Wall clock time and date at job start Fri Apr 10 2020 18:25:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46500 * 109.46829 * 2 1 4 4 C 1.36938 * 119.99528 * 273.91261 * 3 2 1 5 5 H 1.08000 * 119.99659 * 137.11068 * 4 3 2 6 6 C 1.38813 * 120.00323 * 317.11098 * 4 3 2 7 7 N 1.31623 * 119.99764 * 345.18487 * 6 4 3 8 8 Si 1.86794 * 120.00228 * 165.18348 * 6 4 3 9 9 H 1.48505 * 109.47357 * 59.99877 * 8 6 4 10 10 H 1.48497 * 109.47182 * 179.97438 * 8 6 4 11 11 H 1.48496 * 109.47212 * 300.00069 * 8 6 4 12 12 S 1.65598 * 120.00235 * 93.91681 * 3 2 1 13 13 O 1.42098 * 106.39926 * 196.56545 * 12 3 2 14 14 O 1.42102 * 106.39970 * 329.47841 * 12 3 2 15 15 C 1.76197 * 107.21928 * 83.02429 * 12 3 2 16 16 C 1.35364 * 126.97004 * 274.12952 * 15 12 3 17 17 N 1.33784 * 106.53414 * 179.88329 * 16 15 12 18 18 N 1.28600 * 109.06072 * 0.39549 * 17 16 15 19 19 N 1.28726 * 110.23590 * 359.75044 * 18 17 16 20 20 C 1.40245 * 125.94819 * 180.02562 * 19 18 17 21 21 C 1.38818 * 120.07045 * 131.33097 * 20 19 18 22 22 C 1.38130 * 119.93672 * 179.70395 * 21 20 19 23 23 C 1.38274 * 120.05995 * 0.57161 * 22 21 20 24 24 C 1.38274 * 120.13416 * 359.72922 * 23 22 21 25 25 C 1.38121 * 120.06328 * 359.97214 * 24 23 22 26 26 H 1.09000 * 109.47056 * 300.00148 * 1 2 3 27 27 H 1.08995 * 109.47064 * 60.00928 * 1 2 3 28 28 H 1.09001 * 109.46809 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47137 * 239.99301 * 2 1 3 30 30 H 1.09004 * 109.46971 * 119.99305 * 2 1 3 31 31 H 0.97001 * 119.99748 * 180.02562 * 7 6 4 32 32 H 1.07999 * 126.73575 * 359.97438 * 16 15 12 33 33 H 1.08001 * 120.03295 * 359.97438 * 21 20 19 34 34 H 1.07991 * 119.96827 * 180.31798 * 22 21 20 35 35 H 1.08007 * 119.93442 * 179.74677 * 23 22 21 36 36 H 1.08007 * 119.96832 * 179.97438 * 24 23 22 37 37 H 1.08006 * 120.03449 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1702 2.0537 -1.1832 5 1 1.8512 3.0822 -1.2645 6 6 2.7342 1.4133 -2.2781 7 7 3.3835 0.2800 -2.1151 8 14 2.5717 2.1598 -3.9826 9 1 3.1957 3.5073 -3.9945 10 1 3.2563 1.2891 -4.9717 11 1 1.1343 2.2769 -4.3367 12 16 2.3867 2.1293 1.4307 13 8 2.4454 3.5215 1.1521 14 8 1.5236 1.5685 2.4105 15 6 4.0216 1.6402 1.8692 16 6 4.3835 0.5279 2.5505 17 7 5.7169 0.5615 2.6535 18 7 6.1556 1.6271 2.0828 19 7 5.1765 2.3072 1.5970 20 6 5.2814 3.5236 0.9068 21 6 4.6200 3.6971 -0.3013 22 6 4.7202 4.8984 -0.9758 23 6 5.4881 5.9234 -0.4545 24 6 6.1531 5.7513 0.7455 25 6 6.0516 4.5545 1.4275 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5139 -0.8899 30 1 1.8934 -0.5137 0.8901 31 1 3.7779 -0.1673 -2.8802 32 1 3.7251 -0.2374 2.9342 33 1 4.0240 2.8951 -0.7113 34 1 4.2017 5.0357 -1.9131 35 1 5.5684 6.8604 -0.9856 36 1 6.7525 6.5536 1.1500 37 1 6.5710 4.4208 2.3650 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590591731.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:55 Heat of formation + Delta-G solvation = 66.310520 kcal Electronic energy + Delta-G solvation = -26549.532677 eV Core-core repulsion = 22842.985867 eV Total energy + Delta-G solvation = -3706.546810 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 322.089 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.80949 -38.87289 -36.36226 -36.04311 -34.60862 -34.06805 -32.33857 -31.02421 -30.41472 -29.53539 -29.39097 -25.12324 -23.85546 -23.05872 -21.90503 -21.76597 -21.07379 -18.98747 -18.31037 -17.13385 -16.72834 -16.08289 -15.93213 -15.75860 -15.15828 -14.72331 -14.48995 -14.18098 -13.71928 -13.51124 -13.17215 -12.96436 -12.76281 -12.61314 -12.28302 -11.90355 -11.62035 -11.45437 -11.27807 -11.19545 -11.02494 -10.96890 -10.86193 -10.79363 -10.73083 -10.59243 -10.20483 -10.13087 -9.95639 -9.40989 -9.18699 -8.65139 -8.38503 -8.14618 -6.91641 -4.60078 1.08427 1.46646 1.67333 2.03623 2.77118 2.89503 2.91178 2.96716 2.99548 3.70117 3.97854 4.19612 4.40624 4.78538 4.94243 5.08502 5.14504 5.30571 5.32222 5.58917 5.67196 5.86097 5.89746 5.91961 6.04730 6.19303 6.22662 6.30118 6.48188 6.52341 6.53819 6.68835 6.75196 6.79390 6.87549 6.95647 7.08893 7.31433 7.34054 7.95438 8.29670 8.80683 8.82502 10.00351 Molecular weight = 322.09amu Principal moments of inertia in cm(-1) A = 0.011045 B = 0.008623 C = 0.006133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2534.431742 B = 3246.521306 C = 4564.698934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.125 3.875 3 N -0.792 5.792 4 C -0.240 4.240 5 H 0.113 0.887 6 C 0.039 3.961 7 N -0.807 5.807 8 Si 0.921 3.079 9 H -0.260 1.260 10 H -0.277 1.277 11 H -0.262 1.262 12 S 2.523 3.477 13 O -0.970 6.970 14 O -0.986 6.986 15 C -0.543 4.543 16 C 0.029 3.971 17 N -0.284 5.284 18 N -0.072 5.072 19 N -0.181 5.181 20 C 0.100 3.900 21 C -0.066 4.066 22 C -0.105 4.105 23 C -0.104 4.104 24 C -0.125 4.125 25 C -0.095 4.095 26 H 0.053 0.947 27 H 0.059 0.941 28 H 0.052 0.948 29 H 0.103 0.897 30 H 0.051 0.949 31 H 0.284 0.716 32 H 0.194 0.806 33 H 0.170 0.830 34 H 0.134 0.866 35 H 0.126 0.874 36 H 0.129 0.871 37 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.521 4.492 -2.407 5.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.001 4.001 3 N -0.617 5.617 4 C -0.391 4.391 5 H 0.130 0.870 6 C -0.178 4.178 7 N -0.443 5.443 8 Si 0.744 3.256 9 H -0.184 1.184 10 H -0.202 1.202 11 H -0.186 1.186 12 S 2.618 3.382 13 O -0.959 6.959 14 O -0.975 6.975 15 C -0.746 4.746 16 C -0.130 4.130 17 N -0.148 5.148 18 N -0.051 5.051 19 N 0.029 4.971 20 C 0.011 3.989 21 C -0.086 4.086 22 C -0.124 4.124 23 C -0.123 4.123 24 C -0.144 4.144 25 C -0.115 4.115 26 H 0.072 0.928 27 H 0.078 0.922 28 H 0.070 0.930 29 H 0.121 0.879 30 H 0.070 0.930 31 H 0.095 0.905 32 H 0.211 0.789 33 H 0.187 0.813 34 H 0.152 0.848 35 H 0.144 0.856 36 H 0.146 0.854 37 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 1.773 4.744 -1.370 5.247 hybrid contribution -0.322 -0.171 -0.703 0.792 sum 1.450 4.573 -2.073 5.226 Atomic orbital electron populations 1.22148 0.97115 1.00644 1.02220 1.21270 0.92793 0.82748 1.03316 1.53677 1.65683 1.23126 1.19171 1.19840 1.34217 0.99871 0.85180 0.86978 1.26102 0.93496 0.96275 1.01960 1.69921 1.26042 1.14898 1.33443 0.86046 0.79848 0.79783 0.79892 1.18443 1.20167 1.18642 1.12467 0.73644 0.76342 0.75720 1.93389 1.86250 1.31982 1.84302 1.93382 1.62619 1.79444 1.62073 1.36926 1.17568 1.05274 1.14786 1.23341 0.92613 0.97558 0.99456 1.74944 1.10332 1.12004 1.17555 1.78101 1.15340 1.01031 1.10664 1.44181 1.03766 1.15143 1.34011 1.17641 1.04352 0.82728 0.94217 1.22156 0.94662 1.00669 0.91067 1.21015 0.98636 0.92225 1.00497 1.21290 0.96395 0.98913 0.95664 1.20862 1.01196 0.96501 0.95811 1.20906 0.98260 0.92190 1.00096 0.92753 0.92204 0.92952 0.87890 0.93007 0.90525 0.78873 0.81308 0.84819 0.85601 0.85352 0.85603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.84 10.22 37.16 0.38 -2.46 16 2 C 0.13 2.49 5.65 -4.04 -0.02 2.47 16 3 N -0.79 -17.22 2.78 -59.90 -0.17 -17.39 16 4 C -0.24 -5.15 6.09 -15.06 -0.09 -5.24 16 5 H 0.11 2.36 7.57 -52.49 -0.40 1.96 16 6 C 0.04 0.80 4.65 -17.43 -0.08 0.71 16 7 N -0.81 -17.54 11.40 55.49 0.63 -16.91 16 8 Si 0.92 16.02 29.58 -169.99 -5.03 10.99 16 9 H -0.26 -4.34 7.11 56.52 0.40 -3.94 16 10 H -0.28 -4.87 7.11 56.52 0.40 -4.47 16 11 H -0.26 -4.52 7.11 56.52 0.40 -4.12 16 12 S 2.52 57.78 5.14 -107.50 -0.55 57.22 16 13 O -0.97 -23.34 13.71 -57.17 -0.78 -24.12 16 14 O -0.99 -23.70 16.84 -57.17 -0.96 -24.66 16 15 C -0.54 -12.37 6.90 -16.68 -0.12 -12.49 16 16 C 0.03 0.62 11.89 -17.73 -0.21 0.41 16 17 N -0.28 -6.37 12.39 30.24 0.37 -5.99 16 18 N -0.07 -1.64 13.01 60.35 0.79 -0.85 16 19 N -0.18 -4.09 3.43 -9.69 -0.03 -4.12 16 20 C 0.10 2.09 5.47 -83.58 -0.46 1.63 16 21 C -0.07 -1.33 7.20 -39.41 -0.28 -1.62 16 22 C -0.10 -1.76 10.04 -39.61 -0.40 -2.16 16 23 C -0.10 -1.47 10.04 -39.55 -0.40 -1.87 16 24 C -0.13 -1.79 10.04 -39.61 -0.40 -2.19 16 25 C -0.09 -1.66 9.86 -39.41 -0.39 -2.04 16 26 H 0.05 1.00 7.82 -51.93 -0.41 0.59 16 27 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 28 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 29 H 0.10 2.12 5.62 -51.93 -0.29 1.83 16 30 H 0.05 0.99 7.84 -51.93 -0.41 0.58 16 31 H 0.28 5.82 8.31 -40.82 -0.34 5.48 16 32 H 0.19 3.50 8.06 -52.49 -0.42 3.08 16 33 H 0.17 3.69 3.53 -52.49 -0.19 3.50 16 34 H 0.13 1.95 8.06 -52.49 -0.42 1.53 16 35 H 0.13 1.31 8.06 -52.48 -0.42 0.89 16 36 H 0.13 1.38 8.06 -52.48 -0.42 0.95 16 37 H 0.13 2.04 8.06 -52.48 -0.42 1.62 16 LS Contribution 324.92 15.07 4.90 4.90 Total: -1.00 -28.21 324.92 -7.08 -35.30 By element: Atomic # 1 Polarization: 14.25 SS G_CDS: -3.78 Total: 10.47 kcal Atomic # 6 Polarization: -22.37 SS G_CDS: -2.46 Total: -24.83 kcal Atomic # 7 Polarization: -46.86 SS G_CDS: 1.59 Total: -45.26 kcal Atomic # 8 Polarization: -47.03 SS G_CDS: -1.75 Total: -48.78 kcal Atomic # 14 Polarization: 16.02 SS G_CDS: -5.03 Total: 10.99 kcal Atomic # 16 Polarization: 57.78 SS G_CDS: -0.55 Total: 57.22 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -28.21 -7.08 -35.30 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590591731.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.608 kcal (2) G-P(sol) polarization free energy of solvation -28.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.297 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds