Wall clock time and date at job start Fri Apr 10 2020 18:25:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46500 * 109.46829 * 2 1 4 4 C 1.36938 * 119.99528 * 273.91261 * 3 2 1 5 5 H 1.08000 * 119.99659 * 137.11068 * 4 3 2 6 6 C 1.38813 * 120.00323 * 317.11098 * 4 3 2 7 7 N 1.31623 * 119.99764 * 345.18487 * 6 4 3 8 8 Si 1.86794 * 120.00228 * 165.18348 * 6 4 3 9 9 H 1.48505 * 109.47357 * 59.99877 * 8 6 4 10 10 H 1.48497 * 109.47182 * 179.97438 * 8 6 4 11 11 H 1.48496 * 109.47212 * 300.00069 * 8 6 4 12 12 S 1.65598 * 120.00235 * 93.91681 * 3 2 1 13 13 O 1.42098 * 106.39926 * 196.56545 * 12 3 2 14 14 O 1.42102 * 106.39970 * 329.47841 * 12 3 2 15 15 C 1.76197 * 107.21928 * 83.02429 * 12 3 2 16 16 C 1.35364 * 126.97004 * 274.12952 * 15 12 3 17 17 N 1.33784 * 106.53414 * 179.88329 * 16 15 12 18 18 N 1.28600 * 109.06072 * 0.39549 * 17 16 15 19 19 N 1.28726 * 110.23590 * 359.75044 * 18 17 16 20 20 C 1.40245 * 125.94819 * 180.02562 * 19 18 17 21 21 C 1.38818 * 120.07045 * 131.33097 * 20 19 18 22 22 C 1.38130 * 119.93672 * 179.70395 * 21 20 19 23 23 C 1.38274 * 120.05995 * 0.57161 * 22 21 20 24 24 C 1.38274 * 120.13416 * 359.72922 * 23 22 21 25 25 C 1.38121 * 120.06328 * 359.97214 * 24 23 22 26 26 H 1.09000 * 109.47056 * 300.00148 * 1 2 3 27 27 H 1.08995 * 109.47064 * 60.00928 * 1 2 3 28 28 H 1.09001 * 109.46809 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47137 * 239.99301 * 2 1 3 30 30 H 1.09004 * 109.46971 * 119.99305 * 2 1 3 31 31 H 0.97001 * 119.99748 * 180.02562 * 7 6 4 32 32 H 1.07999 * 126.73575 * 359.97438 * 16 15 12 33 33 H 1.08001 * 120.03295 * 359.97438 * 21 20 19 34 34 H 1.07991 * 119.96827 * 180.31798 * 22 21 20 35 35 H 1.08007 * 119.93442 * 179.74677 * 23 22 21 36 36 H 1.08007 * 119.96832 * 179.97438 * 24 23 22 37 37 H 1.08006 * 120.03449 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1702 2.0537 -1.1832 5 1 1.8512 3.0822 -1.2645 6 6 2.7342 1.4133 -2.2781 7 7 3.3835 0.2800 -2.1151 8 14 2.5717 2.1598 -3.9826 9 1 3.1957 3.5073 -3.9945 10 1 3.2563 1.2891 -4.9717 11 1 1.1343 2.2769 -4.3367 12 16 2.3867 2.1293 1.4307 13 8 2.4454 3.5215 1.1521 14 8 1.5236 1.5685 2.4105 15 6 4.0216 1.6402 1.8692 16 6 4.3835 0.5279 2.5505 17 7 5.7169 0.5615 2.6535 18 7 6.1556 1.6271 2.0828 19 7 5.1765 2.3072 1.5970 20 6 5.2814 3.5236 0.9068 21 6 4.6200 3.6971 -0.3013 22 6 4.7202 4.8984 -0.9758 23 6 5.4881 5.9234 -0.4545 24 6 6.1531 5.7513 0.7455 25 6 6.0516 4.5545 1.4275 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5139 -0.8899 30 1 1.8934 -0.5137 0.8901 31 1 3.7779 -0.1673 -2.8802 32 1 3.7251 -0.2374 2.9342 33 1 4.0240 2.8951 -0.7113 34 1 4.2017 5.0357 -1.9131 35 1 5.5684 6.8604 -0.9856 36 1 6.7525 6.5536 1.1500 37 1 6.5710 4.4208 2.3650 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590591731.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:54 Heat of formation + Delta-G solvation = 47.946717 kcal Electronic energy + Delta-G solvation = -26550.328991 eV Core-core repulsion = 22842.985867 eV Total energy + Delta-G solvation = -3707.343124 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 322.089 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -44.45810 -40.18913 -38.00686 -37.75203 -36.34436 -35.58926 -34.00123 -32.54825 -31.84109 -31.06088 -30.81873 -26.77349 -25.35555 -24.55971 -23.47225 -23.19299 -22.57628 -20.56913 -19.87826 -18.80746 -18.35842 -17.68777 -17.44113 -17.21129 -16.79477 -16.28197 -15.96736 -15.55803 -15.26371 -14.96081 -14.51956 -14.46719 -14.34347 -13.99237 -13.81774 -13.58746 -13.11537 -12.93370 -12.75700 -12.68184 -12.64874 -12.56665 -12.40801 -12.29568 -12.24526 -12.04444 -11.89257 -11.64552 -11.54368 -10.99138 -10.86701 -9.94594 -9.80470 -9.73958 -8.56643 -6.28950 -0.40215 -0.17955 0.38707 0.53102 1.21377 1.23828 1.51372 1.57144 1.64672 2.20882 2.54267 2.69933 2.77884 3.10960 3.31639 3.67051 3.78945 3.92361 4.10170 4.22981 4.33778 4.34923 4.41742 4.58183 4.60331 4.70207 4.76935 4.87546 5.00056 5.04988 5.20647 5.26431 5.31977 5.32795 5.50317 5.57321 5.58425 5.69662 5.99145 6.27908 6.59916 7.11904 7.14575 8.34613 Molecular weight = 322.09amu Principal moments of inertia in cm(-1) A = 0.011045 B = 0.008623 C = 0.006133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2534.431742 B = 3246.521306 C = 4564.698934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.119 3.881 3 N -0.788 5.788 4 C -0.229 4.229 5 H 0.115 0.885 6 C 0.013 3.987 7 N -0.821 5.821 8 Si 0.975 3.025 9 H -0.244 1.244 10 H -0.277 1.277 11 H -0.254 1.254 12 S 2.494 3.506 13 O -0.990 6.990 14 O -1.011 7.011 15 C -0.558 4.558 16 C 0.020 3.980 17 N -0.298 5.298 18 N -0.089 5.089 19 N -0.178 5.178 20 C 0.057 3.943 21 C -0.094 4.094 22 C -0.115 4.115 23 C -0.088 4.088 24 C -0.112 4.112 25 C -0.109 4.109 26 H 0.042 0.958 27 H 0.062 0.938 28 H 0.082 0.918 29 H 0.097 0.903 30 H 0.053 0.947 31 H 0.290 0.710 32 H 0.217 0.783 33 H 0.148 0.852 34 H 0.154 0.846 35 H 0.175 0.825 36 H 0.173 0.827 37 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.636 6.360 -4.760 7.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.007 4.007 3 N -0.611 5.611 4 C -0.385 4.385 5 H 0.133 0.867 6 C -0.204 4.204 7 N -0.458 5.458 8 Si 0.795 3.205 9 H -0.168 1.168 10 H -0.202 1.202 11 H -0.178 1.178 12 S 2.593 3.407 13 O -0.979 6.979 14 O -1.000 7.000 15 C -0.761 4.761 16 C -0.139 4.139 17 N -0.162 5.162 18 N -0.068 5.068 19 N 0.031 4.969 20 C -0.032 4.032 21 C -0.115 4.115 22 C -0.133 4.133 23 C -0.105 4.105 24 C -0.131 4.131 25 C -0.129 4.129 26 H 0.061 0.939 27 H 0.081 0.919 28 H 0.100 0.900 29 H 0.115 0.885 30 H 0.071 0.929 31 H 0.101 0.899 32 H 0.234 0.766 33 H 0.165 0.835 34 H 0.171 0.829 35 H 0.193 0.807 36 H 0.190 0.810 37 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 1.894 6.609 -3.634 7.776 hybrid contribution -0.320 -0.702 -0.176 0.791 sum 1.574 5.907 -3.810 7.203 Atomic orbital electron populations 1.22101 0.95138 1.02481 1.01730 1.21437 0.94412 0.81773 1.03038 1.54038 1.64294 1.23758 1.18964 1.20220 1.33128 1.00350 0.84764 0.86730 1.26867 0.92402 0.96141 1.04958 1.69994 1.25543 1.15448 1.34810 0.85223 0.80252 0.79751 0.75303 1.16753 1.20216 1.17834 1.14581 0.73610 0.76392 0.76159 1.93309 1.86515 1.33660 1.84448 1.93301 1.63726 1.79537 1.63404 1.37203 1.18070 1.05781 1.15034 1.23787 0.92625 0.98108 0.99378 1.74887 1.10825 1.12294 1.18166 1.78007 1.15871 1.01449 1.11522 1.44412 1.03431 1.15569 1.33444 1.18149 1.06793 0.82993 0.95270 1.22132 0.95721 1.01811 0.91799 1.21389 0.99177 0.91644 1.01120 1.21839 0.93849 0.99695 0.95159 1.21418 1.00366 0.95965 0.95311 1.21205 0.98082 0.92852 1.00763 0.93926 0.91905 0.89968 0.88510 0.92901 0.89943 0.76629 0.83454 0.82853 0.80747 0.80962 0.85340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.34 10.22 71.98 0.74 -4.61 16 2 C 0.12 4.78 5.65 86.38 0.49 5.26 16 3 N -0.79 -34.71 2.78 -343.43 -0.95 -35.67 16 4 C -0.23 -9.75 6.09 84.03 0.51 -9.23 16 5 H 0.12 4.77 7.57 -2.91 -0.02 4.75 16 6 C 0.01 0.50 4.65 84.86 0.39 0.90 16 7 N -0.82 -35.21 11.40 21.65 0.25 -34.96 16 8 Si 0.97 30.64 29.58 68.60 2.03 32.67 16 9 H -0.24 -7.06 7.11 99.48 0.71 -6.36 16 10 H -0.28 -8.76 7.11 99.48 0.71 -8.05 16 11 H -0.25 -7.74 7.11 99.48 0.71 -7.03 16 12 S 2.49 118.29 5.14 -56.49 -0.29 118.00 16 13 O -0.99 -49.16 13.71 -128.00 -1.76 -50.92 16 14 O -1.01 -50.54 16.84 -128.00 -2.16 -52.69 16 15 C -0.56 -26.51 6.90 83.36 0.58 -25.93 16 16 C 0.02 0.90 11.89 83.73 1.00 1.90 16 17 N -0.30 -13.86 12.39 -58.24 -0.72 -14.59 16 18 N -0.09 -4.22 13.01 37.02 0.48 -3.73 16 19 N -0.18 -8.35 3.43 -184.58 -0.63 -8.98 16 20 C 0.06 2.41 5.47 38.07 0.21 2.61 16 21 C -0.09 -3.83 7.20 22.38 0.16 -3.67 16 22 C -0.11 -3.58 10.04 22.25 0.22 -3.36 16 23 C -0.09 -2.10 10.04 22.29 0.22 -1.88 16 24 C -0.11 -2.84 10.04 22.25 0.22 -2.61 16 25 C -0.11 -3.75 9.86 22.38 0.22 -3.53 16 26 H 0.04 1.56 7.82 -2.39 -0.02 1.54 16 27 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 28 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 29 H 0.10 3.97 5.62 -2.39 -0.01 3.96 16 30 H 0.05 2.07 7.84 -2.39 -0.02 2.05 16 31 H 0.29 11.61 8.31 -92.71 -0.77 10.84 16 32 H 0.22 8.17 8.06 -2.91 -0.02 8.14 16 33 H 0.15 6.52 3.53 -2.91 -0.01 6.51 16 34 H 0.15 4.01 8.06 -2.91 -0.02 3.98 16 35 H 0.18 2.51 8.06 -2.91 -0.02 2.49 16 36 H 0.17 2.80 8.06 -2.91 -0.02 2.77 16 37 H 0.13 4.18 8.06 -2.91 -0.02 4.16 16 Total: -1.00 -63.23 324.92 2.32 -60.91 By element: Atomic # 1 Polarization: 32.99 SS G_CDS: 1.11 Total: 34.10 kcal Atomic # 6 Polarization: -49.11 SS G_CDS: 4.96 Total: -44.15 kcal Atomic # 7 Polarization: -96.34 SS G_CDS: -1.58 Total: -97.93 kcal Atomic # 8 Polarization: -99.70 SS G_CDS: -3.91 Total: -103.61 kcal Atomic # 14 Polarization: 30.64 SS G_CDS: 2.03 Total: 32.67 kcal Atomic # 16 Polarization: 118.29 SS G_CDS: -0.29 Total: 118.00 kcal Total: -63.23 2.32 -60.91 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590591731.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.858 kcal (2) G-P(sol) polarization free energy of solvation -63.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.911 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds