Wall clock time and date at job start Fri Apr 10 2020 18:27:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46500 * 119.99946 * 2 1 4 4 C 1.50699 * 109.47402 * 276.14609 * 3 2 1 5 5 H 1.07999 * 120.00049 * 5.04984 * 4 3 2 6 6 C 1.37880 * 120.00177 * 185.04493 * 4 3 2 7 7 N 1.31515 * 119.99943 * 180.02562 * 6 4 3 8 8 Si 1.86799 * 119.99989 * 0.02562 * 6 4 3 9 9 H 1.48503 * 109.46955 * 89.99921 * 8 6 4 10 10 H 1.48495 * 109.47324 * 209.99715 * 8 6 4 11 11 H 1.48500 * 109.47257 * 330.00515 * 8 6 4 12 12 S 1.65601 * 120.00170 * 180.02562 * 2 1 3 13 13 O 1.42104 * 106.40326 * 150.79468 * 12 2 1 14 14 O 1.42098 * 106.40195 * 17.87218 * 12 2 1 15 15 N 1.65602 * 107.21594 * 264.33313 * 12 2 1 16 16 C 1.46492 * 119.99920 * 63.22192 * 15 12 2 17 17 H 1.08998 * 109.47665 * 23.68471 * 16 15 12 18 18 C 1.50710 * 109.47301 * 263.68748 * 16 15 12 19 19 O 1.20823 * 119.99379 * 332.44527 * 18 16 15 20 20 O 1.34218 * 119.99996 * 152.44693 * 18 16 15 21 21 C 1.53001 * 109.47474 * 143.68680 * 16 15 12 22 22 H 1.09009 * 110.56367 * 57.31656 * 21 16 15 23 23 C 1.54509 * 110.51550 * 180.02562 * 21 16 15 24 24 C 1.54475 * 104.06439 * 118.64718 * 23 21 16 25 25 O 1.44433 * 104.80365 * 23.97518 * 24 23 21 26 26 C 1.44426 * 105.27195 * 319.49219 * 25 24 23 27 27 H 1.09001 * 109.46491 * 269.99787 * 1 2 3 28 28 H 1.09006 * 109.47467 * 29.99235 * 1 2 3 29 29 H 1.09000 * 109.47134 * 149.99902 * 1 2 3 30 30 H 1.09001 * 109.47123 * 36.15103 * 3 2 1 31 31 H 1.09006 * 109.47246 * 156.14802 * 3 2 1 32 32 H 0.97001 * 119.99775 * 179.97438 * 7 6 4 33 33 H 0.96998 * 120.00014 * 243.22355 * 15 12 2 34 34 H 0.96703 * 117.00193 * 180.02562 * 20 18 16 35 35 H 1.09003 * 110.50662 * 237.29163 * 23 21 16 36 36 H 1.09003 * 110.50849 * 359.85845 * 23 21 16 37 37 H 1.08991 * 110.37264 * 142.80939 * 24 23 21 38 38 H 1.09006 * 110.37139 * 265.03746 * 24 23 21 39 39 H 1.08998 * 110.37585 * 281.67400 * 26 25 24 40 40 H 1.09000 * 110.36682 * 159.34341 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3169 1.7799 -1.4126 5 1 1.8209 1.2599 -2.2188 6 6 3.0594 2.9115 -1.6759 7 7 3.1632 3.3578 -2.9086 8 14 3.9179 3.8106 -0.2816 9 1 5.2843 3.2571 -0.1029 10 1 4.0083 5.2567 -0.6065 11 1 3.1438 3.6325 0.9731 12 16 2.2930 -1.4341 -0.0006 13 8 3.5242 -1.1864 -0.6657 14 8 1.3701 -2.4301 -0.4194 15 7 2.6734 -1.7812 1.5733 16 6 1.6070 -2.0172 2.5496 17 1 0.7038 -2.3383 2.0307 18 6 1.3264 -0.7436 3.3049 19 8 2.1998 0.0790 3.4475 20 8 0.1064 -0.5232 3.8191 21 6 2.0457 -3.1060 3.5309 22 1 2.9749 -2.8234 4.0260 23 6 0.9367 -3.3749 4.5726 24 6 0.5633 -4.8571 4.3492 25 8 1.7340 -5.4450 3.7411 26 6 2.2111 -4.4575 2.8014 27 1 -0.3632 0.0000 1.0277 28 1 -0.3634 0.8901 -0.5137 29 1 -0.3633 -0.8900 -0.5138 30 1 1.6605 1.9983 0.6062 31 1 3.1932 1.1135 0.4156 32 1 3.6853 4.1541 -3.0937 33 1 3.6022 -1.8282 1.8488 34 1 -0.0259 0.3082 4.2950 35 1 1.3173 -3.2250 5.5829 36 1 0.0768 -2.7304 4.3899 37 1 0.3464 -5.3414 5.3012 38 1 -0.2938 -4.9358 3.6803 39 1 1.6081 -4.4750 1.8936 40 1 3.2602 -4.6349 2.5644 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000547881048.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:02 Heat of formation + Delta-G solvation = -235.017404 kcal Electronic energy + Delta-G solvation = -27378.877537 eV Core-core repulsion = 23319.662497 eV Total energy + Delta-G solvation = -4059.215040 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.112 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.71644 -40.15419 -38.43549 -37.40718 -37.31629 -36.99566 -36.55587 -34.54784 -33.03756 -30.33756 -30.12124 -28.04716 -26.86776 -23.91357 -23.72456 -23.27743 -21.48692 -20.62884 -19.37282 -19.19275 -18.73726 -18.48861 -18.05764 -17.66306 -17.20578 -17.03437 -16.38240 -16.16314 -16.03152 -15.77157 -15.36505 -14.72764 -14.69728 -14.56713 -14.20276 -13.92499 -13.81279 -13.49237 -13.37270 -13.24493 -13.18395 -13.06038 -12.68065 -12.58942 -12.48049 -12.42921 -12.34887 -12.17881 -12.12338 -11.97597 -11.74195 -11.57717 -10.88202 -10.81273 -10.74364 -9.88192 -8.32693 -6.37780 -0.55101 1.06499 1.32644 1.36124 1.44503 1.63260 2.08957 2.31006 2.44276 2.92922 3.01103 3.28330 3.42087 3.53342 3.75333 3.86987 3.92256 4.09614 4.16563 4.29000 4.35804 4.54954 4.57563 4.65233 4.81629 4.83061 4.87932 4.91387 5.00676 5.06100 5.10052 5.25047 5.43309 5.58149 5.60090 5.82310 5.84810 6.26084 6.65551 6.94135 7.25339 8.84549 Molecular weight = 322.11amu Principal moments of inertia in cm(-1) A = 0.020427 B = 0.004612 C = 0.004252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1370.397997 B = 6069.434072 C = 6584.196810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.999 5.999 3 C 0.244 3.756 4 C -0.542 4.542 5 H 0.035 0.965 6 C 0.013 3.987 7 N -0.944 5.944 8 Si 0.937 3.063 9 H -0.271 1.271 10 H -0.275 1.275 11 H -0.239 1.239 12 S 2.792 3.208 13 O -1.001 7.001 14 O -0.990 6.990 15 N -1.101 6.101 16 C 0.168 3.832 17 H 0.138 0.862 18 C 0.466 3.534 19 O -0.526 6.526 20 O -0.500 6.500 21 C -0.115 4.115 22 H 0.106 0.894 23 C -0.153 4.153 24 C 0.038 3.962 25 O -0.393 6.393 26 C 0.047 3.953 27 H 0.076 0.924 28 H 0.072 0.928 29 H 0.080 0.920 30 H 0.047 0.953 31 H 0.027 0.973 32 H 0.268 0.732 33 H 0.430 0.570 34 H 0.429 0.571 35 H 0.093 0.907 36 H 0.105 0.895 37 H 0.110 0.890 38 H 0.071 0.929 39 H 0.067 0.933 40 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.146 -13.121 21.022 26.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.840 5.840 3 C 0.119 3.881 4 C -0.581 4.581 5 H 0.054 0.946 6 C -0.186 4.186 7 N -0.584 5.584 8 Si 0.760 3.240 9 H -0.196 1.196 10 H -0.200 1.200 11 H -0.162 1.162 12 S 2.799 3.201 13 O -0.984 6.984 14 O -0.973 6.973 15 N -0.862 5.862 16 C 0.058 3.942 17 H 0.155 0.845 18 C 0.306 3.694 19 O -0.414 6.414 20 O -0.314 6.314 21 C -0.136 4.136 22 H 0.124 0.876 23 C -0.191 4.191 24 C -0.038 4.038 25 O -0.312 6.312 26 C -0.030 4.030 27 H 0.094 0.906 28 H 0.091 0.909 29 H 0.099 0.901 30 H 0.065 0.935 31 H 0.045 0.955 32 H 0.077 0.923 33 H 0.267 0.733 34 H 0.292 0.708 35 H 0.112 0.888 36 H 0.123 0.877 37 H 0.128 0.872 38 H 0.090 0.910 39 H 0.085 0.915 40 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -7.691 -13.839 19.966 25.482 hybrid contribution 0.851 1.836 0.339 2.052 sum -6.840 -12.004 20.305 24.560 Atomic orbital electron populations 1.21683 0.77544 1.04241 1.02706 1.57340 1.15983 1.21532 1.89193 1.19073 0.91434 0.82219 0.95361 1.21678 1.31646 1.10886 0.93919 0.94616 1.25824 0.96536 0.97966 0.98239 1.70048 1.42167 1.24782 1.21360 0.85878 0.79792 0.78054 0.80319 1.19641 1.19979 1.16183 1.01565 0.72532 0.72678 0.73279 1.93617 1.46760 1.85635 1.72434 1.93543 1.64965 1.58008 1.80792 1.55922 1.16002 1.86856 1.27421 1.20589 0.92618 0.90041 0.90954 0.84486 1.23986 0.80280 0.88526 0.76658 1.90766 1.47607 1.47019 1.55979 1.84457 1.32434 1.47246 1.67251 1.22748 1.01917 0.93532 0.95371 0.87562 1.23157 0.98624 0.97927 0.99362 1.23650 0.88417 0.92262 0.99516 1.89133 1.44704 1.40605 1.56793 1.23535 1.01791 0.85333 0.92309 0.90555 0.90908 0.90113 0.93517 0.95536 0.92259 0.73295 0.70834 0.88795 0.87674 0.87211 0.91043 0.91465 0.87822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.54 10.64 127.77 1.36 3.90 16 2 N -1.00 -38.60 3.23 -543.22 -1.75 -40.35 16 3 C 0.24 11.38 4.15 85.63 0.36 11.74 16 4 C -0.54 -31.57 9.93 25.60 0.25 -31.32 16 5 H 0.04 2.32 8.06 -2.91 -0.02 2.29 16 6 C 0.01 0.75 5.47 84.66 0.46 1.22 16 7 N -0.94 -59.82 13.96 21.45 0.30 -59.52 16 8 Si 0.94 44.13 27.37 68.60 1.88 46.01 16 9 H -0.27 -12.68 7.11 99.48 0.71 -11.97 16 10 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 11 H -0.24 -10.16 6.69 99.48 0.67 -9.49 16 12 S 2.79 102.06 6.02 -56.49 -0.34 101.72 16 13 O -1.00 -46.88 17.30 -128.00 -2.21 -49.09 16 14 O -0.99 -36.02 16.07 -128.00 -2.06 -38.08 16 15 N -1.10 -28.18 4.93 -172.52 -0.85 -29.03 16 16 C 0.17 3.29 2.18 44.25 0.10 3.39 16 17 H 0.14 2.40 7.50 -2.39 -0.02 2.38 16 18 C 0.47 9.54 6.97 71.24 0.50 10.04 16 19 O -0.53 -14.80 17.41 21.97 0.38 -14.41 16 20 O -0.50 -6.38 11.96 -51.30 -0.61 -6.99 16 21 C -0.12 -1.75 2.82 -9.78 -0.03 -1.78 16 22 H 0.11 1.51 8.14 -2.38 -0.02 1.49 16 23 C -0.15 -1.68 6.30 31.61 0.20 -1.48 16 24 C 0.04 0.46 7.63 72.48 0.55 1.01 16 25 O -0.39 -7.42 11.65 -148.98 -1.74 -9.16 16 26 C 0.05 0.82 6.97 72.48 0.51 1.33 16 27 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 28 H 0.07 2.37 8.07 -2.38 -0.02 2.36 16 29 H 0.08 2.31 7.00 -2.39 -0.02 2.29 16 30 H 0.05 2.04 7.52 -2.39 -0.02 2.03 16 31 H 0.03 1.26 6.88 -2.38 -0.02 1.25 16 32 H 0.27 15.80 8.31 -92.71 -0.77 15.03 16 33 H 0.43 9.68 8.85 -96.75 -0.86 8.82 16 34 H 0.43 2.52 9.10 -74.06 -0.67 1.84 16 35 H 0.09 0.84 8.14 -2.39 -0.02 0.83 16 36 H 0.10 0.98 6.07 -2.39 -0.01 0.97 16 37 H 0.11 0.95 8.14 -2.39 -0.02 0.93 16 38 H 0.07 0.78 8.14 -2.38 -0.02 0.76 16 39 H 0.07 1.26 7.83 -2.39 -0.02 1.25 16 40 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 Total: -1.00 -82.99 347.91 -3.23 -86.22 By element: Atomic # 1 Polarization: 15.12 SS G_CDS: -0.48 Total: 14.64 kcal Atomic # 6 Polarization: -6.21 SS G_CDS: 4.26 Total: -1.95 kcal Atomic # 7 Polarization: -126.60 SS G_CDS: -2.31 Total: -128.90 kcal Atomic # 8 Polarization: -111.49 SS G_CDS: -6.24 Total: -117.73 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 1.88 Total: 46.01 kcal Atomic # 16 Polarization: 102.06 SS G_CDS: -0.34 Total: 101.72 kcal Total: -82.99 -3.23 -86.22 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000547881048.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -148.800 kcal (2) G-P(sol) polarization free energy of solvation -82.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -231.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -235.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds