Wall clock time and date at job start Fri Apr 10 2020 18:26:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08998 * 109.47268 * 2 1 4 4 C 1.50693 * 109.46926 * 240.00001 * 2 1 3 5 5 H 1.07999 * 120.00010 * 239.99988 * 4 2 1 6 6 C 1.37885 * 120.00235 * 60.00296 * 4 2 1 7 7 N 1.31513 * 120.00048 * 180.02562 * 6 4 2 8 8 Si 1.86797 * 119.99568 * 0.27083 * 6 4 2 9 9 H 1.48503 * 109.47245 * 269.72747 * 8 6 4 10 10 H 1.48494 * 109.47387 * 29.72816 * 8 6 4 11 11 H 1.48501 * 109.46801 * 149.72599 * 8 6 4 12 12 N 1.46505 * 109.46887 * 119.99952 * 2 1 3 13 13 C 1.46501 * 119.99795 * 60.00407 * 12 2 1 14 14 S 1.65595 * 120.00042 * 239.99658 * 12 2 1 15 15 O 1.42098 * 106.40458 * 203.54458 * 14 12 2 16 16 O 1.42104 * 106.40189 * 336.46757 * 14 12 2 17 17 N 1.65603 * 107.21689 * 90.00082 * 14 12 2 18 18 C 1.47152 * 120.97758 * 53.52808 * 17 14 12 19 19 C 1.53305 * 108.38145 * 129.44209 * 18 17 14 20 20 O 1.42956 * 109.22396 * 52.30286 * 19 18 17 21 21 C 1.42967 * 114.16536 * 297.41933 * 20 19 18 22 22 C 1.47151 * 120.98473 * 233.24404 * 17 14 12 23 23 H 1.08999 * 109.67872 * 110.83860 * 22 17 14 24 24 C 1.50693 * 109.68161 * 350.28604 * 22 17 14 25 25 O 1.20827 * 120.00209 * 303.33174 * 24 22 17 26 26 O 1.34232 * 120.00350 * 123.33587 * 24 22 17 27 27 H 1.09002 * 109.47140 * 299.99898 * 1 2 3 28 28 H 1.08998 * 109.47260 * 60.00023 * 1 2 3 29 29 H 1.09003 * 109.46926 * 180.02562 * 1 2 3 30 30 H 0.96998 * 119.99825 * 179.97438 * 7 6 4 31 31 H 1.08999 * 109.47083 * 89.99436 * 13 12 2 32 32 H 1.09008 * 109.46859 * 209.99739 * 13 12 2 33 33 H 1.09000 * 109.47072 * 329.99137 * 13 12 2 34 34 H 1.08997 * 109.68423 * 249.16418 * 18 17 14 35 35 H 1.08998 * 109.68420 * 9.72087 * 18 17 14 36 36 H 1.09001 * 109.50823 * 172.22823 * 19 18 17 37 37 H 1.09004 * 109.51039 * 292.32192 * 19 18 17 38 38 H 1.08998 * 109.50934 * 182.50673 * 21 20 19 39 39 H 1.09004 * 109.51074 * 302.60616 * 21 20 19 40 40 H 0.96697 * 116.99775 * 179.97438 * 26 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5885 -1.1313 6 6 1.6993 -0.2393 -2.4828 7 7 2.1372 -0.8596 -3.5566 8 14 0.6317 1.2839 -2.6541 9 1 -0.7976 0.8837 -2.7033 10 1 0.8553 2.1786 -1.4902 11 1 0.9886 2.0003 -3.9049 12 7 2.0184 -0.6906 1.1962 13 6 1.6644 -2.0932 1.4280 14 16 2.9704 0.1141 2.2862 15 8 3.7119 -0.8790 2.9814 16 8 3.5794 1.1829 1.5748 17 7 1.9607 0.8090 3.3998 18 6 0.9595 0.0059 4.1195 19 6 1.1007 0.2885 5.6197 20 8 1.0585 1.7006 5.8386 21 6 2.1271 2.4210 5.2197 22 6 2.0424 2.2466 3.7033 23 1 1.1528 2.7521 3.3277 24 6 3.2711 2.8327 3.0571 25 8 4.3609 2.3730 3.3034 26 8 3.1548 3.8657 2.2078 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.9026 -0.5284 -4.4375 31 1 2.4157 -2.7377 0.9716 32 1 1.6238 -2.2853 2.5002 33 1 0.6904 -2.3002 0.9847 34 1 -0.0409 0.2820 3.7865 35 1 1.1316 -1.0532 3.9277 36 1 0.2818 -0.1881 6.1585 37 1 2.0511 -0.1080 5.9769 38 1 2.0467 3.4786 5.4709 39 1 3.0817 2.0337 5.5761 40 1 3.9712 4.2079 1.8185 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593269917.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:41 Heat of formation + Delta-G solvation = -172.455269 kcal Electronic energy + Delta-G solvation = -28322.471192 eV Core-core repulsion = 24265.969049 eV Total energy + Delta-G solvation = -4056.502142 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.112 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.68040 -39.05235 -36.91823 -36.59086 -36.03813 -35.38858 -34.98397 -32.61165 -32.04822 -30.13807 -27.61130 -25.95006 -25.52407 -25.08354 -22.58153 -21.50018 -20.81741 -18.85679 -18.25266 -17.62084 -17.34666 -17.01667 -16.48394 -16.30176 -15.99052 -15.57698 -15.49636 -15.11797 -14.70918 -14.57536 -13.93822 -13.74055 -13.43777 -13.09352 -12.84074 -12.51609 -12.38641 -12.28033 -12.20365 -12.04011 -11.76427 -11.71449 -11.59486 -11.35812 -11.24498 -11.07164 -10.83945 -10.74536 -10.49844 -10.29744 -10.22159 -9.66510 -9.48761 -9.14231 -8.69563 -8.26117 -6.18009 -4.19310 0.74076 2.15295 2.70922 3.08899 3.17284 3.30200 3.31938 3.55023 3.78094 4.29314 4.33470 4.52789 4.65000 4.73825 4.82325 4.98085 5.10729 5.15109 5.18391 5.23540 5.36446 5.37335 5.60467 5.70080 5.87786 6.04437 6.13468 6.18341 6.22581 6.38769 6.45575 6.66057 6.71374 6.72257 7.17446 7.26402 7.54599 7.93616 8.40443 8.85680 9.41086 10.94852 Molecular weight = 322.11amu Principal moments of inertia in cm(-1) A = 0.017023 B = 0.005863 C = 0.005398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1644.473506 B = 4774.353532 C = 5186.134708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.241 3.759 3 H 0.057 0.943 4 C -0.524 4.524 5 H 0.082 0.918 6 C 0.075 3.925 7 N -0.892 5.892 8 Si 0.881 3.119 9 H -0.276 1.276 10 H -0.264 1.264 11 H -0.293 1.293 12 N -0.980 5.980 13 C 0.104 3.896 14 S 2.780 3.220 15 O -0.975 6.975 16 O -0.959 6.959 17 N -1.008 6.008 18 C 0.092 3.908 19 C 0.045 3.955 20 O -0.367 6.367 21 C 0.064 3.936 22 C 0.131 3.869 23 H 0.114 0.886 24 C 0.491 3.509 25 O -0.507 6.507 26 O -0.500 6.500 27 H 0.032 0.968 28 H 0.051 0.949 29 H 0.060 0.940 30 H 0.266 0.734 31 H 0.058 0.942 32 H 0.050 0.950 33 H 0.077 0.923 34 H 0.084 0.916 35 H 0.095 0.905 36 H 0.111 0.889 37 H 0.064 0.936 38 H 0.114 0.886 39 H 0.071 0.929 40 H 0.418 0.582 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.595 5.548 17.350 19.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.136 3.864 3 H 0.074 0.926 4 C -0.563 4.563 5 H 0.100 0.900 6 C -0.128 4.128 7 N -0.530 5.530 8 Si 0.711 3.289 9 H -0.203 1.203 10 H -0.188 1.188 11 H -0.220 1.220 12 N -0.823 5.823 13 C -0.042 4.042 14 S 2.790 3.210 15 O -0.958 6.958 16 O -0.942 6.942 17 N -0.849 5.849 18 C -0.033 4.033 19 C -0.033 4.033 20 O -0.285 6.285 21 C -0.015 4.015 22 C 0.022 3.978 23 H 0.132 0.868 24 C 0.332 3.668 25 O -0.396 6.396 26 O -0.311 6.311 27 H 0.051 0.949 28 H 0.069 0.931 29 H 0.079 0.921 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.069 0.931 33 H 0.096 0.904 34 H 0.103 0.897 35 H 0.114 0.886 36 H 0.129 0.871 37 H 0.082 0.918 38 H 0.132 0.868 39 H 0.089 0.911 40 H 0.278 0.722 Dipole moment (debyes) X Y Z Total from point charges -4.822 5.394 17.477 18.915 hybrid contribution -0.303 0.726 -0.931 1.219 sum -5.126 6.119 16.546 18.371 Atomic orbital electron populations 1.22496 0.98973 1.01499 0.99180 1.19115 0.90456 0.93582 0.83200 0.92563 1.21121 1.32730 1.14373 0.88118 0.90009 1.24902 0.95712 0.96558 0.95658 1.69869 1.44970 1.40138 0.97985 0.86959 0.80419 0.83872 0.77658 1.20333 1.18844 1.21981 1.57447 1.70120 1.19982 1.34704 1.21314 1.02486 0.81604 0.98807 1.02206 0.73152 0.73207 0.72389 1.93560 1.67792 1.60272 1.74186 1.93532 1.73569 1.54795 1.72346 1.58679 1.54156 1.14091 1.58002 1.22144 0.92818 0.95397 0.92934 1.23040 1.03380 0.81984 0.94887 1.87980 1.48643 1.18934 1.72939 1.22751 0.92024 0.98503 0.88231 1.20940 0.96732 0.82691 0.97400 0.86781 1.22400 0.90027 0.78112 0.76284 1.90737 1.29238 1.59028 1.60549 1.84351 1.43361 1.47103 1.56287 0.94853 0.93095 0.92053 0.92366 0.92347 0.93124 0.90419 0.89750 0.88638 0.87142 0.91779 0.86797 0.91106 0.72249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.19 8.66 37.16 0.32 -2.87 16 2 C 0.24 5.48 2.21 -69.08 -0.15 5.33 16 3 H 0.06 1.37 5.96 -51.93 -0.31 1.06 16 4 C -0.52 -14.30 8.95 -34.44 -0.31 -14.61 16 5 H 0.08 2.43 7.89 -52.49 -0.41 2.02 16 6 C 0.07 2.11 5.45 -17.82 -0.10 2.01 16 7 N -0.89 -26.65 13.96 55.43 0.77 -25.88 16 8 Si 0.88 21.11 24.38 -169.99 -4.14 16.97 16 9 H -0.28 -6.29 6.87 56.52 0.39 -5.90 16 10 H -0.26 -6.06 6.52 56.52 0.37 -5.70 16 11 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 12 N -0.98 -19.44 3.10 -115.85 -0.36 -19.79 16 13 C 0.10 1.73 9.47 59.85 0.57 2.30 16 14 S 2.78 54.88 4.96 -107.50 -0.53 54.34 16 15 O -0.98 -20.91 17.20 -57.17 -0.98 -21.89 16 16 O -0.96 -21.66 11.67 -69.23 -0.81 -22.47 16 17 N -1.01 -14.92 3.38 -107.48 -0.36 -15.28 16 18 C 0.09 1.00 6.76 -3.53 -0.02 0.98 16 19 C 0.05 0.42 6.98 37.32 0.26 0.68 16 20 O -0.37 -3.90 10.74 -35.23 -0.38 -4.28 16 21 C 0.06 0.68 6.24 37.09 0.23 0.91 16 22 C 0.13 1.74 3.53 -68.79 -0.24 1.49 16 23 H 0.11 1.30 8.14 -51.93 -0.42 0.87 16 24 C 0.49 7.77 4.46 36.00 0.16 7.93 16 25 O -0.51 -9.61 15.21 -26.86 -0.41 -10.02 16 26 O -0.50 -6.90 13.38 -44.08 -0.59 -7.49 16 27 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.05 1.06 3.29 -51.93 -0.17 0.89 16 29 H 0.06 1.12 6.66 -51.93 -0.35 0.78 16 30 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 31 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.05 0.67 6.12 -51.92 -0.32 0.35 16 33 H 0.08 1.19 6.43 -51.93 -0.33 0.86 16 34 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.10 0.95 6.20 -51.93 -0.32 0.63 16 36 H 0.11 0.70 8.14 -51.93 -0.42 0.27 16 37 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 38 H 0.11 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.07 0.81 7.96 -51.93 -0.41 0.40 16 40 H 0.42 4.35 9.10 45.56 0.41 4.77 16 LS Contribution 326.12 15.07 4.91 4.91 Total: -1.00 -36.70 326.12 -6.52 -43.21 By element: Atomic # 1 Polarization: 7.87 SS G_CDS: -4.35 Total: 3.51 kcal Atomic # 6 Polarization: 3.44 SS G_CDS: 0.72 Total: 4.15 kcal Atomic # 7 Polarization: -61.01 SS G_CDS: 0.05 Total: -60.96 kcal Atomic # 8 Polarization: -62.98 SS G_CDS: -3.17 Total: -66.15 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -4.14 Total: 16.97 kcal Atomic # 16 Polarization: 54.88 SS G_CDS: -0.53 Total: 54.34 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -36.70 -6.52 -43.21 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593269917.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -129.241 kcal (2) G-P(sol) polarization free energy of solvation -36.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds