Wall clock time and date at job start Fri Apr 10 2020 18:26:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99579 * 2 1 4 4 H 1.48494 * 109.47225 * 0.02562 * 3 2 1 5 5 H 1.48506 * 109.46866 * 120.00450 * 3 2 1 6 6 H 1.48498 * 109.47306 * 239.99734 * 3 2 1 7 7 C 1.37871 * 120.00481 * 179.73118 * 2 1 3 8 8 H 1.08002 * 120.00484 * 179.97438 * 7 2 1 9 9 S 1.76204 * 120.00023 * 359.97438 * 7 2 1 10 10 O 1.42097 * 106.40184 * 293.54281 * 9 7 2 11 11 O 1.42097 * 106.40177 * 66.45802 * 9 7 2 12 12 N 1.65595 * 107.22033 * 180.02562 * 9 7 2 13 13 C 1.46504 * 119.99792 * 65.00456 * 12 9 7 14 14 H 1.09001 * 115.51740 * 359.57363 * 13 12 9 15 15 C 1.53001 * 117.43946 * 214.22948 * 13 12 9 16 16 H 1.09000 * 119.52846 * 4.08087 * 15 13 12 17 17 C 1.54381 * 118.13105 * 160.68514 * 15 13 12 18 18 N 1.48562 * 104.59555 * 87.22084 * 17 15 13 19 19 C 1.46903 * 110.99992 * 200.96272 * 18 17 15 20 20 C 1.50704 * 109.47137 * 285.42086 * 19 18 17 21 21 C 1.38230 * 119.99893 * 269.73086 * 20 19 18 22 22 C 1.38237 * 119.99407 * 179.76819 * 21 20 19 23 23 C 1.38229 * 120.00457 * 0.50323 * 22 21 20 24 24 C 1.38237 * 119.99790 * 359.74682 * 23 22 21 25 25 C 1.38235 * 119.99526 * 89.99819 * 20 19 18 26 26 C 1.48559 * 104.22454 * 320.52047 * 18 17 15 27 27 C 1.52993 * 117.44590 * 145.00069 * 13 12 9 28 28 H 1.09007 * 119.52740 * 354.34832 * 27 13 12 29 29 H 0.97005 * 119.99656 * 179.97438 * 1 2 3 30 30 H 0.96996 * 120.00508 * 244.99536 * 12 9 7 31 31 H 1.09005 * 110.40905 * 328.44907 * 17 15 13 32 32 H 1.08997 * 110.41347 * 206.00655 * 17 15 13 33 33 H 1.08999 * 109.47214 * 45.41946 * 19 18 17 34 34 H 1.08996 * 109.46915 * 165.42446 * 19 18 17 35 35 H 1.07992 * 120.00367 * 359.97438 * 21 20 19 36 36 H 1.08004 * 119.99870 * 180.22969 * 22 21 20 37 37 H 1.08005 * 120.00754 * 179.72876 * 23 22 21 38 38 H 1.08005 * 120.00263 * 179.97438 * 24 23 22 39 39 H 1.07998 * 120.00305 * 0.02562 * 25 20 19 40 40 H 1.08996 * 110.41266 * 280.70280 * 26 18 17 41 41 H 1.08997 * 110.51242 * 158.30640 * 26 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 1.2840 2.7465 0.0006 5 1 3.1029 1.6965 1.2125 6 1 3.1028 1.6966 -1.2124 7 6 2.0046 -1.1939 0.0056 8 1 3.0846 -1.1939 0.0052 9 16 1.1237 -2.7200 0.0134 10 8 0.4520 -2.7891 1.2637 11 8 0.4511 -2.8014 -1.2356 12 7 2.2485 -3.9353 0.0197 13 6 3.1395 -4.1028 1.1705 14 1 3.0038 -3.3833 1.9781 15 6 4.5627 -4.5921 0.8950 16 1 4.8918 -4.7352 -0.1343 17 6 5.6376 -4.3507 1.9765 18 7 5.5317 -5.5264 2.8785 19 6 6.1102 -5.2325 4.1965 20 6 7.6138 -5.2274 4.0953 21 6 8.3247 -6.3940 4.3061 22 6 9.7036 -6.3902 4.2086 23 6 10.3723 -5.2176 3.9105 24 6 9.6617 -4.0499 3.7048 25 6 8.2824 -4.0547 3.7972 26 6 4.0710 -5.7767 2.9820 27 6 3.5322 -5.5302 1.5564 28 1 3.0749 -6.3723 1.0368 29 1 -0.4850 -0.8401 -0.0004 30 1 2.3174 -4.5363 -0.7385 31 1 5.4268 -3.4317 2.5235 32 1 6.6285 -4.3063 1.5245 33 1 5.7655 -4.2554 4.5349 34 1 5.7966 -5.9953 4.9091 35 1 7.8027 -7.3090 4.5437 36 1 10.2589 -7.3024 4.3696 37 1 11.4499 -5.2137 3.8386 38 1 10.1841 -3.1336 3.4723 39 1 7.7272 -3.1423 3.6371 40 1 3.6151 -5.0809 3.6863 41 1 3.8805 -6.8054 3.2878 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000398249991.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:34 Heat of formation + Delta-G solvation = -28.515315 kcal Electronic energy + Delta-G solvation = -24458.822064 eV Core-core repulsion = 20851.703641 eV Total energy + Delta-G solvation = -3607.118423 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 322.114 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.22559 -39.10898 -35.69403 -35.42908 -34.45298 -33.28596 -32.51071 -31.07672 -30.49210 -28.43221 -26.31994 -25.57576 -22.83743 -22.67910 -21.09210 -20.81703 -20.11770 -19.42516 -18.13428 -16.97271 -16.64875 -16.28762 -15.55725 -15.44717 -15.35441 -14.73668 -14.25682 -14.04888 -14.00755 -13.78306 -13.57316 -13.14262 -12.99537 -12.89845 -12.60238 -12.37884 -12.21028 -11.67840 -11.55852 -11.19740 -11.15402 -11.11844 -11.05035 -10.86700 -10.82497 -10.66649 -10.58155 -10.32901 -9.88962 -9.22256 -9.08656 -8.95639 -8.84205 -8.53622 -8.31622 -7.22027 -5.44000 1.15381 1.23809 2.01682 3.20427 3.21412 3.42735 3.50563 3.75945 3.97999 4.10936 4.27346 4.54682 4.64764 4.67607 4.71739 4.81719 4.84085 4.94323 4.98632 5.08597 5.18809 5.29228 5.32934 5.40574 5.44588 5.46789 5.49106 5.59355 5.71101 5.81904 5.85858 5.86865 6.05193 6.20109 6.26306 6.27597 6.33252 6.42641 6.63186 6.66330 6.81120 6.89024 7.53302 7.64646 8.01283 8.57548 10.16030 Molecular weight = 322.11amu Principal moments of inertia in cm(-1) A = 0.016945 B = 0.003128 C = 0.002766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1652.034955 B = 8950.226930 C =10118.742562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.844 5.844 2 C 0.090 3.910 3 Si 1.080 2.920 4 H -0.271 1.271 5 H -0.276 1.276 6 H -0.275 1.275 7 C -1.083 5.083 8 H 0.104 0.896 9 S 2.691 3.309 10 O -1.009 7.009 11 O -1.009 7.009 12 N -1.096 6.096 13 C 0.145 3.855 14 H 0.132 0.868 15 C -0.175 4.175 16 H 0.118 0.882 17 C 0.064 3.936 18 N -0.505 5.505 19 C 0.079 3.921 20 C -0.072 4.072 21 C -0.100 4.100 22 C -0.123 4.123 23 C -0.124 4.124 24 C -0.121 4.121 25 C -0.112 4.112 26 C 0.062 3.938 27 C -0.179 4.179 28 H 0.118 0.882 29 H 0.276 0.724 30 H 0.405 0.595 31 H 0.051 0.949 32 H 0.086 0.914 33 H 0.050 0.950 34 H 0.084 0.916 35 H 0.121 0.879 36 H 0.119 0.881 37 H 0.119 0.881 38 H 0.120 0.880 39 H 0.120 0.880 40 H 0.052 0.948 41 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.142 -10.695 8.447 22.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.473 5.473 2 C -0.128 4.128 3 Si 0.903 3.097 4 H -0.196 1.196 5 H -0.201 1.201 6 H -0.201 1.201 7 C -1.218 5.218 8 H 0.122 0.878 9 S 2.792 3.208 10 O -0.998 6.998 11 O -0.999 6.999 12 N -0.845 5.845 13 C 0.034 3.966 14 H 0.150 0.850 15 C -0.196 4.196 16 H 0.136 0.864 17 C -0.064 4.064 18 N -0.228 5.228 19 C -0.049 4.049 20 C -0.072 4.072 21 C -0.119 4.119 22 C -0.141 4.141 23 C -0.142 4.142 24 C -0.139 4.139 25 C -0.131 4.131 26 C -0.065 4.065 27 C -0.200 4.200 28 H 0.136 0.864 29 H 0.088 0.912 30 H 0.237 0.763 31 H 0.069 0.931 32 H 0.105 0.895 33 H 0.068 0.932 34 H 0.102 0.898 35 H 0.139 0.861 36 H 0.137 0.863 37 H 0.137 0.863 38 H 0.138 0.862 39 H 0.138 0.862 40 H 0.070 0.930 41 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 17.193 -9.607 8.407 21.414 hybrid contribution 0.547 -1.087 -0.165 1.228 sum 17.741 -10.694 8.242 22.294 Atomic orbital electron populations 1.70859 1.07202 1.31991 1.37219 1.25975 0.95108 1.03940 0.87826 0.83445 0.75304 0.73319 0.77673 1.19607 1.20103 1.20064 1.31423 1.07996 1.12327 1.70046 0.87770 1.01053 0.72596 0.74128 0.72984 1.93428 1.73182 1.87654 1.45580 1.93441 1.73322 1.87776 1.45401 1.55373 1.53716 1.50082 1.25323 1.21271 0.89130 0.95839 0.90351 0.85013 1.23927 0.90153 1.05809 0.99750 0.86376 1.22645 0.98783 0.91769 0.93186 1.65596 1.12738 1.35076 1.09433 1.21229 0.90975 1.01023 0.91668 1.19712 0.94836 0.93503 0.99170 1.21010 0.93908 0.97545 0.99439 1.21135 0.94506 0.98074 1.00420 1.21140 0.99764 0.93048 1.00267 1.21133 0.94193 0.98250 1.00308 1.21119 0.94508 0.97867 0.99610 1.22606 0.87063 1.01843 0.95026 1.23871 1.04200 0.95466 0.96508 0.86393 0.91173 0.76336 0.93065 0.89530 0.93198 0.89776 0.86098 0.86254 0.86345 0.86151 0.86173 0.93022 0.89458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -25.51 13.66 55.43 0.76 -24.76 16 2 C 0.09 2.52 5.46 -17.82 -0.10 2.43 16 3 Si 1.08 23.57 29.90 -169.99 -5.08 18.49 16 4 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 5 H -0.28 -5.58 7.11 56.52 0.40 -5.18 16 6 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 7 C -1.08 -29.18 9.72 30.60 0.30 -28.89 16 8 H 0.10 2.58 7.81 -52.49 -0.41 2.17 16 9 S 2.69 68.55 4.36 -107.50 -0.47 68.08 16 10 O -1.01 -28.16 17.40 -57.18 -1.00 -29.15 16 11 O -1.01 -28.42 17.63 -57.18 -1.01 -29.42 16 12 N -1.10 -21.02 6.04 -4.89 -0.03 -21.05 16 13 C 0.14 2.44 6.01 -67.93 -0.41 2.03 16 14 H 0.13 2.35 8.11 -51.93 -0.42 1.93 16 15 C -0.17 -2.43 7.05 -89.24 -0.63 -3.06 16 16 H 0.12 1.58 8.14 -51.93 -0.42 1.15 16 17 C 0.06 0.79 5.51 -2.18 -0.01 0.78 16 18 N -0.50 -5.88 5.33 -231.40 -1.23 -7.11 16 19 C 0.08 0.79 4.98 -4.97 -0.02 0.77 16 20 C -0.07 -0.73 5.19 -104.62 -0.54 -1.27 16 21 C -0.10 -0.95 9.70 -39.58 -0.38 -1.34 16 22 C -0.12 -1.07 10.05 -39.58 -0.40 -1.47 16 23 C -0.12 -1.06 10.05 -39.58 -0.40 -1.46 16 24 C -0.12 -1.10 10.05 -39.58 -0.40 -1.50 16 25 C -0.11 -1.12 8.93 -39.58 -0.35 -1.47 16 26 C 0.06 0.74 6.26 -2.18 -0.01 0.73 16 27 C -0.18 -2.46 7.05 -89.24 -0.63 -3.09 16 28 H 0.12 1.52 8.14 -51.92 -0.42 1.10 16 29 H 0.28 8.57 6.52 -40.82 -0.27 8.30 16 30 H 0.41 6.72 8.96 -34.47 -0.31 6.41 16 31 H 0.05 0.64 7.75 -51.93 -0.40 0.24 16 32 H 0.09 1.04 7.89 -51.93 -0.41 0.63 16 33 H 0.05 0.50 7.71 -51.93 -0.40 0.10 16 34 H 0.08 0.75 8.02 -51.93 -0.42 0.33 16 35 H 0.12 1.00 8.06 -52.49 -0.42 0.57 16 36 H 0.12 0.79 8.06 -52.48 -0.42 0.36 16 37 H 0.12 0.77 8.06 -52.48 -0.42 0.35 16 38 H 0.12 0.88 8.06 -52.48 -0.42 0.46 16 39 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 40 H 0.05 0.62 8.00 -51.93 -0.42 0.21 16 41 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 357.13 15.07 5.38 5.38 Total: -1.00 -34.37 357.13 -12.30 -46.66 By element: Atomic # 1 Polarization: 15.32 SS G_CDS: -5.63 Total: 9.69 kcal Atomic # 6 Polarization: -32.82 SS G_CDS: -3.99 Total: -36.81 kcal Atomic # 7 Polarization: -52.41 SS G_CDS: -0.51 Total: -52.92 kcal Atomic # 8 Polarization: -56.57 SS G_CDS: -2.00 Total: -58.58 kcal Atomic # 14 Polarization: 23.57 SS G_CDS: -5.08 Total: 18.49 kcal Atomic # 16 Polarization: 68.55 SS G_CDS: -0.47 Total: 68.08 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -34.37 -12.30 -46.66 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000398249991.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.149 kcal (2) G-P(sol) polarization free energy of solvation -34.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds