Wall clock time and date at job start Fri Apr 10 2020 18:27:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.39050 * 119.99860 * 2 1 4 4 C 1.39241 * 119.92905 * 5.69601 * 3 2 1 5 5 C 1.37597 * 120.06490 * 180.30250 * 4 3 2 6 6 C 1.39813 * 119.92844 * 359.41884 * 5 4 3 7 7 C 1.47517 * 120.06437 * 180.25339 * 6 5 4 8 8 O 1.21599 * 119.99919 * 180.02562 * 7 6 5 9 9 N 1.34773 * 120.00180 * 0.02562 * 7 6 5 10 10 C 1.46504 * 119.99991 * 179.97438 * 9 7 6 11 11 C 1.50694 * 109.47162 * 179.97438 * 10 9 7 12 12 O 1.21294 * 120.00347 * 0.02562 * 11 10 9 13 13 N 1.34779 * 120.00235 * 180.02562 * 11 10 9 14 14 C 1.37095 * 120.00309 * 179.97438 * 13 11 10 15 15 H 1.07998 * 119.99686 * 359.97438 * 14 13 11 16 16 C 1.38947 * 119.99997 * 179.97438 * 14 13 11 17 17 N 1.31409 * 120.00002 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 120.00064 * 179.97438 * 16 14 13 19 19 H 1.48502 * 109.46908 * 0.02562 * 18 16 14 20 20 H 1.48495 * 109.46847 * 120.00016 * 18 16 14 21 21 H 1.48489 * 109.47437 * 240.00514 * 18 16 14 22 22 C 1.39779 * 119.86395 * 0.28605 * 6 5 4 23 23 C 1.37628 * 119.93191 * 359.97438 * 22 6 5 24 24 N 1.48020 * 119.96809 * 180.02562 * 23 22 6 25 25 O 1.21799 * 119.99672 * 353.84194 * 24 23 22 26 26 O 1.21797 * 119.99892 * 173.83986 * 24 23 22 27 27 H 1.08999 * 109.46534 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47045 * 299.99512 * 1 2 3 29 29 H 1.08997 * 109.46974 * 59.99759 * 1 2 3 30 30 H 0.96994 * 120.00064 * 179.97438 * 2 1 3 31 31 H 1.08001 * 119.97020 * 0.02562 * 4 3 2 32 32 H 1.07994 * 120.03227 * 179.70449 * 5 4 3 33 33 H 0.96995 * 120.00389 * 359.97438 * 9 7 6 34 34 H 1.08997 * 109.46987 * 300.00038 * 10 9 7 35 35 H 1.09007 * 109.47050 * 59.99924 * 10 9 7 36 36 H 0.97004 * 119.99415 * 0.02562 * 13 11 10 37 37 H 0.97008 * 119.99783 * 180.02562 * 17 16 14 38 38 H 1.08004 * 120.03362 * 179.97438 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1603 1.2042 0.0000 4 6 1.4677 2.4062 0.1198 5 6 2.1523 3.5998 0.1138 6 6 3.5458 3.6041 -0.0004 7 6 4.2832 4.8818 -0.0014 8 8 5.4951 4.8842 -0.1013 9 7 3.6138 6.0463 0.1083 10 6 4.3462 7.3151 0.1078 11 6 3.3724 8.4574 0.2408 12 8 2.1834 8.2337 0.3280 13 7 3.8224 9.7276 0.2630 14 6 2.9364 10.7668 0.3835 15 1 1.8777 10.5676 0.4602 16 6 3.4005 12.0763 0.4068 17 7 4.6886 12.3187 0.3129 18 14 2.1932 13.4924 0.5703 19 1 0.8109 12.9567 0.6578 20 1 2.5021 14.2668 1.7990 21 1 2.3067 14.3791 -0.6154 22 6 4.2386 2.3955 -0.1143 23 6 3.5477 1.2052 -0.1131 24 7 4.2805 -0.0752 -0.2331 25 8 5.4799 -0.0728 -0.4451 26 8 3.6842 -1.1312 -0.1197 27 1 -0.3632 -1.0277 0.0005 28 1 -0.3633 0.5137 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 1.9500 -0.8400 0.0004 31 1 0.3917 2.4020 0.2129 32 1 1.6142 4.5320 0.2020 33 1 2.6471 6.0445 0.1876 34 1 5.0436 7.3324 0.9453 35 1 4.8982 7.4157 -0.8268 36 1 4.7732 9.9065 0.1929 37 1 5.0126 13.2329 0.3296 38 1 5.3149 2.3957 -0.2031 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000557717742.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:11 Heat of formation + Delta-G solvation = -38.749993 kcal Electronic energy + Delta-G solvation = -25751.690781 eV Core-core repulsion = 21597.835334 eV Total energy + Delta-G solvation = -4153.855446 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.116 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.52549 -40.48638 -39.22019 -38.17295 -37.06370 -35.88794 -34.63649 -33.85318 -32.38942 -31.45535 -30.77730 -28.09078 -27.21248 -26.14475 -24.61789 -23.43426 -22.55686 -20.93202 -19.83142 -19.24796 -18.93083 -18.16631 -18.06016 -17.78694 -17.29591 -16.58098 -15.90459 -15.45089 -15.39666 -15.02047 -14.85248 -14.64565 -14.44799 -14.12794 -14.03348 -13.54855 -13.37376 -13.13540 -12.83799 -12.37698 -12.13078 -12.04890 -11.73635 -11.69384 -11.45319 -11.26167 -11.19564 -10.84500 -10.46082 -10.38672 -10.03612 -10.02768 -9.71256 -8.98621 -8.72312 -8.30821 -8.16972 -6.57615 -3.99922 -0.32054 0.47222 1.06518 1.15782 2.51809 2.64898 3.05583 3.11607 3.19288 3.25726 3.40916 3.66594 3.88972 4.05042 4.30869 4.45421 4.47674 4.58228 4.65923 4.78921 4.82548 5.09457 5.10992 5.16362 5.19002 5.52134 5.65489 5.78562 5.86412 5.87178 5.98206 6.04701 6.37073 6.50360 6.96968 7.40288 7.43976 7.61405 7.85101 8.24028 8.37855 8.98045 9.32131 9.79197 10.59126 Molecular weight = 322.12amu Principal moments of inertia in cm(-1) A = 0.026696 B = 0.002246 C = 0.002075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.582598 B =12461.634217 C =13487.706176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.717 5.717 3 C 0.301 3.699 4 C -0.208 4.208 5 C 0.016 3.984 6 C -0.187 4.187 7 C 0.563 3.437 8 O -0.542 6.542 9 N -0.701 5.701 10 C 0.109 3.891 11 C 0.427 3.573 12 O -0.600 6.600 13 N -0.547 5.547 14 C -0.306 4.306 15 H 0.106 0.894 16 C 0.026 3.974 17 N -0.893 5.893 18 Si 0.933 3.067 19 H -0.267 1.267 20 H -0.280 1.280 21 H -0.280 1.280 22 C 0.052 3.948 23 C -0.137 4.137 24 N 0.054 4.946 25 O -0.148 6.148 26 O -0.209 6.209 27 H 0.085 0.915 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.422 0.578 31 H 0.152 0.848 32 H 0.151 0.849 33 H 0.409 0.591 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.396 0.604 37 H 0.274 0.726 38 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.014 -21.271 -0.508 22.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.354 5.354 3 C 0.186 3.814 4 C -0.231 4.231 5 C -0.004 4.004 6 C -0.193 4.193 7 C 0.349 3.651 8 O -0.421 6.421 9 N -0.355 5.355 10 C -0.019 4.019 11 C 0.212 3.788 12 O -0.487 6.487 13 N -0.181 5.181 14 C -0.435 4.435 15 H 0.124 0.876 16 C -0.177 4.177 17 N -0.533 5.533 18 Si 0.759 3.241 19 H -0.191 1.191 20 H -0.206 1.206 21 H -0.206 1.206 22 C 0.031 3.969 23 C -0.228 4.228 24 N 0.564 4.436 25 O -0.368 6.368 26 O -0.405 6.405 27 H 0.104 0.896 28 H 0.084 0.916 29 H 0.083 0.917 30 H 0.271 0.729 31 H 0.170 0.830 32 H 0.168 0.832 33 H 0.248 0.752 34 H 0.105 0.895 35 H 0.105 0.895 36 H 0.230 0.770 37 H 0.084 0.916 38 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -7.450 -20.778 -0.452 22.078 hybrid contribution -0.083 0.316 0.047 0.330 sum -7.533 -20.461 -0.405 21.808 Atomic orbital electron populations 1.21866 0.78926 1.03875 1.02239 1.45859 1.07607 1.06891 1.75063 1.17750 0.87789 0.88693 0.87213 1.20685 1.01089 0.89289 1.12046 1.21634 0.92939 0.98916 0.86902 1.19586 0.93489 0.93127 1.13144 1.17747 0.87019 0.83156 0.77165 1.90808 1.13347 1.87429 1.50479 1.45554 1.11937 1.04744 1.73262 1.21006 0.94531 0.82754 1.03576 1.19694 0.89046 0.84147 0.85881 1.90484 1.16662 1.83965 1.57583 1.41806 1.10422 1.04086 1.61808 1.19773 0.91828 0.84151 1.47757 0.87578 1.25343 0.96700 0.98952 0.96715 1.69621 1.12737 1.21992 1.48909 0.85751 0.80184 0.80202 0.77914 1.19126 1.20575 1.20570 1.20843 1.02269 0.87979 0.85779 1.20332 0.90280 0.84216 1.27928 1.43363 1.01187 1.02104 0.96949 1.94576 0.96989 1.94112 1.51131 1.94109 1.68510 1.20433 1.57455 0.89623 0.91629 0.91671 0.72927 0.83041 0.83174 0.75167 0.89483 0.89483 0.76968 0.91552 0.81646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.29 9.96 59.85 0.60 0.88 16 2 N -0.72 -5.28 5.75 -65.40 -0.38 -5.66 16 3 C 0.30 2.74 6.63 -83.86 -0.56 2.19 16 4 C -0.21 -1.59 9.29 -39.44 -0.37 -1.96 16 5 C 0.02 0.15 9.53 -39.23 -0.37 -0.23 16 6 C -0.19 -2.20 5.88 -104.95 -0.62 -2.82 16 7 C 0.56 8.37 7.76 -12.48 -0.10 8.28 16 8 O -0.54 -9.70 16.34 5.28 0.09 -9.61 16 9 N -0.70 -10.69 5.48 -62.53 -0.34 -11.03 16 10 C 0.11 1.88 6.15 -5.19 -0.03 1.84 16 11 C 0.43 9.26 7.85 -10.99 -0.09 9.17 16 12 O -0.60 -14.42 15.24 5.55 0.08 -14.33 16 13 N -0.55 -13.03 5.29 -10.97 -0.06 -13.09 16 14 C -0.31 -8.03 9.68 -14.94 -0.14 -8.18 16 15 H 0.11 2.90 7.16 -52.49 -0.38 2.53 16 16 C 0.03 0.66 5.50 -17.47 -0.10 0.57 16 17 N -0.89 -23.28 13.05 55.50 0.72 -22.56 16 18 Si 0.93 19.97 29.55 -169.99 -5.02 14.94 16 19 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 20 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 21 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 22 C 0.05 0.61 9.09 -39.23 -0.36 0.25 16 23 C -0.14 -1.54 6.85 -79.81 -0.55 -2.09 16 24 N 0.05 0.69 4.45 34.03 0.15 0.84 16 25 O -0.15 -2.05 18.45 -29.46 -0.54 -2.59 16 26 O -0.21 -2.51 15.70 -29.46 -0.46 -2.98 16 27 H 0.09 0.19 8.14 -51.93 -0.42 -0.24 16 28 H 0.07 0.20 7.71 -51.93 -0.40 -0.20 16 29 H 0.06 0.21 8.12 -51.93 -0.42 -0.21 16 30 H 0.42 3.41 5.24 -41.32 -0.22 3.19 16 31 H 0.15 0.74 6.70 -52.49 -0.35 0.38 16 32 H 0.15 1.15 6.39 -52.49 -0.34 0.82 16 33 H 0.41 5.84 5.45 -40.82 -0.22 5.62 16 34 H 0.09 1.44 8.14 -51.93 -0.42 1.02 16 35 H 0.09 1.44 8.14 -51.92 -0.42 1.02 16 36 H 0.40 9.10 7.90 -40.82 -0.32 8.78 16 37 H 0.27 6.75 8.31 -40.82 -0.34 6.41 16 38 H 0.17 2.04 7.20 -52.48 -0.38 1.66 16 LS Contribution 339.40 15.07 5.11 5.11 Total: -1.00 -31.84 339.40 -6.75 -38.58 By element: Atomic # 1 Polarization: 17.88 SS G_CDS: -3.43 Total: 14.45 kcal Atomic # 6 Polarization: 10.59 SS G_CDS: -2.68 Total: 7.92 kcal Atomic # 7 Polarization: -51.59 SS G_CDS: 0.10 Total: -51.49 kcal Atomic # 8 Polarization: -28.68 SS G_CDS: -0.84 Total: -29.52 kcal Atomic # 14 Polarization: 19.97 SS G_CDS: -5.02 Total: 14.94 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -31.84 -6.75 -38.58 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000557717742.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.166 kcal (2) G-P(sol) polarization free energy of solvation -31.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.584 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds