Wall clock time and date at job start Fri Apr 10 2020 18:27:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.39050 * 119.99860 * 2 1 4 4 C 1.39241 * 119.92905 * 5.69601 * 3 2 1 5 5 C 1.37597 * 120.06490 * 180.30250 * 4 3 2 6 6 C 1.39813 * 119.92844 * 359.41884 * 5 4 3 7 7 C 1.47517 * 120.06437 * 180.25339 * 6 5 4 8 8 O 1.21599 * 119.99919 * 180.02562 * 7 6 5 9 9 N 1.34773 * 120.00180 * 0.02562 * 7 6 5 10 10 C 1.46504 * 119.99991 * 179.97438 * 9 7 6 11 11 C 1.50694 * 109.47162 * 179.97438 * 10 9 7 12 12 O 1.21294 * 120.00347 * 0.02562 * 11 10 9 13 13 N 1.34779 * 120.00235 * 180.02562 * 11 10 9 14 14 C 1.37095 * 120.00309 * 179.97438 * 13 11 10 15 15 H 1.07998 * 119.99686 * 359.97438 * 14 13 11 16 16 C 1.38947 * 119.99997 * 179.97438 * 14 13 11 17 17 N 1.31409 * 120.00002 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 120.00064 * 179.97438 * 16 14 13 19 19 H 1.48502 * 109.46908 * 0.02562 * 18 16 14 20 20 H 1.48495 * 109.46847 * 120.00016 * 18 16 14 21 21 H 1.48489 * 109.47437 * 240.00514 * 18 16 14 22 22 C 1.39779 * 119.86395 * 0.28605 * 6 5 4 23 23 C 1.37628 * 119.93191 * 359.97438 * 22 6 5 24 24 N 1.48020 * 119.96809 * 180.02562 * 23 22 6 25 25 O 1.21799 * 119.99672 * 353.84194 * 24 23 22 26 26 O 1.21797 * 119.99892 * 173.83986 * 24 23 22 27 27 H 1.08999 * 109.46534 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47045 * 299.99512 * 1 2 3 29 29 H 1.08997 * 109.46974 * 59.99759 * 1 2 3 30 30 H 0.96994 * 120.00064 * 179.97438 * 2 1 3 31 31 H 1.08001 * 119.97020 * 0.02562 * 4 3 2 32 32 H 1.07994 * 120.03227 * 179.70449 * 5 4 3 33 33 H 0.96995 * 120.00389 * 359.97438 * 9 7 6 34 34 H 1.08997 * 109.46987 * 300.00038 * 10 9 7 35 35 H 1.09007 * 109.47050 * 59.99924 * 10 9 7 36 36 H 0.97004 * 119.99415 * 0.02562 * 13 11 10 37 37 H 0.97008 * 119.99783 * 180.02562 * 17 16 14 38 38 H 1.08004 * 120.03362 * 179.97438 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1603 1.2042 0.0000 4 6 1.4677 2.4062 0.1198 5 6 2.1523 3.5998 0.1138 6 6 3.5458 3.6041 -0.0004 7 6 4.2832 4.8818 -0.0014 8 8 5.4951 4.8842 -0.1013 9 7 3.6138 6.0463 0.1083 10 6 4.3462 7.3151 0.1078 11 6 3.3724 8.4574 0.2408 12 8 2.1834 8.2337 0.3280 13 7 3.8224 9.7276 0.2630 14 6 2.9364 10.7668 0.3835 15 1 1.8777 10.5676 0.4602 16 6 3.4005 12.0763 0.4068 17 7 4.6886 12.3187 0.3129 18 14 2.1932 13.4924 0.5703 19 1 0.8109 12.9567 0.6578 20 1 2.5021 14.2668 1.7990 21 1 2.3067 14.3791 -0.6154 22 6 4.2386 2.3955 -0.1143 23 6 3.5477 1.2052 -0.1131 24 7 4.2805 -0.0752 -0.2331 25 8 5.4799 -0.0728 -0.4451 26 8 3.6842 -1.1312 -0.1197 27 1 -0.3632 -1.0277 0.0005 28 1 -0.3633 0.5137 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 1.9500 -0.8400 0.0004 31 1 0.3917 2.4020 0.2129 32 1 1.6142 4.5320 0.2020 33 1 2.6471 6.0445 0.1876 34 1 5.0436 7.3324 0.9453 35 1 4.8982 7.4157 -0.8268 36 1 4.7732 9.9065 0.1929 37 1 5.0126 13.2329 0.3296 38 1 5.3149 2.3957 -0.2031 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000557717742.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:10 Heat of formation + Delta-G solvation = -61.903251 kcal Electronic energy + Delta-G solvation = -25752.694781 eV Core-core repulsion = 21597.835334 eV Total energy + Delta-G solvation = -4154.859447 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.116 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.44483 -41.51055 -40.42797 -39.69090 -37.99700 -36.63584 -36.27998 -35.42336 -33.40475 -33.17948 -31.57438 -29.43802 -27.91174 -27.18857 -26.18464 -24.36648 -23.35927 -21.98327 -21.41233 -20.45250 -20.00256 -19.84621 -18.85007 -18.69409 -18.38538 -17.46322 -17.39406 -16.78777 -16.69598 -16.37584 -15.80573 -15.68597 -15.54275 -15.38620 -15.14585 -15.00664 -14.17536 -13.96544 -13.91927 -13.53984 -13.50959 -13.20078 -13.06049 -12.90798 -12.66367 -12.44366 -12.42864 -12.10809 -12.09857 -11.56609 -11.54090 -11.27697 -10.79818 -10.54922 -10.28643 -10.07943 -9.00238 -8.50048 -5.99971 -1.20320 -0.38157 0.22343 0.28614 1.36267 1.44541 1.56068 1.58073 1.90162 1.91625 2.05154 2.31382 2.45393 3.10772 3.13624 3.17699 3.48627 3.66985 3.72766 3.75623 4.18912 4.32375 4.33438 4.43701 4.43968 4.53008 4.61632 4.76142 4.88414 4.92365 5.04337 5.17576 5.26213 5.40099 5.73433 5.92894 6.23746 6.41106 6.49745 6.53003 7.03836 7.05793 7.45627 7.94694 8.67006 Molecular weight = 322.12amu Principal moments of inertia in cm(-1) A = 0.026696 B = 0.002246 C = 0.002075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.582598 B =12461.634217 C =13487.706176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.063 3.937 2 N -0.708 5.708 3 C 0.306 3.694 4 C -0.189 4.189 5 C 0.024 3.976 6 C -0.200 4.200 7 C 0.566 3.434 8 O -0.578 6.578 9 N -0.698 5.698 10 C 0.120 3.880 11 C 0.435 3.565 12 O -0.621 6.621 13 N -0.560 5.560 14 C -0.334 4.334 15 H 0.089 0.911 16 C -0.012 4.012 17 N -0.917 5.917 18 Si 0.996 3.004 19 H -0.268 1.268 20 H -0.273 1.273 21 H -0.273 1.273 22 C 0.046 3.954 23 C -0.152 4.152 24 N 0.057 4.943 25 O -0.206 6.206 26 O -0.188 6.188 27 H 0.104 0.896 28 H 0.082 0.918 29 H 0.078 0.922 30 H 0.419 0.581 31 H 0.191 0.809 32 H 0.168 0.832 33 H 0.416 0.584 34 H 0.097 0.903 35 H 0.097 0.903 36 H 0.399 0.601 37 H 0.279 0.721 38 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.890 -21.916 -0.271 24.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.342 5.342 3 C 0.187 3.813 4 C -0.212 4.212 5 C 0.004 3.996 6 C -0.206 4.206 7 C 0.355 3.645 8 O -0.460 6.460 9 N -0.353 5.353 10 C -0.008 4.008 11 C 0.222 3.778 12 O -0.509 6.509 13 N -0.196 5.196 14 C -0.463 4.463 15 H 0.107 0.893 16 C -0.213 4.213 17 N -0.557 5.557 18 Si 0.820 3.180 19 H -0.192 1.192 20 H -0.198 1.198 21 H -0.198 1.198 22 C 0.025 3.975 23 C -0.243 4.243 24 N 0.560 4.440 25 O -0.411 6.411 26 O -0.392 6.392 27 H 0.123 0.877 28 H 0.100 0.900 29 H 0.097 0.903 30 H 0.266 0.734 31 H 0.208 0.792 32 H 0.185 0.815 33 H 0.256 0.744 34 H 0.115 0.885 35 H 0.115 0.885 36 H 0.233 0.767 37 H 0.089 0.911 38 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -10.246 -21.435 -0.236 23.759 hybrid contribution 0.601 0.319 -0.009 0.680 sum -9.645 -21.117 -0.245 23.216 Atomic orbital electron populations 1.22236 0.76296 1.05792 1.03613 1.46137 1.09350 1.06056 1.72629 1.17962 0.86917 0.90040 0.86342 1.21037 1.02603 0.87715 1.09826 1.21786 0.91505 1.00346 0.85992 1.19291 0.94597 0.91157 1.15542 1.18143 0.86673 0.83820 0.75911 1.90788 1.15053 1.87948 1.52165 1.45485 1.12119 1.04134 1.73521 1.20827 0.93531 0.81943 1.04496 1.20341 0.89376 0.84467 0.83628 1.90460 1.18032 1.84488 1.57907 1.41865 1.10276 1.04523 1.62904 1.19777 0.91532 0.85474 1.49521 0.89302 1.26131 0.98359 1.00818 0.95964 1.69690 1.13981 1.22752 1.49310 0.84815 0.77937 0.77114 0.78159 1.19181 1.19840 1.19831 1.20686 1.01684 0.88625 0.86502 1.20387 0.91155 0.83140 1.29632 1.43567 1.01088 1.02613 0.96684 1.94586 0.97852 1.94412 1.54261 1.94070 1.68262 1.21001 1.55870 0.87744 0.89952 0.90345 0.73351 0.79223 0.81501 0.74422 0.88523 0.88529 0.76732 0.91142 0.83381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.19 9.96 127.77 1.27 1.46 16 2 N -0.71 -8.02 5.75 -360.81 -2.07 -10.10 16 3 C 0.31 4.75 6.63 38.47 0.26 5.01 16 4 C -0.19 -2.15 9.29 22.36 0.21 -1.95 16 5 C 0.02 0.37 9.53 22.50 0.21 0.58 16 6 C -0.20 -4.56 5.88 -20.08 -0.12 -4.68 16 7 C 0.57 16.78 7.76 86.69 0.67 17.45 16 8 O -0.58 -21.19 16.34 -4.03 -0.07 -21.26 16 9 N -0.70 -20.73 5.48 -470.01 -2.57 -23.31 16 10 C 0.12 4.08 6.15 85.63 0.53 4.60 16 11 C 0.43 18.81 7.85 87.65 0.69 19.49 16 12 O -0.62 -29.60 15.24 -3.07 -0.05 -29.65 16 13 N -0.56 -26.96 5.29 -306.99 -1.62 -28.59 16 14 C -0.33 -17.70 9.68 84.04 0.81 -16.89 16 15 H 0.09 4.94 7.16 -2.91 -0.02 4.92 16 16 C -0.01 -0.62 5.50 84.93 0.47 -0.15 16 17 N -0.92 -47.79 13.05 21.66 0.28 -47.51 16 18 Si 1.00 40.56 29.55 68.60 2.03 42.59 16 19 H -0.27 -10.80 7.11 99.48 0.71 -10.09 16 20 H -0.27 -10.75 7.11 99.48 0.71 -10.05 16 21 H -0.27 -10.75 7.11 99.48 0.71 -10.04 16 22 C 0.05 1.10 9.09 22.50 0.20 1.31 16 23 C -0.15 -3.33 6.85 36.46 0.25 -3.08 16 24 N 0.06 1.45 4.45 -46.25 -0.21 1.25 16 25 O -0.21 -6.10 18.45 18.89 0.35 -5.75 16 26 O -0.19 -4.39 15.70 18.89 0.30 -4.09 16 27 H 0.10 -0.01 8.14 -2.39 -0.02 -0.03 16 28 H 0.08 0.06 7.71 -2.39 -0.02 0.04 16 29 H 0.08 0.11 8.12 -2.39 -0.02 0.09 16 30 H 0.42 5.62 5.24 -100.61 -0.53 5.10 16 31 H 0.19 0.73 6.70 -2.91 -0.02 0.71 16 32 H 0.17 2.02 6.39 -2.91 -0.02 2.00 16 33 H 0.42 11.28 5.45 -92.71 -0.51 10.78 16 34 H 0.10 3.15 8.14 -2.39 -0.02 3.13 16 35 H 0.10 3.15 8.14 -2.38 -0.02 3.13 16 36 H 0.40 18.56 7.90 -92.71 -0.73 17.83 16 37 H 0.28 13.61 8.31 -92.70 -0.77 12.84 16 38 H 0.15 4.02 7.20 -2.91 -0.02 4.00 16 Total: -1.00 -70.12 339.40 1.23 -68.89 By element: Atomic # 1 Polarization: 34.96 SS G_CDS: -0.59 Total: 34.37 kcal Atomic # 6 Polarization: 17.71 SS G_CDS: 5.46 Total: 23.16 kcal Atomic # 7 Polarization: -102.06 SS G_CDS: -6.19 Total: -108.26 kcal Atomic # 8 Polarization: -61.28 SS G_CDS: 0.53 Total: -60.75 kcal Atomic # 14 Polarization: 40.56 SS G_CDS: 2.03 Total: 42.59 kcal Total: -70.12 1.23 -68.89 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000557717742.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.985 kcal (2) G-P(sol) polarization free energy of solvation -70.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.888 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds