Wall clock time and date at job start Fri Apr 10 2020 18:26:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86803 * 120.00012 * 2 1 4 4 H 1.48494 * 109.47452 * 240.00136 * 3 2 1 5 5 H 1.48505 * 109.46988 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.47061 * 119.99708 * 3 2 1 7 7 C 1.38953 * 120.00268 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99955 * 180.02562 * 7 2 1 9 9 N 1.37091 * 119.99712 * 0.02562 * 7 2 1 10 10 C 1.34777 * 120.00108 * 179.97438 * 9 7 2 11 11 O 1.21286 * 119.99822 * 0.02562 * 10 9 7 12 12 C 1.50703 * 120.00161 * 180.02562 * 10 9 7 13 13 N 1.46505 * 109.47064 * 180.02562 * 12 10 9 14 14 C 1.34771 * 119.99622 * 179.97438 * 13 12 10 15 15 O 1.21280 * 120.00597 * 0.02562 * 14 13 12 16 16 C 1.50701 * 119.99622 * 179.97438 * 14 13 12 17 17 H 1.08996 * 109.70228 * 299.43616 * 16 14 13 18 18 C 1.53409 * 109.70079 * 60.00561 * 16 14 13 19 19 O 1.42825 * 108.38270 * 184.43711 * 18 16 14 20 20 C 1.35901 * 117.86983 * 310.90081 * 19 18 16 21 21 C 1.39134 * 118.46907 * 196.99454 * 20 19 18 22 22 C 1.37970 * 120.25121 * 180.18174 * 21 20 19 23 23 C 1.38478 * 119.93090 * 0.02571 * 22 21 20 24 24 F 1.35104 * 120.03307 * 179.88739 * 23 22 21 25 25 C 1.38288 * 119.92794 * 359.90950 * 23 22 21 26 26 C 1.38348 * 121.79871 * 17.05172 * 20 19 18 27 27 C 1.50773 * 121.41153 * 359.64920 * 26 20 19 28 28 H 0.96996 * 119.99832 * 359.97438 * 1 2 3 29 29 H 0.97005 * 120.00430 * 0.02562 * 9 7 2 30 30 H 1.09002 * 109.47152 * 60.00245 * 12 10 9 31 31 H 1.09001 * 109.46980 * 300.00345 * 12 10 9 32 32 H 0.96996 * 119.99606 * 0.02562 * 13 12 10 33 33 H 1.09002 * 109.68394 * 304.15277 * 18 16 14 34 34 H 1.08996 * 109.68407 * 64.71374 * 18 16 14 35 35 H 1.07999 * 119.87161 * 0.19803 * 21 20 19 36 36 H 1.08001 * 120.03253 * 179.97438 * 22 21 20 37 37 H 1.08003 * 119.84957 * 180.02562 * 25 23 22 38 38 H 1.08996 * 109.43828 * 257.73699 * 27 26 20 39 39 H 1.09003 * 109.44194 * 137.86096 * 27 26 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.1018 1.6965 -1.2124 5 1 1.2831 2.7465 0.0006 6 1 3.1018 1.6964 1.2126 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0010 9 7 1.3235 -2.3906 0.0005 10 6 1.9973 -3.5578 0.0005 11 8 3.2102 -3.5578 0.0010 12 6 1.2438 -4.8629 0.0000 13 7 2.1959 -5.9765 0.0007 14 6 1.7466 -7.2471 0.0009 15 8 0.5542 -7.4687 -0.0001 16 6 2.7259 -8.3925 0.0010 17 1 3.3480 -8.3442 -0.8926 18 6 3.6107 -8.3162 1.2519 19 8 4.5932 -9.3498 1.1724 20 6 4.1699 -10.6074 0.8787 21 6 5.0238 -11.6734 1.1440 22 6 4.6330 -12.9651 0.8568 23 6 3.3866 -13.2027 0.3021 24 9 3.0027 -14.4665 0.0180 25 6 2.5356 -12.1450 0.0388 26 6 2.9239 -10.8471 0.3274 27 6 1.9661 -9.7211 0.0307 28 1 -0.4850 0.8400 0.0004 29 1 0.3534 -2.3906 -0.0002 30 1 0.6175 -4.9205 -0.8903 31 1 0.6168 -4.9208 0.8897 32 1 3.1495 -5.7991 0.0018 33 1 4.1029 -7.3446 1.2948 34 1 2.9996 -8.4584 2.1431 35 1 5.9961 -11.4891 1.5765 36 1 5.2987 -13.7899 1.0638 37 1 1.5636 -12.3318 -0.3935 38 1 1.1996 -9.6834 0.8047 39 1 1.4950 -9.8911 -0.9375 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000376237211.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:31 Heat of formation + Delta-G solvation = -159.234459 kcal Electronic energy + Delta-G solvation = -25735.150588 eV Core-core repulsion = 21556.150582 eV Total energy + Delta-G solvation = -4179.000006 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.116 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -49.84172 -42.08798 -40.83871 -39.88546 -38.32912 -36.28406 -35.38456 -35.33854 -33.37937 -32.09760 -30.95236 -29.33965 -26.90876 -26.52823 -25.21857 -23.84374 -22.21973 -21.40460 -20.86404 -20.06175 -19.01342 -18.95138 -18.13649 -17.95090 -17.25184 -16.95861 -16.82147 -16.62547 -16.37087 -16.12409 -15.85774 -15.78227 -15.39352 -15.25817 -14.85512 -14.53516 -14.27385 -14.21586 -14.02380 -13.89633 -13.59363 -13.53888 -13.51611 -12.89758 -12.46880 -12.37286 -12.17940 -12.14040 -11.88593 -11.74487 -11.55931 -11.05088 -10.56029 -10.26234 -10.08896 -9.98817 -9.12966 -8.51045 -6.01117 0.09851 0.14984 1.37838 1.43016 1.43314 1.53695 1.87841 1.91319 2.15814 2.30786 2.51798 3.10504 3.16312 3.19873 3.35245 3.47231 3.56729 3.73270 3.81336 4.05597 4.08136 4.22773 4.29888 4.37963 4.42571 4.43876 4.46072 4.59381 4.81640 4.82664 4.96454 5.09004 5.13790 5.19863 5.25099 5.38407 5.66876 5.91532 6.28180 6.40293 6.49160 7.03179 7.05539 7.44485 7.94372 8.65399 Molecular weight = 322.12amu Principal moments of inertia in cm(-1) A = 0.040043 B = 0.002049 C = 0.001965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 699.082140 B =13660.193904 C =14249.425960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.011 4.011 3 Si 0.996 3.004 4 H -0.270 1.270 5 H -0.273 1.273 6 H -0.270 1.270 7 C -0.337 4.337 8 H 0.087 0.913 9 N -0.560 5.560 10 C 0.432 3.568 11 O -0.623 6.623 12 C 0.120 3.880 13 N -0.704 5.704 14 C 0.527 3.473 15 O -0.568 6.568 16 C -0.136 4.136 17 H 0.128 0.872 18 C 0.071 3.929 19 O -0.310 6.310 20 C 0.105 3.895 21 C -0.118 4.118 22 C -0.116 4.116 23 C 0.052 3.948 24 F -0.148 7.148 25 C -0.121 4.121 26 C -0.132 4.132 27 C -0.057 4.057 28 H 0.280 0.720 29 H 0.399 0.601 30 H 0.095 0.905 31 H 0.098 0.902 32 H 0.415 0.585 33 H 0.128 0.872 34 H 0.078 0.922 35 H 0.160 0.840 36 H 0.165 0.835 37 H 0.149 0.851 38 H 0.088 0.912 39 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.195 -22.680 1.790 23.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.212 4.212 3 Si 0.819 3.181 4 H -0.195 1.195 5 H -0.198 1.198 6 H -0.195 1.195 7 C -0.466 4.466 8 H 0.105 0.895 9 N -0.195 5.195 10 C 0.219 3.781 11 O -0.511 6.511 12 C -0.008 4.008 13 N -0.358 5.358 14 C 0.314 3.686 15 O -0.448 6.448 16 C -0.157 4.157 17 H 0.146 0.854 18 C -0.004 4.004 19 O -0.224 6.224 20 C 0.060 3.940 21 C -0.137 4.137 22 C -0.134 4.134 23 C 0.033 3.967 24 F -0.127 7.127 25 C -0.139 4.139 26 C -0.134 4.134 27 C -0.094 4.094 28 H 0.089 0.911 29 H 0.233 0.767 30 H 0.113 0.887 31 H 0.115 0.885 32 H 0.254 0.746 33 H 0.146 0.854 34 H 0.097 0.903 35 H 0.178 0.822 36 H 0.183 0.817 37 H 0.166 0.834 38 H 0.107 0.893 39 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 6.164 -22.613 1.817 23.508 hybrid contribution -0.346 0.921 -0.225 1.010 sum 5.817 -21.692 1.592 22.514 Atomic orbital electron populations 1.69668 1.06976 1.29676 1.49249 1.26120 0.96533 1.02690 0.95839 0.84941 0.77719 0.76316 0.79107 1.19515 1.19777 1.19466 1.19692 0.92981 0.83542 1.50400 0.89491 1.41852 1.09612 1.04658 1.63405 1.20439 0.88152 0.85928 0.83572 1.90478 1.15107 1.87524 1.58008 1.20811 0.91687 0.83795 1.04479 1.45746 1.11555 1.04507 1.73991 1.20476 0.89234 0.83485 0.75420 1.90705 1.17902 1.85008 1.51149 1.21941 0.97464 0.93405 1.02882 0.85433 1.23068 0.90302 0.91047 0.95998 1.86069 1.35893 1.14751 1.85657 1.19013 0.93349 0.85178 0.96470 1.20698 1.01361 0.89223 1.02389 1.21188 0.95046 0.98127 0.99076 1.17695 0.95589 0.78989 1.04469 1.91480 1.91578 1.37686 1.91908 1.20998 1.00890 0.90570 1.01491 1.19666 0.95416 0.95153 1.03118 1.20291 0.95869 0.88540 1.04700 0.91096 0.76705 0.88664 0.88453 0.74595 0.85431 0.90340 0.82212 0.81749 0.83364 0.89345 0.88542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -47.67 13.05 21.66 0.28 -47.39 16 2 C -0.01 -0.56 5.50 84.93 0.47 -0.10 16 3 Si 1.00 40.87 29.55 68.60 2.03 42.90 16 4 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 5 H -0.27 -10.68 7.11 99.48 0.71 -9.98 16 6 H -0.27 -10.88 7.11 99.48 0.71 -10.17 16 7 C -0.34 -18.02 9.68 84.04 0.81 -17.21 16 8 H 0.09 4.88 7.16 -2.91 -0.02 4.86 16 9 N -0.56 -27.02 5.29 -306.99 -1.62 -28.64 16 10 C 0.43 18.76 7.85 87.66 0.69 19.45 16 11 O -0.62 -30.40 15.24 -3.05 -0.05 -30.44 16 12 C 0.12 3.97 6.15 85.63 0.53 4.50 16 13 N -0.70 -19.94 5.41 -466.78 -2.52 -22.46 16 14 C 0.53 13.71 7.16 87.66 0.63 14.34 16 15 O -0.57 -18.27 15.80 -3.03 -0.05 -18.32 16 16 C -0.14 -2.62 2.76 -11.38 -0.03 -2.65 16 17 H 0.13 2.19 8.14 -2.39 -0.02 2.17 16 18 C 0.07 1.27 6.25 72.12 0.45 1.72 16 19 O -0.31 -5.97 10.27 -92.43 -0.95 -6.92 16 20 C 0.11 1.95 6.47 22.51 0.15 2.09 16 21 C -0.12 -1.78 9.93 22.42 0.22 -1.55 16 22 C -0.12 -1.63 10.02 22.26 0.22 -1.41 16 23 C 0.05 0.90 7.30 22.34 0.16 1.06 16 24 F -0.15 -2.81 17.27 44.97 0.78 -2.03 16 25 C -0.12 -2.09 9.64 22.35 0.22 -1.88 16 26 C -0.13 -2.43 5.75 -19.75 -0.11 -2.54 16 27 C -0.06 -1.07 4.65 29.90 0.14 -0.93 16 28 H 0.28 13.69 8.31 -92.71 -0.77 12.92 16 29 H 0.40 18.51 7.90 -92.70 -0.73 17.77 16 30 H 0.10 3.02 8.14 -2.39 -0.02 3.00 16 31 H 0.10 3.04 8.14 -2.39 -0.02 3.02 16 32 H 0.42 11.46 6.83 -92.71 -0.63 10.83 16 33 H 0.13 2.06 7.49 -2.39 -0.02 2.05 16 34 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 35 H 0.16 1.76 8.06 -2.91 -0.02 1.73 16 36 H 0.16 1.46 8.06 -2.91 -0.02 1.44 16 37 H 0.15 2.17 8.06 -2.91 -0.02 2.15 16 38 H 0.09 1.80 7.71 -2.39 -0.02 1.78 16 39 H 0.10 1.73 8.14 -2.39 -0.02 1.72 16 Total: -1.00 -64.20 342.62 2.20 -62.00 By element: Atomic # 1 Polarization: 36.64 SS G_CDS: -0.24 Total: 36.41 kcal Atomic # 6 Polarization: 10.36 SS G_CDS: 4.54 Total: 14.90 kcal Atomic # 7 Polarization: -94.63 SS G_CDS: -3.86 Total: -98.49 kcal Atomic # 8 Polarization: -54.63 SS G_CDS: -1.04 Total: -55.68 kcal Atomic # 9 Polarization: -2.81 SS G_CDS: 0.78 Total: -2.03 kcal Atomic # 14 Polarization: 40.87 SS G_CDS: 2.03 Total: 42.90 kcal Total: -64.20 2.20 -62.00 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000376237211.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.234 kcal (2) G-P(sol) polarization free energy of solvation -64.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds