Wall clock time and date at job start Fri Apr 10 2020 18:25:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09001 * 109.47442 * 2 1 4 4 C 1.50699 * 109.47138 * 240.00079 * 2 1 3 5 5 H 1.08003 * 119.99870 * 274.97531 * 4 2 1 6 6 C 1.37871 * 120.00345 * 94.98041 * 4 2 1 7 7 N 1.31516 * 120.00333 * 184.90658 * 6 4 2 8 8 Si 1.86798 * 119.99944 * 4.89845 * 6 4 2 9 9 H 1.48504 * 109.47252 * 84.83680 * 8 6 4 10 10 H 1.48508 * 109.47408 * 204.83750 * 8 6 4 11 11 H 1.48504 * 109.47133 * 324.83327 * 8 6 4 12 12 N 1.46504 * 109.47374 * 120.00086 * 2 1 3 13 13 C 1.46493 * 120.00199 * 59.99636 * 12 2 1 14 14 S 1.65601 * 119.99621 * 240.00004 * 12 2 1 15 15 O 1.42102 * 106.39874 * 156.45661 * 14 12 2 16 16 O 1.42099 * 106.40440 * 23.54007 * 14 12 2 17 17 N 1.65601 * 107.21770 * 269.99402 * 14 12 2 18 18 C 1.47151 * 120.98513 * 269.72098 * 17 14 12 19 19 C 1.52878 * 108.60426 * 230.50356 * 18 17 14 20 20 O 1.42959 * 109.29813 * 307.93372 * 19 18 17 21 21 C 1.42958 * 114.17017 * 62.45290 * 20 19 18 22 22 H 1.09008 * 109.50801 * 57.34187 * 21 20 19 23 23 C 1.50694 * 109.55597 * 177.46806 * 21 20 19 24 24 O 1.20820 * 120.00106 * 4.77124 * 23 21 20 25 25 O 1.34233 * 119.99817 * 184.77403 * 23 21 20 26 26 C 1.47152 * 120.97539 * 90.00593 * 17 14 12 27 27 H 1.09004 * 109.46967 * 174.98185 * 1 2 3 28 28 H 1.09002 * 109.47467 * 294.97456 * 1 2 3 29 29 H 1.08996 * 109.47660 * 54.98094 * 1 2 3 30 30 H 0.97002 * 120.00048 * 180.02562 * 7 6 4 31 31 H 1.08995 * 109.47486 * 270.00379 * 13 12 2 32 32 H 1.09010 * 109.46878 * 30.00587 * 13 12 2 33 33 H 1.09000 * 109.47254 * 150.00288 * 13 12 2 34 34 H 1.09002 * 109.67776 * 350.27992 * 18 17 14 35 35 H 1.08997 * 109.68085 * 110.83501 * 18 17 14 36 36 H 1.09009 * 109.57663 * 187.92335 * 19 18 17 37 37 H 1.08996 * 109.37210 * 67.81897 * 19 18 17 38 38 H 0.96697 * 116.99934 * 180.02562 * 25 23 21 39 39 H 1.09002 * 109.68086 * 249.15932 * 26 17 14 40 40 H 1.08993 * 109.68877 * 9.67888 * 26 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.1358 -1.7854 -1.2289 6 6 2.3598 0.0120 -2.3582 7 7 2.7057 -0.6133 -3.4623 8 14 2.3121 1.8789 -2.3179 9 1 3.5975 2.3956 -1.7829 10 1 2.1039 2.3986 -3.6935 11 1 1.1969 2.3270 -1.4456 12 7 2.0183 -0.6906 1.1962 13 6 1.6644 -2.0931 1.4281 14 16 2.9704 0.1143 2.2861 15 8 2.8228 -0.5645 3.5258 16 8 2.6903 1.4973 2.1192 17 7 4.5438 -0.1042 1.8179 18 6 5.3322 -1.2413 2.3185 19 6 6.6618 -0.7133 2.8576 20 8 7.2845 0.1026 1.8624 21 6 6.5345 1.2663 1.5064 22 1 6.3508 1.8676 2.3969 23 6 7.3103 2.0786 0.5018 24 8 8.3549 1.6590 0.0630 25 8 6.8409 3.2685 0.0947 26 6 5.1965 0.8366 0.8938 27 1 -0.3633 -1.0238 -0.0899 28 1 -0.3634 0.4339 0.9316 29 1 -0.3634 0.5897 -0.8416 30 1 2.9365 -0.1050 -4.2556 31 1 0.7376 -2.1444 1.9994 32 1 1.5295 -2.5969 0.4708 33 1 2.4629 -2.5818 1.9864 34 1 4.7865 -1.7428 3.1178 35 1 5.5213 -1.9429 1.5061 36 1 7.3150 -1.5509 3.1028 37 1 6.4786 -0.1193 3.7529 38 1 7.3734 3.7528 -0.5511 39 1 5.3718 0.3478 -0.0646 40 1 4.5609 1.7102 0.7494 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000564216295.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:36 Heat of formation + Delta-G solvation = -218.628523 kcal Electronic energy + Delta-G solvation = -27808.365227 eV Core-core repulsion = 23749.860863 eV Total energy + Delta-G solvation = -4058.504365 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.112 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.69819 -40.02802 -38.52133 -38.00262 -37.28413 -37.00822 -35.96815 -34.49380 -33.02820 -31.68566 -28.81638 -27.32757 -27.01078 -26.23824 -23.74016 -22.44011 -22.12280 -20.08330 -19.36129 -19.29781 -18.96153 -18.37227 -17.89099 -17.70157 -17.33287 -16.95556 -16.49787 -15.99070 -15.80333 -15.47803 -15.29296 -15.12528 -14.71452 -14.49896 -14.40413 -13.96485 -13.70231 -13.54890 -13.44000 -13.37215 -13.11938 -13.06115 -12.99662 -12.69200 -12.67344 -12.59202 -12.47853 -12.12388 -11.98667 -11.79140 -11.51060 -11.48857 -11.27432 -10.73184 -10.08820 -9.70212 -8.30941 -6.34342 -0.50452 0.93134 1.30651 1.37413 1.44630 1.46024 1.74421 2.30683 2.38506 2.90690 3.05973 3.18291 3.37515 3.59623 3.80443 4.00399 4.02440 4.07305 4.15608 4.30773 4.41619 4.55173 4.57873 4.70745 4.76618 4.79927 4.87770 4.91712 4.94597 5.12458 5.22873 5.36137 5.41114 5.47348 5.53565 5.83457 5.92710 6.33492 6.72691 6.82743 7.31058 8.83958 Molecular weight = 322.11amu Principal moments of inertia in cm(-1) A = 0.011370 B = 0.007440 C = 0.005402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2461.984300 B = 3762.450052 C = 5181.653930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.235 3.765 3 H 0.046 0.954 4 C -0.510 4.510 5 H 0.057 0.943 6 C 0.033 3.967 7 N -0.932 5.932 8 Si 0.893 3.107 9 H -0.255 1.255 10 H -0.283 1.283 11 H -0.248 1.248 12 N -0.993 5.993 13 C 0.099 3.901 14 S 2.788 3.212 15 O -0.988 6.988 16 O -1.002 7.002 17 N -1.005 6.005 18 C 0.073 3.927 19 C 0.052 3.948 20 O -0.371 6.371 21 C 0.093 3.907 22 H 0.128 0.872 23 C 0.495 3.505 24 O -0.525 6.525 25 O -0.502 6.502 26 C 0.100 3.900 27 H 0.061 0.939 28 H 0.047 0.953 29 H 0.050 0.950 30 H 0.266 0.734 31 H 0.062 0.938 32 H 0.069 0.931 33 H 0.075 0.925 34 H 0.120 0.880 35 H 0.081 0.919 36 H 0.146 0.854 37 H 0.077 0.923 38 H 0.436 0.564 39 H 0.071 0.929 40 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.578 2.517 12.428 13.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.130 3.870 3 H 0.064 0.936 4 C -0.549 4.549 5 H 0.075 0.925 6 C -0.167 4.167 7 N -0.572 5.572 8 Si 0.717 3.283 9 H -0.179 1.179 10 H -0.209 1.209 11 H -0.171 1.171 12 N -0.834 5.834 13 C -0.046 4.046 14 S 2.799 3.201 15 O -0.972 6.972 16 O -0.987 6.987 17 N -0.844 5.844 18 C -0.052 4.052 19 C -0.025 4.025 20 O -0.290 6.290 21 C 0.033 3.967 22 H 0.145 0.855 23 C 0.336 3.664 24 O -0.413 6.413 25 O -0.317 6.317 26 C -0.026 4.026 27 H 0.080 0.920 28 H 0.066 0.934 29 H 0.069 0.931 30 H 0.076 0.924 31 H 0.081 0.919 32 H 0.088 0.912 33 H 0.094 0.906 34 H 0.138 0.862 35 H 0.100 0.900 36 H 0.164 0.836 37 H 0.095 0.905 38 H 0.299 0.701 39 H 0.089 0.911 40 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 5.542 2.649 13.104 14.472 hybrid contribution 0.256 0.800 -1.477 1.699 sum 5.798 3.449 11.627 13.442 Atomic orbital electron populations 1.22119 0.96272 1.01900 1.00047 1.18943 0.93111 0.92070 0.82894 0.93621 1.21313 1.42873 0.94994 0.95767 0.92521 1.25568 0.94348 1.01662 0.95106 1.69993 1.47273 1.37430 1.02463 0.86557 0.81119 0.82549 0.78103 1.17946 1.20912 1.17139 1.57822 1.64765 1.22707 1.38078 1.21406 1.00884 0.80256 1.02062 1.01661 0.72438 0.72857 0.73140 1.93538 1.85909 1.76084 1.41634 1.93532 1.84202 1.33754 1.87190 1.58187 1.29878 1.36297 1.60069 1.22363 0.93842 0.87898 1.01056 1.23269 0.93837 0.95821 0.89600 1.87995 1.45005 1.35230 1.60753 1.21659 0.89247 0.88491 0.97352 0.85481 1.22698 0.83256 0.80150 0.80250 1.90724 1.24752 1.70834 1.55012 1.84467 1.55646 1.31146 1.60451 1.21813 0.93592 0.94166 0.93068 0.92039 0.93395 0.93058 0.92435 0.91933 0.91240 0.90649 0.86196 0.90044 0.83621 0.90498 0.70080 0.91094 0.87831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.57 9.10 71.98 0.65 -4.92 16 2 C 0.23 10.14 2.28 44.24 0.10 10.24 16 3 H 0.05 2.08 4.06 -2.39 -0.01 2.07 16 4 C -0.51 -25.75 8.72 25.60 0.22 -25.53 16 5 H 0.06 3.11 6.82 -2.91 -0.02 3.09 16 6 C 0.03 1.76 5.47 84.65 0.46 2.23 16 7 N -0.93 -53.80 13.96 21.45 0.30 -53.50 16 8 Si 0.89 40.67 26.99 68.60 1.85 42.52 16 9 H -0.26 -11.00 7.11 99.48 0.71 -10.30 16 10 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 11 H -0.25 -10.77 6.82 99.48 0.68 -10.09 16 12 N -0.99 -36.89 3.12 -520.46 -1.62 -38.51 16 13 C 0.10 3.09 9.44 127.77 1.21 4.30 16 14 S 2.79 97.42 6.11 -56.49 -0.35 97.08 16 15 O -0.99 -33.99 15.82 -128.00 -2.03 -36.02 16 16 O -1.00 -40.06 15.32 -128.00 -1.96 -42.02 16 17 N -1.00 -30.59 3.40 -512.37 -1.74 -32.34 16 18 C 0.07 1.70 6.68 86.21 0.58 2.28 16 19 C 0.05 1.00 6.97 71.94 0.50 1.51 16 20 O -0.37 -10.02 9.93 -129.99 -1.29 -11.31 16 21 C 0.09 2.53 3.30 29.95 0.10 2.63 16 22 H 0.13 2.76 8.14 -2.38 -0.02 2.74 16 23 C 0.50 13.97 7.66 71.23 0.55 14.52 16 24 O -0.52 -17.91 17.27 28.39 0.49 -17.42 16 25 O -0.50 -11.21 13.42 -51.44 -0.69 -11.90 16 26 C 0.10 3.22 5.98 86.35 0.52 3.74 16 27 H 0.06 2.25 7.84 -2.38 -0.02 2.23 16 28 H 0.05 1.65 8.14 -2.39 -0.02 1.64 16 29 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 30 H 0.27 14.62 8.31 -92.71 -0.77 13.84 16 31 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 32 H 0.07 2.34 6.56 -2.38 -0.02 2.33 16 33 H 0.07 1.97 7.79 -2.39 -0.02 1.95 16 34 H 0.12 2.40 6.94 -2.39 -0.02 2.39 16 35 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 36 H 0.15 1.91 8.14 -2.38 -0.02 1.89 16 37 H 0.08 1.25 8.14 -2.39 -0.02 1.24 16 38 H 0.44 5.54 9.10 -74.06 -0.67 4.87 16 39 H 0.07 2.54 8.14 -2.39 -0.02 2.52 16 40 H 0.10 3.49 6.95 -2.39 -0.02 3.47 16 Total: -1.00 -71.31 341.49 -1.78 -73.09 By element: Atomic # 1 Polarization: 18.97 SS G_CDS: 0.38 Total: 19.35 kcal Atomic # 6 Polarization: 6.10 SS G_CDS: 4.89 Total: 10.99 kcal Atomic # 7 Polarization: -121.28 SS G_CDS: -3.07 Total: -124.35 kcal Atomic # 8 Polarization: -113.19 SS G_CDS: -5.48 Total: -118.67 kcal Atomic # 14 Polarization: 40.67 SS G_CDS: 1.85 Total: 42.52 kcal Atomic # 16 Polarization: 97.42 SS G_CDS: -0.35 Total: 97.08 kcal Total: -71.31 -1.78 -73.09 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000564216295.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -145.537 kcal (2) G-P(sol) polarization free energy of solvation -71.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -216.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -218.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds