Wall clock time and date at job start Fri Apr 10 2020 18:26:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30821 * 1 3 3 Si 1.86799 * 120.00200 * 2 1 4 4 H 1.48505 * 109.46893 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.46806 * 299.99660 * 3 2 1 6 6 H 1.48496 * 109.47299 * 59.99705 * 3 2 1 7 7 C 1.39953 * 119.99648 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99631 * 197.86436 * 7 2 1 9 9 C 1.41397 * 119.99967 * 17.87241 * 7 2 1 10 10 C 1.40714 * 120.24377 * 24.37746 * 9 7 2 11 11 C 1.37611 * 119.74113 * 180.02562 * 10 9 7 12 12 C 1.38637 * 120.25426 * 0.02562 * 11 10 9 13 13 C 1.50696 * 119.75313 * 179.97438 * 12 11 10 14 14 S 1.81397 * 109.47408 * 89.99810 * 13 12 11 15 15 O 1.42109 * 110.54142 * 68.37460 * 14 13 12 16 16 O 1.42094 * 110.54427 * 291.62872 * 14 13 12 17 17 N 1.65596 * 104.45352 * 179.97438 * 14 13 12 18 18 C 1.46508 * 119.99526 * 64.99808 * 17 14 13 19 19 H 1.09001 * 115.51612 * 359.42038 * 18 17 14 20 20 C 1.53002 * 117.44378 * 213.99554 * 18 17 14 21 21 H 1.08997 * 119.52410 * 4.14145 * 20 18 17 22 22 C 1.54334 * 118.15203 * 160.59863 * 20 18 17 23 23 N 1.48559 * 104.53473 * 87.33275 * 22 20 18 24 24 C 1.48565 * 104.22074 * 320.52139 * 23 22 20 25 25 C 1.53004 * 117.43884 * 144.84080 * 18 17 14 26 26 H 1.08997 * 119.52805 * 354.30797 * 25 18 17 27 27 C 1.38639 * 120.49645 * 0.24960 * 12 11 10 28 28 C 1.37618 * 120.24813 * 359.45060 * 27 12 11 29 29 H 0.97008 * 119.99890 * 0.02562 * 1 2 3 30 30 H 1.07993 * 120.12768 * 0.02562 * 10 9 7 31 31 H 1.08005 * 119.87434 * 180.02562 * 11 10 9 32 32 H 1.08998 * 109.47187 * 329.99880 * 13 12 11 33 33 H 1.09005 * 109.47104 * 210.00165 * 13 12 11 34 34 H 0.96993 * 120.00249 * 245.00196 * 17 14 13 35 35 H 1.08999 * 110.43911 * 328.57581 * 22 20 18 36 36 H 1.09002 * 110.44412 * 206.09048 * 22 20 18 37 37 H 1.00903 * 111.00502 * 200.96686 * 23 22 20 38 38 H 1.09003 * 110.40973 * 280.70865 * 24 23 22 39 39 H 1.09001 * 110.51481 * 158.31681 * 24 23 22 40 40 H 1.08001 * 119.87534 * 179.70618 * 27 12 11 41 41 H 1.07994 * 120.12714 * 180.27031 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.7023 1.3462 -0.0006 5 1 1.8835 2.3963 -1.2125 6 1 1.8835 2.3964 1.2124 7 6 2.0079 -1.2121 0.0005 8 1 3.0488 -1.2345 0.2875 9 6 1.3520 -2.4072 -0.3747 10 6 0.2209 -2.3625 -1.2106 11 6 -0.4098 -3.5319 -1.5689 12 6 0.0649 -4.7507 -1.1093 13 6 -0.6348 -6.0244 -1.5083 14 16 0.0949 -6.6601 -3.0426 15 8 1.4229 -7.1110 -2.8137 16 8 -0.2094 -5.8010 -4.1328 17 7 -0.7562 -8.0441 -3.3625 18 6 -2.1855 -7.9692 -3.6754 19 1 -2.6160 -6.9678 -3.6679 20 6 -3.0727 -9.1218 -3.2006 21 1 -2.6403 -9.9180 -2.5948 22 6 -4.5932 -8.8770 -3.1009 23 7 -5.1112 -9.1921 -4.4571 24 6 -4.0836 -8.6408 -5.3776 25 6 -2.7368 -8.9662 -4.6967 26 1 -2.0512 -9.6290 -5.2246 27 6 1.1751 -4.8062 -0.2808 28 6 1.8253 -3.6499 0.0855 29 1 -0.4850 0.8401 -0.0004 30 1 -0.1508 -1.4142 -1.5694 31 1 -1.2779 -3.5002 -2.2107 32 1 -1.6942 -5.8228 -1.6662 33 1 -0.5199 -6.7653 -0.7171 34 1 -0.3085 -8.9043 -3.3427 35 1 -4.7954 -7.8359 -2.8492 36 1 -5.0381 -9.5414 -2.3602 37 1 -6.0075 -8.7553 -4.6125 38 1 -4.2061 -7.5627 -5.4821 39 1 -4.1440 -9.1257 -6.3520 40 1 1.5335 -5.7608 0.0753 41 1 2.6925 -3.6957 0.7274 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592390329.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:11 Heat of formation + Delta-G solvation = -44.823983 kcal Electronic energy + Delta-G solvation = -24318.702255 eV Core-core repulsion = 20710.876635 eV Total energy + Delta-G solvation = -3607.825620 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 322.114 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.76661 -39.59527 -38.13909 -36.99190 -35.96387 -35.81059 -33.22718 -32.03638 -31.28993 -29.55312 -29.29071 -25.99958 -24.45785 -23.02619 -22.27028 -21.93674 -21.04361 -20.40079 -19.31040 -18.65502 -18.02382 -17.48180 -17.27989 -17.04151 -16.37972 -16.03852 -15.68118 -15.54799 -14.97636 -14.70152 -14.41206 -14.05089 -13.91696 -13.69789 -13.62139 -13.51894 -13.45205 -13.26414 -13.16608 -13.10002 -12.77722 -12.70626 -12.60845 -12.55825 -12.33304 -12.17798 -11.82827 -11.58992 -11.35958 -11.08023 -11.02915 -10.06454 -9.51794 -9.48233 -9.28627 -8.72892 -6.41672 -0.81012 0.86295 1.05923 1.37551 1.47754 1.53138 1.72610 2.17492 2.55577 2.62805 2.85458 3.18054 3.33303 3.54297 3.64199 3.71447 3.74451 3.90213 3.96740 4.08040 4.17059 4.35135 4.42763 4.50378 4.53321 4.69313 4.72048 4.95340 4.98102 5.02878 5.07723 5.15706 5.24442 5.25160 5.33451 5.60155 5.65608 5.82540 5.99102 6.01420 6.03367 6.27183 6.39269 6.59658 6.83952 6.91742 8.23672 Molecular weight = 322.11amu Principal moments of inertia in cm(-1) A = 0.023439 B = 0.002788 C = 0.002649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.297450 B =10038.887885 C =10568.033323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.814 5.814 2 C 0.035 3.965 3 Si 0.985 3.015 4 H -0.258 1.258 5 H -0.264 1.264 6 H -0.262 1.262 7 C -0.489 4.489 8 H 0.081 0.919 9 C 0.085 3.915 10 C -0.194 4.194 11 C -0.090 4.090 12 C -0.234 4.234 13 C -0.519 4.519 14 S 2.604 3.396 15 O -0.994 6.994 16 O -0.995 6.995 17 N -1.080 6.080 18 C 0.099 3.901 19 H 0.132 0.868 20 C -0.158 4.158 21 H 0.133 0.867 22 C 0.060 3.940 23 N -0.673 5.673 24 C 0.061 3.939 25 C -0.176 4.176 26 H 0.124 0.876 27 C -0.076 4.076 28 C -0.246 4.246 29 H 0.292 0.708 30 H 0.107 0.893 31 H 0.115 0.885 32 H 0.151 0.849 33 H 0.158 0.842 34 H 0.425 0.575 35 H 0.054 0.946 36 H 0.100 0.900 37 H 0.350 0.650 38 H 0.048 0.952 39 H 0.094 0.906 40 H 0.126 0.874 41 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.305 -14.718 -5.115 18.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.439 5.439 2 C -0.182 4.182 3 Si 0.805 3.195 4 H -0.182 1.182 5 H -0.188 1.188 6 H -0.187 1.187 7 C -0.518 4.518 8 H 0.099 0.901 9 C 0.082 3.918 10 C -0.214 4.214 11 C -0.110 4.110 12 C -0.238 4.238 13 C -0.650 4.650 14 S 2.703 3.297 15 O -0.984 6.984 16 O -0.985 6.985 17 N -0.836 5.836 18 C -0.010 4.010 19 H 0.150 0.850 20 C -0.179 4.179 21 H 0.151 0.849 22 C -0.069 4.069 23 N -0.304 5.304 24 C -0.069 4.069 25 C -0.197 4.197 26 H 0.142 0.858 27 C -0.096 4.096 28 C -0.266 4.266 29 H 0.103 0.897 30 H 0.125 0.875 31 H 0.133 0.867 32 H 0.169 0.831 33 H 0.176 0.824 34 H 0.261 0.739 35 H 0.072 0.928 36 H 0.118 0.882 37 H 0.167 0.833 38 H 0.067 0.933 39 H 0.113 0.887 40 H 0.144 0.856 41 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -9.709 -14.843 -5.733 18.640 hybrid contribution 0.093 1.388 0.604 1.516 sum -9.616 -13.455 -5.130 17.315 Atomic orbital electron populations 1.69859 1.09064 1.30966 1.33969 1.26840 0.95571 1.04730 0.91049 0.85116 0.79418 0.75846 0.79117 1.18158 1.18832 1.18673 1.19990 0.98589 0.92399 1.40782 0.90129 1.18099 0.91662 0.93314 0.88755 1.21328 1.00384 0.97285 1.02392 1.20928 0.98851 0.92467 0.98724 1.18529 1.02166 0.92111 1.11032 1.28977 1.11474 1.05112 1.19460 1.05394 0.73755 0.73131 0.77398 1.93511 1.36859 1.80529 1.87502 1.93509 1.85177 1.67695 1.52099 1.54982 1.17655 1.25037 1.85912 1.21637 0.79811 0.96935 1.02628 0.85009 1.24023 0.94885 1.01239 0.97734 0.84949 1.22529 0.91471 1.00602 0.92288 1.63852 1.05453 1.58678 1.02372 1.22489 0.88879 0.98285 0.97208 1.23947 0.99378 1.03751 0.92630 0.85834 1.20889 0.94666 0.97776 0.96234 1.21234 1.04607 0.92984 1.07756 0.89713 0.87524 0.86680 0.83107 0.82428 0.73920 0.92811 0.88197 0.83317 0.93345 0.88740 0.85612 0.87670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -41.54 10.95 21.83 0.24 -41.30 16 2 C 0.03 1.71 5.14 85.26 0.44 2.15 16 3 Si 0.98 37.45 29.60 68.60 2.03 39.48 16 4 H -0.26 -9.68 7.11 99.48 0.71 -8.97 16 5 H -0.26 -9.67 7.11 99.48 0.71 -8.97 16 6 H -0.26 -9.43 7.11 99.48 0.71 -8.72 16 7 C -0.49 -26.19 9.06 23.46 0.21 -25.97 16 8 H 0.08 4.16 7.91 -2.91 -0.02 4.13 16 9 C 0.08 4.60 5.58 -21.29 -0.12 4.48 16 10 C -0.19 -10.27 8.70 22.73 0.20 -10.08 16 11 C -0.09 -4.15 9.67 22.22 0.21 -3.94 16 12 C -0.23 -9.64 5.16 -19.67 -0.10 -9.75 16 13 C -0.52 -14.80 6.19 71.23 0.44 -14.35 16 14 S 2.60 80.29 5.42 -56.49 -0.31 79.98 16 15 O -0.99 -37.24 18.08 -127.65 -2.31 -39.55 16 16 O -1.00 -38.24 17.82 -127.65 -2.27 -40.51 16 17 N -1.08 -22.46 5.92 -169.36 -1.00 -23.47 16 18 C 0.10 1.80 5.89 44.99 0.27 2.07 16 19 H 0.13 2.38 8.11 -2.39 -0.02 2.36 16 20 C -0.16 -2.25 7.04 -9.96 -0.07 -2.32 16 21 H 0.13 1.62 8.14 -2.39 -0.02 1.60 16 22 C 0.06 0.76 7.27 86.43 0.63 1.39 16 23 N -0.67 -9.03 7.62 -500.92 -3.82 -12.85 16 24 C 0.06 0.88 7.27 86.45 0.63 1.51 16 25 C -0.18 -2.87 7.05 -9.94 -0.07 -2.94 16 26 H 0.12 1.94 8.14 -2.39 -0.02 1.92 16 27 C -0.08 -3.33 9.67 22.22 0.21 -3.11 16 28 C -0.25 -12.16 9.80 22.73 0.22 -11.93 16 29 H 0.29 13.30 8.30 -92.70 -0.77 12.54 16 30 H 0.11 5.85 6.16 -2.91 -0.02 5.83 16 31 H 0.12 4.66 8.06 -2.91 -0.02 4.64 16 32 H 0.15 3.42 8.08 -2.39 -0.02 3.40 16 33 H 0.16 3.47 8.08 -2.39 -0.02 3.45 16 34 H 0.42 7.15 8.92 -96.75 -0.86 6.29 16 35 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 36 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 37 H 0.35 3.52 8.92 -89.69 -0.80 2.72 16 38 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 39 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 40 H 0.13 4.60 8.06 -2.91 -0.02 4.58 16 41 H 0.11 4.86 8.06 -2.91 -0.02 4.84 16 Total: -1.00 -70.91 357.70 -4.94 -75.84 By element: Atomic # 1 Polarization: 35.77 SS G_CDS: -0.60 Total: 35.17 kcal Atomic # 6 Polarization: -75.90 SS G_CDS: 3.10 Total: -72.80 kcal Atomic # 7 Polarization: -73.03 SS G_CDS: -4.58 Total: -77.62 kcal Atomic # 8 Polarization: -75.48 SS G_CDS: -4.58 Total: -80.06 kcal Atomic # 14 Polarization: 37.45 SS G_CDS: 2.03 Total: 39.48 kcal Atomic # 16 Polarization: 80.29 SS G_CDS: -0.31 Total: 79.98 kcal Total: -70.91 -4.94 -75.84 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592390329.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.017 kcal (2) G-P(sol) polarization free energy of solvation -70.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds