Wall clock time and date at job start Fri Apr 10 2020 18:26:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99579 * 2 1 4 4 H 1.48494 * 109.47225 * 0.02562 * 3 2 1 5 5 H 1.48506 * 109.46866 * 120.00450 * 3 2 1 6 6 H 1.48498 * 109.47306 * 239.99734 * 3 2 1 7 7 C 1.37871 * 120.00481 * 179.73118 * 2 1 3 8 8 H 1.08002 * 120.00484 * 179.97438 * 7 2 1 9 9 S 1.76204 * 120.00023 * 359.97438 * 7 2 1 10 10 O 1.42097 * 106.40184 * 293.54281 * 9 7 2 11 11 O 1.42097 * 106.40177 * 66.45802 * 9 7 2 12 12 N 1.65595 * 107.22033 * 180.02562 * 9 7 2 13 13 C 1.46504 * 119.99792 * 65.00456 * 12 9 7 14 14 H 1.09001 * 115.51740 * 359.57363 * 13 12 9 15 15 C 1.53001 * 117.43946 * 214.22948 * 13 12 9 16 16 H 1.09000 * 119.52846 * 4.08087 * 15 13 12 17 17 C 1.54381 * 118.13105 * 160.68514 * 15 13 12 18 18 N 1.48562 * 104.59555 * 87.22084 * 17 15 13 19 19 C 1.46903 * 110.99992 * 200.96272 * 18 17 15 20 20 C 1.50704 * 109.47137 * 285.42086 * 19 18 17 21 21 C 1.38230 * 119.99893 * 269.73086 * 20 19 18 22 22 C 1.38237 * 119.99407 * 179.76819 * 21 20 19 23 23 C 1.38229 * 120.00457 * 0.50323 * 22 21 20 24 24 C 1.38237 * 119.99790 * 359.74682 * 23 22 21 25 25 C 1.38235 * 119.99526 * 89.99819 * 20 19 18 26 26 C 1.48559 * 104.22454 * 320.52047 * 18 17 15 27 27 C 1.52993 * 117.44590 * 145.00069 * 13 12 9 28 28 H 1.09007 * 119.52740 * 354.34832 * 27 13 12 29 29 H 0.97005 * 119.99656 * 179.97438 * 1 2 3 30 30 H 0.96996 * 120.00508 * 244.99536 * 12 9 7 31 31 H 1.09005 * 110.40905 * 328.44907 * 17 15 13 32 32 H 1.08997 * 110.41347 * 206.00655 * 17 15 13 33 33 H 1.08999 * 109.47214 * 45.41946 * 19 18 17 34 34 H 1.08996 * 109.46915 * 165.42446 * 19 18 17 35 35 H 1.07992 * 120.00367 * 359.97438 * 21 20 19 36 36 H 1.08004 * 119.99870 * 180.22969 * 22 21 20 37 37 H 1.08005 * 120.00754 * 179.72876 * 23 22 21 38 38 H 1.08005 * 120.00263 * 179.97438 * 24 23 22 39 39 H 1.07998 * 120.00305 * 0.02562 * 25 20 19 40 40 H 1.08996 * 110.41266 * 280.70280 * 26 18 17 41 41 H 1.08997 * 110.51242 * 158.30640 * 26 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 1.2840 2.7465 0.0006 5 1 3.1029 1.6965 1.2125 6 1 3.1028 1.6966 -1.2124 7 6 2.0046 -1.1939 0.0056 8 1 3.0846 -1.1939 0.0052 9 16 1.1237 -2.7200 0.0134 10 8 0.4520 -2.7891 1.2637 11 8 0.4511 -2.8014 -1.2356 12 7 2.2485 -3.9353 0.0197 13 6 3.1395 -4.1028 1.1705 14 1 3.0038 -3.3833 1.9781 15 6 4.5627 -4.5921 0.8950 16 1 4.8918 -4.7352 -0.1343 17 6 5.6376 -4.3507 1.9765 18 7 5.5317 -5.5264 2.8785 19 6 6.1102 -5.2325 4.1965 20 6 7.6138 -5.2274 4.0953 21 6 8.3247 -6.3940 4.3061 22 6 9.7036 -6.3902 4.2086 23 6 10.3723 -5.2176 3.9105 24 6 9.6617 -4.0499 3.7048 25 6 8.2824 -4.0547 3.7972 26 6 4.0710 -5.7767 2.9820 27 6 3.5322 -5.5302 1.5564 28 1 3.0749 -6.3723 1.0368 29 1 -0.4850 -0.8401 -0.0004 30 1 2.3174 -4.5363 -0.7385 31 1 5.4268 -3.4317 2.5235 32 1 6.6285 -4.3063 1.5245 33 1 5.7655 -4.2554 4.5349 34 1 5.7966 -5.9953 4.9091 35 1 7.8027 -7.3090 4.5437 36 1 10.2589 -7.3024 4.3696 37 1 11.4499 -5.2137 3.8386 38 1 10.1841 -3.1336 3.4723 39 1 7.7272 -3.1423 3.6371 40 1 3.6151 -5.0809 3.6863 41 1 3.8805 -6.8054 3.2878 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000398249991.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:33 Heat of formation + Delta-G solvation = -53.876419 kcal Electronic energy + Delta-G solvation = -24459.921804 eV Core-core repulsion = 20851.703641 eV Total energy + Delta-G solvation = -3608.218163 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 322.114 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.21784 -39.87892 -37.74252 -36.65645 -36.59516 -35.38793 -33.68030 -31.73585 -31.50076 -29.42872 -27.73361 -27.19826 -23.77875 -23.41588 -22.12348 -21.81253 -21.44955 -21.13106 -19.99635 -18.26331 -17.94613 -17.57156 -16.85765 -16.67527 -16.26553 -16.09704 -15.85284 -15.69230 -15.11649 -14.92233 -14.63610 -14.23256 -14.09853 -14.05352 -13.83229 -13.35683 -13.25544 -13.09973 -13.00993 -12.80732 -12.76995 -12.71007 -12.67584 -12.48804 -12.11376 -11.98073 -11.80343 -11.71795 -11.20419 -11.06119 -10.71520 -9.93025 -9.76154 -9.69352 -9.42578 -9.41310 -7.65326 0.05583 0.47055 0.56548 1.45773 1.49603 1.75727 2.29568 2.49995 2.57933 2.59834 2.77857 3.18592 3.33368 3.54405 3.69643 3.81801 3.88709 3.99949 4.04865 4.14037 4.21456 4.22878 4.33425 4.34808 4.41889 4.46153 4.59300 4.65815 4.72811 4.81424 4.90140 5.00760 5.13673 5.16271 5.21469 5.23071 5.41180 5.58361 5.67132 5.68411 5.79390 5.81135 5.96426 6.14329 6.18117 6.46679 7.93536 Molecular weight = 322.11amu Principal moments of inertia in cm(-1) A = 0.016945 B = 0.003128 C = 0.002766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1652.034955 B = 8950.226930 C =10118.742562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.877 5.877 2 C 0.036 3.964 3 Si 1.119 2.881 4 H -0.269 1.269 5 H -0.249 1.249 6 H -0.251 1.251 7 C -1.096 5.096 8 H 0.122 0.878 9 S 2.703 3.297 10 O -1.041 7.041 11 O -1.043 7.043 12 N -1.081 6.081 13 C 0.105 3.895 14 H 0.115 0.885 15 C -0.161 4.161 16 H 0.128 0.872 17 C 0.066 3.934 18 N -0.503 5.503 19 C 0.080 3.920 20 C -0.085 4.085 21 C -0.111 4.111 22 C -0.129 4.129 23 C -0.129 4.129 24 C -0.130 4.130 25 C -0.127 4.127 26 C 0.062 3.938 27 C -0.164 4.164 28 H 0.130 0.870 29 H 0.257 0.743 30 H 0.419 0.581 31 H 0.047 0.953 32 H 0.093 0.907 33 H 0.047 0.953 34 H 0.097 0.903 35 H 0.131 0.869 36 H 0.140 0.860 37 H 0.139 0.861 38 H 0.134 0.866 39 H 0.119 0.881 40 H 0.048 0.952 41 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.101 -11.441 8.941 25.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.507 5.507 2 C -0.175 4.175 3 Si 0.933 3.067 4 H -0.194 1.194 5 H -0.173 1.173 6 H -0.175 1.175 7 C -1.231 5.231 8 H 0.141 0.859 9 S 2.805 3.195 10 O -1.030 7.030 11 O -1.033 7.033 12 N -0.836 5.836 13 C -0.005 4.005 14 H 0.133 0.867 15 C -0.182 4.182 16 H 0.146 0.854 17 C -0.062 4.062 18 N -0.227 5.227 19 C -0.048 4.048 20 C -0.085 4.085 21 C -0.129 4.129 22 C -0.147 4.147 23 C -0.147 4.147 24 C -0.148 4.148 25 C -0.146 4.146 26 C -0.066 4.066 27 C -0.185 4.185 28 H 0.148 0.852 29 H 0.068 0.932 30 H 0.253 0.747 31 H 0.066 0.934 32 H 0.112 0.888 33 H 0.065 0.935 34 H 0.115 0.885 35 H 0.149 0.851 36 H 0.158 0.842 37 H 0.157 0.843 38 H 0.152 0.848 39 H 0.137 0.863 40 H 0.066 0.934 41 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 20.164 -10.392 8.903 24.369 hybrid contribution -0.277 -0.969 -0.274 1.045 sum 19.886 -11.361 8.630 24.475 Atomic orbital electron populations 1.71008 1.08542 1.30780 1.40377 1.27784 0.95052 1.08395 0.86226 0.83066 0.74829 0.68974 0.79819 1.19373 1.17308 1.17485 1.31813 1.09184 1.13164 1.68902 0.85943 1.00327 0.72896 0.74571 0.71688 1.93378 1.74593 1.88309 1.46735 1.93384 1.74848 1.88472 1.46566 1.54659 1.53305 1.48790 1.26823 1.21431 0.91125 0.98273 0.89639 0.86737 1.23977 0.89177 1.04244 1.00795 0.85432 1.22647 0.98467 0.92100 0.92959 1.65620 1.12332 1.34510 1.10223 1.21263 0.91151 1.01325 0.91015 1.19771 0.94746 0.93968 1.00042 1.21219 0.94506 0.97706 0.99481 1.21444 0.94439 0.99022 0.99766 1.21460 1.00962 0.92786 0.99505 1.21388 0.94049 0.99237 1.00162 1.21245 0.95137 0.97945 1.00264 1.22692 0.87208 1.02994 0.93688 1.23986 1.02794 0.93820 0.97908 0.85171 0.93247 0.74669 0.93445 0.88833 0.93522 0.88453 0.85114 0.84239 0.84294 0.84786 0.86274 0.93418 0.87387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -54.35 13.66 21.45 0.29 -54.05 16 2 C 0.04 2.02 5.46 84.65 0.46 2.48 16 3 Si 1.12 46.13 29.90 68.60 2.05 48.18 16 4 H -0.27 -10.92 7.11 99.48 0.71 -10.22 16 5 H -0.25 -9.16 7.11 99.48 0.71 -8.45 16 6 H -0.25 -9.31 7.11 99.48 0.71 -8.60 16 7 C -1.10 -59.35 9.72 67.73 0.66 -58.69 16 8 H 0.12 5.98 7.81 -2.91 -0.02 5.95 16 9 S 2.70 140.77 4.36 -56.49 -0.25 140.52 16 10 O -1.04 -59.97 17.40 -128.00 -2.23 -62.20 16 11 O -1.04 -60.30 17.63 -128.00 -2.26 -62.56 16 12 N -1.08 -41.35 6.04 -169.39 -1.02 -42.37 16 13 C 0.10 3.47 6.01 44.99 0.27 3.74 16 14 H 0.11 4.16 8.11 -2.39 -0.02 4.14 16 15 C -0.16 -4.19 7.05 -9.90 -0.07 -4.26 16 16 H 0.13 3.11 8.14 -2.39 -0.02 3.09 16 17 C 0.07 1.53 5.51 86.45 0.48 2.01 16 18 N -0.50 -10.67 5.33 -886.02 -4.72 -15.39 16 19 C 0.08 1.48 4.98 85.56 0.43 1.90 16 20 C -0.08 -1.59 5.19 -19.87 -0.10 -1.69 16 21 C -0.11 -1.87 9.70 22.27 0.22 -1.65 16 22 C -0.13 -1.93 10.05 22.27 0.22 -1.70 16 23 C -0.13 -1.91 10.05 22.27 0.22 -1.69 16 24 C -0.13 -2.14 10.05 22.27 0.22 -1.92 16 25 C -0.13 -2.37 8.93 22.27 0.20 -2.17 16 26 C 0.06 1.34 6.26 86.45 0.54 1.89 16 27 C -0.16 -4.20 7.05 -9.90 -0.07 -4.27 16 28 H 0.13 3.04 8.14 -2.38 -0.02 3.02 16 29 H 0.26 16.59 6.52 -92.70 -0.60 15.99 16 30 H 0.42 13.64 8.96 -96.75 -0.87 12.77 16 31 H 0.05 1.14 7.75 -2.38 -0.02 1.12 16 32 H 0.09 2.06 7.89 -2.39 -0.02 2.04 16 33 H 0.05 0.89 7.71 -2.39 -0.02 0.87 16 34 H 0.10 1.52 8.02 -2.39 -0.02 1.50 16 35 H 0.13 1.85 8.06 -2.91 -0.02 1.83 16 36 H 0.14 1.44 8.06 -2.91 -0.02 1.41 16 37 H 0.14 1.41 8.06 -2.91 -0.02 1.38 16 38 H 0.13 1.72 8.06 -2.91 -0.02 1.70 16 39 H 0.12 2.13 8.06 -2.91 -0.02 2.11 16 40 H 0.05 1.09 8.00 -2.39 -0.02 1.07 16 41 H 0.11 1.94 8.14 -2.39 -0.02 1.92 16 Total: -1.00 -75.13 357.13 -4.11 -79.25 By element: Atomic # 1 Polarization: 34.32 SS G_CDS: 0.34 Total: 34.66 kcal Atomic # 6 Polarization: -69.71 SS G_CDS: 3.68 Total: -66.03 kcal Atomic # 7 Polarization: -106.37 SS G_CDS: -5.45 Total: -111.82 kcal Atomic # 8 Polarization: -120.27 SS G_CDS: -4.48 Total: -124.76 kcal Atomic # 14 Polarization: 46.13 SS G_CDS: 2.05 Total: 48.18 kcal Atomic # 16 Polarization: 140.77 SS G_CDS: -0.25 Total: 140.52 kcal Total: -75.13 -4.11 -79.25 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000398249991.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.370 kcal (2) G-P(sol) polarization free energy of solvation -75.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds