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.32 13.05 55.50 0.72 -22.59 16 2 C 0.03 0.68 5.50 -17.47 -0.10 0.58 16 3 Si 0.93 20.09 29.55 -169.99 -5.02 15.06 16 4 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 5 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 6 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 7 C -0.31 -8.11 9.68 -14.94 -0.14 -8.25 16 8 H 0.11 2.89 7.16 -52.49 -0.38 2.51 16 9 N -0.55 -13.07 5.29 -10.97 -0.06 -13.13 16 10 C 0.43 9.26 7.85 -10.98 -0.09 9.17 16 11 O -0.60 -14.56 15.24 5.55 0.08 -14.48 16 12 C 0.11 1.83 6.15 -5.19 -0.03 1.80 16 13 N -0.70 -10.36 5.41 -61.47 -0.33 -10.69 16 14 C 0.52 7.07 7.16 -10.99 -0.08 6.99 16 15 O -0.54 -8.95 15.80 5.56 0.09 -8.86 16 16 C -0.15 -1.51 2.76 -91.52 -0.25 -1.76 16 17 H 0.12 1.09 8.14 -51.93 -0.42 0.67 16 18 C 0.07 0.67 6.25 37.37 0.23 0.91 16 19 O -0.30 -3.17 10.27 -19.43 -0.20 -3.37 16 20 C 0.12 1.21 6.47 -39.21 -0.25 0.96 16 21 C -0.12 -1.01 9.93 -39.35 -0.39 -1.40 16 22 C -0.12 -0.99 10.02 -39.59 -0.40 -1.39 16 23 C 0.06 0.61 7.30 -39.47 -0.29 0.32 16 24 F -0.14 -1.43 17.27 2.25 0.04 -1.39 16 25 C -0.12 -1.07 9.64 -39.46 -0.38 -1.46 16 26 C -0.13 -1.23 5.75 -104.44 -0.60 -1.83 16 27 C -0.06 -0.60 4.65 -27.81 -0.13 -0.73 16 28 H 0.28 6.81 8.31 -40.82 -0.34 6.48 16 29 H 0.40 9.10 7.90 -40.82 -0.32 8.78 16 30 H 0.09 1.40 8.14 -51.93 -0.42 0.97 16 31 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 32 H 0.41 5.90 6.83 -40.82 -0.28 5.62 16 33 H 0.12 1.06 7.49 -51.93 -0.39 0.67 16 34 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 35 H 0.14 0.96 8.06 -52.49 -0.42 0.54 16 36 H 0.14 0.82 8.06 -52.49 -0.42 0.40 16 37 H 0.14 1.08 8.06 -52.48 -0.42 0.66 16 38 H 0.10 1.01 7.71 -51.93 -0.40 0.61 16 39 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 342.62 15.07 5.16 5.16 Total: -1.00 -30.46 342.62 -6.69 -37.16 By element: Atomic # 1 Polarization: 17.51 SS G_CDS: -4.28 Total: 13.22 kcal Atomic # 6 Polarization: 6.80 SS G_CDS: -2.90 Total: 3.91 kcal Atomic # 7 Polarization: -46.74 SS G_CDS: 0.33 Total: -46.41 kcal Atomic # 8 Polarization: -26.68 SS G_CDS: -0.03 Total: -26.71 kcal Atomic # 9 Polarization: -1.43 SS G_CDS: 0.04 Total: -1.39 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -5.02 Total: 15.06 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -30.46 -6.69 -37.16 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000376237211.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.713 kcal (2) G-P(sol) polarization free energy of solvation -30.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.157 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds