Wall clock time and date at job start Fri Apr 10 2020 18:25:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.39020 * 120.00357 * 2 1 4 4 N 1.32357 * 119.64176 * 0.02562 * 3 2 1 5 5 C 1.31886 * 121.94491 * 179.97438 * 4 3 2 6 6 C 1.37998 * 121.00199 * 359.71503 * 5 4 3 7 7 C 1.39982 * 119.16685 * 0.53664 * 6 5 4 8 8 C 1.48164 * 120.87818 * 179.74910 * 7 6 5 9 9 O 1.21511 * 120.00196 * 173.47978 * 8 7 6 10 10 N 1.34777 * 120.00048 * 353.47991 * 8 7 6 11 11 C 1.47584 * 134.49341 * 174.48656 * 10 8 7 12 12 C 1.53951 * 86.11461 * 155.35861 * 11 10 8 13 13 O 1.42897 * 113.74071 * 269.14968 * 12 11 10 14 14 C 1.50703 * 113.73885 * 137.95436 * 12 11 10 15 15 H 1.08004 * 120.00060 * 1.92559 * 14 12 11 16 16 C 1.37872 * 119.99857 * 181.92334 * 14 12 11 17 17 N 1.31523 * 120.00143 * 179.97438 * 16 14 12 18 18 Si 1.86802 * 120.00062 * 359.97438 * 16 14 12 19 19 H 1.48503 * 109.47088 * 269.99924 * 18 16 14 20 20 H 1.48498 * 109.47063 * 30.00247 * 18 16 14 21 21 H 1.48497 * 109.47205 * 150.00325 * 18 16 14 22 22 C 1.47821 * 134.45740 * 354.35401 * 10 8 7 23 23 C 1.39081 * 119.64733 * 179.97438 * 3 2 1 24 24 N 1.48020 * 120.53046 * 359.97438 * 23 3 2 25 25 O 1.21799 * 119.99965 * 270.01638 * 24 23 3 26 26 O 1.21799 * 120.00079 * 90.02214 * 24 23 3 27 27 H 1.09002 * 109.47038 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47201 * 299.99885 * 1 2 3 29 29 H 1.09003 * 109.46577 * 59.99763 * 1 2 3 30 30 H 0.97010 * 119.99677 * 180.02562 * 2 1 3 31 31 H 1.07997 * 119.50072 * 179.97438 * 5 4 3 32 32 H 1.08000 * 120.41826 * 180.30510 * 6 5 4 33 33 H 1.08996 * 113.77137 * 41.05974 * 11 10 8 34 34 H 1.08993 * 113.87182 * 269.66766 * 11 10 8 35 35 H 0.96704 * 114.00299 * 178.07757 * 13 12 11 36 36 H 0.97000 * 120.00254 * 179.97438 * 17 16 14 37 37 H 1.09001 * 113.76921 * 90.37759 * 22 10 8 38 38 H 1.08999 * 113.83331 * 318.91783 * 22 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1602 1.2039 0.0000 4 7 1.4913 2.3460 0.0005 5 6 2.1044 3.5137 0.0010 6 6 3.4821 3.5932 0.0070 7 6 4.2336 2.4122 0.0010 8 6 5.7146 2.4534 0.0015 9 8 6.3510 1.4246 0.1158 10 7 6.3561 3.6320 -0.1249 11 6 7.7696 4.0520 -0.0642 12 6 7.3437 5.2452 -0.9387 13 8 7.4565 4.9994 -2.3419 14 6 7.9608 6.5549 -0.5203 15 1 8.6572 6.5846 0.3047 16 6 7.6365 7.7151 -1.1908 17 7 8.1747 8.8582 -0.8253 18 14 6.4327 7.6637 -2.6182 19 1 7.1750 7.4340 -3.8838 20 1 5.4612 6.5606 -2.4069 21 1 5.7049 8.9556 -2.6988 22 6 5.9257 5.0225 -0.3824 23 6 3.5510 1.1953 0.0005 24 7 4.2950 -0.0844 0.0017 25 8 4.6004 -0.6103 1.0570 26 8 4.6018 -0.6114 -1.0526 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3632 0.5139 -0.8900 30 1 1.9500 -0.8402 -0.0004 31 1 1.5194 4.4215 0.0010 32 1 3.9743 4.5545 0.0123 33 1 8.4539 3.3648 -0.5618 34 1 8.1030 4.3358 0.9339 35 1 7.1622 5.7359 -2.8952 36 1 7.9468 9.6745 -1.2973 37 1 5.7145 5.5918 0.5228 38 1 5.1405 5.1086 -1.1335 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000572614977.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:44 Heat of formation + Delta-G solvation = 6.889007 kcal Electronic energy + Delta-G solvation = -27761.884023 eV Core-core repulsion = 23610.007632 eV Total energy + Delta-G solvation = -4151.876391 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.116 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.49166 -42.03476 -41.19859 -39.54383 -37.66289 -37.27144 -36.41079 -34.56295 -34.42648 -32.42593 -30.77828 -28.31933 -27.90182 -27.53466 -27.08312 -24.74938 -24.09026 -22.15551 -21.15449 -20.25312 -19.97699 -19.84376 -19.38497 -18.84932 -18.22697 -18.02009 -17.37126 -16.99651 -16.89035 -16.19734 -16.06647 -15.69166 -15.52216 -15.37820 -14.98731 -14.71133 -14.41919 -14.18118 -14.10928 -13.96687 -13.16400 -13.04855 -12.90233 -12.73611 -12.51455 -12.46725 -12.34112 -12.00228 -11.92229 -11.82756 -11.64626 -11.27316 -11.19085 -10.98205 -10.54092 -9.94292 -9.40670 -8.41445 -6.56084 -1.08044 -0.70866 -0.40221 0.20001 1.24189 1.29491 1.32339 1.38861 1.44283 1.65102 2.19579 2.22664 2.63703 2.78582 3.01835 3.15776 3.22517 3.41349 3.65550 3.68710 4.03521 4.20020 4.24497 4.29785 4.44211 4.49491 4.56309 4.56878 4.63075 4.82155 4.82932 4.88987 5.06261 5.24618 5.54122 5.65480 6.03991 6.32740 6.33636 6.44177 6.53788 6.56072 6.65277 7.12651 8.73553 Molecular weight = 322.12amu Principal moments of inertia in cm(-1) A = 0.019307 B = 0.004047 C = 0.003584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1449.931425 B = 6917.662378 C = 7810.033850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.718 5.718 3 C 0.450 3.550 4 N -0.503 5.503 5 C 0.213 3.787 6 C -0.196 4.196 7 C -0.007 4.007 8 C 0.552 3.448 9 O -0.577 6.577 10 N -0.614 5.614 11 C 0.124 3.876 12 C 0.189 3.811 13 O -0.563 6.563 14 C -0.544 4.544 15 H 0.058 0.942 16 C 0.031 3.969 17 N -0.922 5.922 18 Si 0.915 3.085 19 H -0.265 1.265 20 H -0.219 1.219 21 H -0.278 1.278 22 C 0.064 3.936 23 C -0.143 4.143 24 N 0.046 4.954 25 O -0.148 6.148 26 O -0.166 6.166 27 H 0.105 0.895 28 H 0.070 0.930 29 H 0.069 0.931 30 H 0.410 0.590 31 H 0.239 0.761 32 H 0.184 0.816 33 H 0.069 0.931 34 H 0.115 0.885 35 H 0.359 0.641 36 H 0.275 0.725 37 H 0.130 0.870 38 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.488 -8.085 0.789 22.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.347 5.347 3 C 0.211 3.789 4 N -0.222 5.222 5 C 0.053 3.947 6 C -0.219 4.219 7 C -0.018 4.018 8 C 0.342 3.658 9 O -0.459 6.459 10 N -0.345 5.345 11 C 0.003 3.997 12 C 0.148 3.852 13 O -0.375 6.375 14 C -0.582 4.582 15 H 0.076 0.924 16 C -0.171 4.171 17 N -0.559 5.559 18 Si 0.739 3.261 19 H -0.191 1.191 20 H -0.142 1.142 21 H -0.204 1.204 22 C -0.057 4.057 23 C -0.234 4.234 24 N 0.573 4.427 25 O -0.372 6.372 26 O -0.385 6.385 27 H 0.123 0.877 28 H 0.088 0.912 29 H 0.087 0.913 30 H 0.245 0.755 31 H 0.255 0.745 32 H 0.201 0.799 33 H 0.088 0.912 34 H 0.133 0.867 35 H 0.212 0.788 36 H 0.084 0.916 37 H 0.147 0.853 38 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -21.537 -8.586 1.030 23.208 hybrid contribution 1.607 0.006 -0.682 1.746 sum -19.931 -8.579 0.348 21.702 Atomic orbital electron populations 1.21873 0.75065 1.04609 1.03133 1.44819 1.09384 1.03096 1.77387 1.17875 0.82868 0.89790 0.88401 1.67651 1.37663 0.96655 1.20271 1.23794 0.91174 0.95961 0.83813 1.22997 0.96092 0.98009 1.04814 1.19972 0.93174 0.92574 0.96100 1.18133 0.87018 0.82931 0.77760 1.90834 1.68656 1.33547 1.52850 1.49970 1.11097 1.06618 1.66819 1.23481 0.82219 0.93339 1.00670 1.20532 0.92342 0.93055 0.79263 1.86497 1.88753 1.44346 1.17894 1.21250 1.28291 0.90302 1.18350 0.92409 1.25820 0.97215 0.94632 0.99387 1.69995 1.43875 0.99842 1.42145 0.86402 0.80437 0.79705 0.79574 1.19135 1.14238 1.20430 1.25018 1.00717 0.77404 1.02602 1.21362 0.91943 0.83652 1.26429 1.43229 0.98072 1.01586 0.99800 1.94492 1.56234 1.65553 1.20956 1.94511 1.57057 1.65794 1.21147 0.87673 0.91167 0.91274 0.75474 0.74484 0.79925 0.91207 0.86719 0.78832 0.91599 0.85274 0.87745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.04 10.72 127.77 1.37 2.41 16 2 N -0.72 -13.69 5.85 -366.60 -2.15 -15.84 16 3 C 0.45 10.78 7.48 133.06 0.99 11.77 16 4 N -0.50 -9.53 9.53 -193.40 -1.84 -11.37 16 5 C 0.21 3.09 11.16 84.63 0.94 4.04 16 6 C -0.20 -4.11 9.16 22.64 0.21 -3.90 16 7 C -0.01 -0.21 5.90 -19.90 -0.12 -0.32 16 8 C 0.55 21.72 8.01 86.88 0.70 22.42 16 9 O -0.58 -27.35 15.49 8.17 0.13 -27.22 16 10 N -0.61 -22.61 3.60 -842.65 -3.04 -25.64 16 11 C 0.12 4.90 8.23 86.49 0.71 5.61 16 12 C 0.19 7.73 1.06 -10.88 -0.01 7.72 16 13 O -0.56 -24.13 13.35 -148.98 -1.99 -26.12 16 14 C -0.54 -26.21 9.19 25.60 0.24 -25.98 16 15 H 0.06 3.11 8.06 -2.91 -0.02 3.09 16 16 C 0.03 1.51 5.47 84.65 0.46 1.98 16 17 N -0.92 -49.44 13.96 21.45 0.30 -49.14 16 18 Si 0.91 33.90 24.31 68.60 1.67 35.56 16 19 H -0.27 -9.84 7.05 99.48 0.70 -9.14 16 20 H -0.22 -6.67 5.16 99.48 0.51 -6.16 16 21 H -0.28 -10.21 7.11 99.48 0.71 -9.50 16 22 C 0.06 2.04 4.74 86.44 0.41 2.45 16 23 C -0.14 -4.50 6.21 36.89 0.23 -4.27 16 24 N 0.05 1.69 1.75 -45.24 -0.08 1.62 16 25 O -0.15 -5.69 18.89 22.33 0.42 -5.27 16 26 O -0.17 -6.50 19.14 20.34 0.39 -6.11 16 27 H 0.10 0.60 8.14 -2.39 -0.02 0.58 16 28 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 29 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.41 8.07 8.06 -92.70 -0.75 7.32 16 31 H 0.24 0.84 8.06 -2.91 -0.02 0.82 16 32 H 0.18 3.29 4.25 -2.91 -0.01 3.28 16 33 H 0.07 2.89 8.14 -2.39 -0.02 2.87 16 34 H 0.11 4.17 8.09 -2.39 -0.02 4.15 16 35 H 0.36 14.10 3.57 -74.05 -0.26 13.83 16 36 H 0.27 13.70 8.31 -92.71 -0.77 12.93 16 37 H 0.13 3.59 8.02 -2.39 -0.02 3.57 16 38 H 0.10 2.85 5.59 -2.39 -0.01 2.84 16 Total: -1.00 -73.60 327.10 -0.10 -73.71 By element: Atomic # 1 Polarization: 31.97 SS G_CDS: -0.05 Total: 31.92 kcal Atomic # 6 Polarization: 17.79 SS G_CDS: 6.13 Total: 23.92 kcal Atomic # 7 Polarization: -93.58 SS G_CDS: -6.80 Total: -100.38 kcal Atomic # 8 Polarization: -63.68 SS G_CDS: -1.05 Total: -64.73 kcal Atomic # 14 Polarization: 33.90 SS G_CDS: 1.67 Total: 35.56 kcal Total: -73.60 -0.10 -73.71 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000572614977.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.597 kcal (2) G-P(sol) polarization free energy of solvation -73.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.708 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds