Wall clock time and date at job start Fri Apr 10 2020 18:26:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34230 * 117.00099 * 2 1 4 4 O 1.20823 * 119.99777 * 359.97438 * 3 2 1 5 5 C 1.50703 * 120.00433 * 180.02562 * 3 2 1 6 6 N 1.46498 * 109.47248 * 179.97438 * 5 3 2 7 7 C 1.36869 * 120.00037 * 264.69774 * 6 5 3 8 8 H 1.08006 * 119.99911 * 131.08558 * 7 6 5 9 9 C 1.39052 * 120.00424 * 311.09194 * 7 6 5 10 10 N 1.31362 * 120.00081 * 170.03830 * 9 7 6 11 11 Si 1.86797 * 119.99644 * 350.03998 * 9 7 6 12 12 H 1.48496 * 109.47351 * 95.22697 * 11 9 7 13 13 H 1.48508 * 109.46866 * 215.22957 * 11 9 7 14 14 H 1.48506 * 109.46988 * 335.22517 * 11 9 7 15 15 C 1.34774 * 119.99831 * 84.70377 * 6 5 3 16 16 O 1.21588 * 120.00254 * 2.13753 * 15 6 5 17 17 C 1.47738 * 119.99958 * 182.14116 * 15 6 5 18 18 C 1.39753 * 120.49310 * 318.38944 * 17 15 6 19 19 N 1.31718 * 120.88026 * 179.72191 * 18 17 15 20 20 C 1.31764 * 122.05891 * 0.53182 * 19 18 17 21 21 C 1.39700 * 120.88438 * 359.47264 * 20 19 18 22 22 C 1.47740 * 120.49068 * 180.23633 * 21 20 19 23 23 O 1.21466 * 119.99716 * 179.97438 * 22 21 20 24 24 O 1.34705 * 119.99890 * 359.97438 * 22 21 20 25 25 C 1.45197 * 116.99691 * 180.02562 * 24 22 21 26 26 C 1.39789 * 120.49878 * 138.37234 * 17 15 6 27 27 H 1.08995 * 109.47186 * 60.00321 * 1 2 3 28 28 H 1.08997 * 109.47084 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47104 * 299.99989 * 1 2 3 30 30 H 1.08996 * 109.46881 * 59.99362 * 5 3 2 31 31 H 1.09001 * 109.46703 * 299.99969 * 5 3 2 32 32 H 0.96995 * 119.99809 * 179.97438 * 10 9 7 33 33 H 1.08001 * 119.55997 * 359.97438 * 18 17 15 34 34 H 1.07995 * 119.55654 * 179.74715 * 20 19 18 35 35 H 1.09004 * 109.46938 * 179.97438 * 25 24 22 36 36 H 1.09004 * 109.46672 * 299.99154 * 25 24 22 37 37 H 1.08992 * 109.47547 * 59.99501 * 25 24 22 38 38 H 1.08002 * 120.92116 * 0.03898 * 26 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2750 -0.0006 6 7 3.9816 2.6798 -0.0011 7 6 4.2803 3.3048 -1.1816 8 1 3.8487 4.2690 -1.4064 9 6 5.1392 2.6983 -2.0916 10 7 5.2741 3.1962 -3.2997 11 14 6.1010 1.1757 -1.5960 12 1 5.3640 -0.0384 -2.0296 13 1 7.4371 1.2015 -2.2439 14 1 6.2669 1.1535 -0.1204 15 6 4.0698 3.3568 1.1609 16 8 3.8424 2.7912 2.2129 17 6 4.4427 4.7864 1.1565 18 6 5.4567 5.2521 0.3151 19 7 5.7917 6.5259 0.3010 20 6 5.2023 7.4127 1.0772 21 6 4.1785 7.0345 1.9492 22 6 3.5201 8.0370 2.8119 23 8 2.6305 7.6983 3.5665 24 8 3.9063 9.3265 2.7616 25 6 3.2158 10.2560 3.6377 26 6 3.7864 5.6934 1.9936 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 3.9557 0.7810 -0.8907 31 1 3.9564 0.7807 0.8892 32 1 5.8736 2.7734 -3.9343 33 1 5.9698 4.5591 -0.3352 34 1 5.5119 8.4465 1.0355 35 1 3.6231 11.2574 3.4983 36 1 2.1524 10.2593 3.3981 37 1 3.3538 9.9491 4.6744 38 1 2.9986 5.3670 2.6564 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000535026117.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:54 Heat of formation + Delta-G solvation = -144.725899 kcal Electronic energy + Delta-G solvation = -27236.383676 eV Core-core repulsion = 23045.640019 eV Total energy + Delta-G solvation = -4190.743658 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.109 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.72675 -40.18009 -39.55545 -38.32646 -36.44761 -36.03618 -35.12785 -32.34571 -32.28110 -31.70743 -28.98257 -27.85125 -26.70202 -25.41165 -24.36848 -23.52136 -21.46662 -20.96064 -19.64440 -18.38137 -17.55917 -17.32742 -17.06145 -16.66309 -16.38595 -16.25389 -15.97389 -15.84389 -15.47433 -14.98820 -14.34968 -14.02929 -13.67250 -13.62944 -13.29361 -13.12300 -12.96657 -12.88546 -12.65622 -12.59060 -12.24048 -11.99001 -11.89840 -11.69269 -11.25799 -10.88327 -10.77871 -10.76561 -10.44356 -10.29528 -10.00354 -9.82681 -9.65309 -9.25617 -8.98474 -8.80292 -8.11295 -6.69559 -4.50857 0.74017 1.29267 2.57510 2.62510 2.73587 2.86806 2.89648 3.07064 3.08531 3.53702 3.85702 3.95992 4.20192 4.57628 4.67483 4.85886 4.99515 5.01956 5.06980 5.21945 5.27779 5.29146 5.35046 5.37839 5.40754 5.55781 5.63669 5.71329 5.79536 5.90924 6.14785 6.26833 6.46708 6.74006 6.86272 6.99471 7.71025 7.72688 8.00784 8.15405 8.26300 8.59588 8.91539 9.24644 10.37790 Molecular weight = 322.11amu Principal moments of inertia in cm(-1) A = 0.013338 B = 0.004430 C = 0.003598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2098.741519 B = 6319.684213 C = 7781.139014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.368 6.368 3 C 0.450 3.550 4 O -0.490 6.490 5 C 0.109 3.891 6 N -0.443 5.443 7 C -0.357 4.357 8 H 0.107 0.893 9 C 0.072 3.928 10 N -0.845 5.845 11 Si 0.862 3.138 12 H -0.266 1.266 13 H -0.276 1.276 14 H -0.252 1.252 15 C 0.548 3.452 16 O -0.574 6.574 17 C -0.156 4.156 18 C 0.203 3.797 19 N -0.499 5.499 20 C 0.167 3.833 21 C -0.205 4.205 22 C 0.520 3.480 23 O -0.506 6.506 24 O -0.355 6.355 25 C 0.038 3.962 26 C 0.028 3.972 27 H 0.060 0.940 28 H 0.095 0.905 29 H 0.059 0.941 30 H 0.110 0.890 31 H 0.113 0.887 32 H 0.281 0.719 33 H 0.190 0.810 34 H 0.167 0.833 35 H 0.102 0.898 36 H 0.063 0.937 37 H 0.063 0.937 38 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.157 3.735 6.271 7.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.285 6.285 3 C 0.290 3.710 4 O -0.375 6.375 5 C -0.016 4.016 6 N -0.164 5.164 7 C -0.484 4.484 8 H 0.124 0.876 9 C -0.138 4.138 10 N -0.477 5.477 11 Si 0.687 3.313 12 H -0.192 1.192 13 H -0.202 1.202 14 H -0.176 1.176 15 C 0.337 3.663 16 O -0.457 6.457 17 C -0.161 4.161 18 C 0.047 3.953 19 N -0.207 5.207 20 C 0.008 3.992 21 C -0.208 4.208 22 C 0.365 3.635 23 O -0.395 6.395 24 O -0.272 6.272 25 C -0.056 4.056 26 C 0.002 3.998 27 H 0.078 0.922 28 H 0.114 0.886 29 H 0.077 0.923 30 H 0.128 0.872 31 H 0.131 0.869 32 H 0.092 0.908 33 H 0.206 0.794 34 H 0.184 0.816 35 H 0.120 0.880 36 H 0.082 0.918 37 H 0.081 0.919 38 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -1.033 3.942 6.238 7.451 hybrid contribution -0.792 -0.897 0.486 1.292 sum -1.826 3.044 6.724 7.604 Atomic orbital electron populations 1.23150 0.77356 1.02938 1.02316 1.86514 1.22796 1.34324 1.84850 1.24668 0.92787 0.81277 0.72268 1.90627 1.66618 1.36296 1.43986 1.21424 0.86884 0.88177 1.05083 1.43163 1.58213 1.08362 1.06635 1.19116 1.28377 1.06744 0.94150 0.87594 1.25524 0.95607 0.97906 0.94789 1.69634 1.34449 1.39966 1.03667 0.87059 0.80626 0.82740 0.80826 1.19179 1.20164 1.17595 1.17987 0.78897 0.85975 0.83415 1.90691 1.53910 1.69717 1.31378 1.20737 1.00429 0.95266 0.99692 1.23997 0.90228 0.91566 0.89463 1.67959 1.28269 1.02813 1.21635 1.23303 0.88525 0.99812 0.87511 1.19863 1.03848 0.92926 1.04191 1.20958 0.80405 0.81625 0.80520 1.90837 1.29620 1.80747 1.38308 1.86531 1.60797 1.18662 1.61186 1.23266 0.97566 0.91292 0.93494 1.21657 0.95168 0.89920 0.93043 0.92159 0.88626 0.92271 0.87239 0.86922 0.90782 0.79374 0.81559 0.87977 0.91834 0.91870 0.83358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.50 10.56 101.05 1.07 1.57 16 2 O -0.37 -6.49 10.57 -39.26 -0.41 -6.90 16 3 C 0.45 9.41 7.99 36.01 0.29 9.70 16 4 O -0.49 -11.64 16.06 -18.75 -0.30 -11.94 16 5 C 0.11 2.26 4.39 -5.19 -0.02 2.24 16 6 N -0.44 -10.12 1.56 -117.21 -0.18 -10.30 16 7 C -0.36 -8.56 6.61 -15.00 -0.10 -8.66 16 8 H 0.11 2.81 7.43 -52.48 -0.39 2.42 16 9 C 0.07 1.71 5.19 -17.45 -0.09 1.62 16 10 N -0.84 -21.22 13.95 55.50 0.77 -20.45 16 11 Si 0.86 17.60 24.85 -169.99 -4.22 13.38 16 12 H -0.27 -5.20 6.90 56.52 0.39 -4.81 16 13 H -0.28 -5.63 7.11 56.52 0.40 -5.22 16 14 H -0.25 -5.07 7.00 56.52 0.40 -4.67 16 15 C 0.55 12.51 7.13 -12.38 -0.09 12.43 16 16 O -0.57 -13.93 16.61 5.29 0.09 -13.85 16 17 C -0.16 -3.21 5.30 -104.87 -0.56 -3.77 16 18 C 0.20 3.98 9.26 -17.03 -0.16 3.82 16 19 N -0.50 -8.98 10.33 -12.54 -0.13 -9.11 16 20 C 0.17 2.60 10.78 -17.03 -0.18 2.41 16 21 C -0.20 -3.40 5.88 -104.89 -0.62 -4.01 16 22 C 0.52 8.13 7.90 34.61 0.27 8.41 16 23 O -0.51 -9.08 16.20 -19.24 -0.31 -9.39 16 24 O -0.36 -4.48 9.83 -40.50 -0.40 -4.88 16 25 C 0.04 0.34 10.56 101.05 1.07 1.41 16 26 C 0.03 0.53 9.35 -38.42 -0.36 0.18 16 27 H 0.06 0.83 8.13 -51.93 -0.42 0.40 16 28 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 29 H 0.06 0.81 8.13 -51.93 -0.42 0.39 16 30 H 0.11 2.19 4.23 -51.93 -0.22 1.97 16 31 H 0.11 2.16 7.56 -51.93 -0.39 1.76 16 32 H 0.28 6.57 8.31 -40.82 -0.34 6.23 16 33 H 0.19 3.84 6.23 -52.49 -0.33 3.51 16 34 H 0.17 2.03 7.61 -52.49 -0.40 1.63 16 35 H 0.10 0.60 8.14 -51.93 -0.42 0.17 16 36 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.15 2.87 7.73 -52.49 -0.41 2.46 16 LS Contribution 339.80 15.07 5.12 5.12 Total: -1.00 -30.65 339.80 -3.28 -33.93 By element: Atomic # 1 Polarization: 10.88 SS G_CDS: -3.82 Total: 7.06 kcal Atomic # 6 Polarization: 26.82 SS G_CDS: 0.52 Total: 27.34 kcal Atomic # 7 Polarization: -40.32 SS G_CDS: 0.46 Total: -39.86 kcal Atomic # 8 Polarization: -45.62 SS G_CDS: -1.34 Total: -46.96 kcal Atomic # 14 Polarization: 17.60 SS G_CDS: -4.22 Total: 13.38 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -30.65 -3.28 -33.93 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000535026117.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.800 kcal (2) G-P(sol) polarization free energy of solvation -30.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds