Wall clock time and date at job start Fri Apr 10 2020 18:26:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47138 * 2 1 4 4 C 1.50705 * 109.47172 * 240.00516 * 2 1 3 5 5 H 1.07996 * 120.00232 * 245.24246 * 4 2 1 6 6 C 1.37879 * 119.99536 * 65.24551 * 4 2 1 7 7 N 1.31517 * 119.99354 * 196.39317 * 6 4 2 8 8 Si 1.86799 * 120.00575 * 16.39662 * 6 4 2 9 9 H 1.48497 * 109.47282 * 179.97438 * 8 6 4 10 10 H 1.48497 * 109.47402 * 59.99604 * 8 6 4 11 11 H 1.48508 * 109.46557 * 299.99754 * 8 6 4 12 12 N 1.46497 * 109.47418 * 120.00322 * 2 1 3 13 13 C 1.46499 * 119.99580 * 53.39076 * 12 2 1 14 14 S 1.65599 * 120.00410 * 233.38958 * 12 2 1 15 15 O 1.42102 * 106.40263 * 218.48161 * 14 12 2 16 16 O 1.42103 * 106.40051 * 351.39969 * 14 12 2 17 17 N 1.65598 * 107.21869 * 104.93908 * 14 12 2 18 18 C 1.46500 * 119.99891 * 271.71069 * 17 14 12 19 19 C 1.50703 * 110.45456 * 288.47724 * 18 17 14 20 20 O 1.20830 * 119.99929 * 209.36735 * 19 18 17 21 21 O 1.34220 * 120.00296 * 29.36048 * 19 18 17 22 22 C 1.54510 * 110.51067 * 165.87453 * 18 17 14 23 23 C 1.54801 * 103.91247 * 241.38538 * 22 18 17 24 24 O 1.44423 * 104.85511 * 23.87805 * 23 22 18 25 25 C 1.44427 * 105.27627 * 319.54035 * 24 23 22 26 26 H 1.09002 * 109.46856 * 180.89612 * 1 2 3 27 27 H 1.08997 * 109.47255 * 300.89834 * 1 2 3 28 28 H 1.09004 * 109.47101 * 60.89690 * 1 2 3 29 29 H 0.96992 * 120.00299 * 354.94167 * 7 6 4 30 30 H 1.08998 * 109.47220 * 95.05982 * 13 12 2 31 31 H 1.09000 * 109.46962 * 215.05583 * 13 12 2 32 32 H 1.09003 * 109.47719 * 335.05279 * 13 12 2 33 33 H 0.96998 * 119.99891 * 91.70753 * 17 14 12 34 34 H 0.96702 * 117.00355 * 185.04121 * 21 19 18 35 35 H 1.08998 * 110.51120 * 359.97438 * 22 18 17 36 36 H 1.08999 * 110.51383 * 122.70625 * 22 18 17 37 37 H 1.09001 * 110.29948 * 265.05202 * 23 22 18 38 38 H 1.08993 * 110.48146 * 142.79898 * 23 22 18 39 39 H 1.08992 * 110.37221 * 281.67664 * 25 24 23 40 40 H 1.08996 * 110.37061 * 159.34120 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.5816 -1.6351 -1.1339 6 6 1.7907 -0.1794 -2.4799 7 7 1.9314 -0.9290 -3.5513 8 14 1.2636 1.6046 -2.6507 9 1 1.0693 1.9279 -4.0870 10 1 2.3137 2.4876 -2.0827 11 1 -0.0108 1.8164 -1.9183 12 7 2.0184 -0.6906 1.1961 13 6 1.5492 -2.0441 1.5032 14 16 3.1007 0.0584 2.2009 15 8 4.0130 -0.9443 2.6270 16 8 3.5071 1.2477 1.5378 17 7 2.2676 0.5364 3.5499 18 6 1.6106 1.8455 3.5794 19 6 2.6352 2.9471 3.6693 20 8 2.3571 3.9876 4.2169 21 8 3.8567 2.7723 3.1412 22 6 0.6215 1.9282 4.7635 23 6 -0.7519 2.1545 4.0860 24 8 -0.5979 1.6255 2.7510 25 6 0.7220 2.0336 2.3299 26 1 -0.3633 -1.0276 0.0161 27 1 -0.3633 0.5277 0.8818 28 1 -0.3633 0.4999 -0.8980 29 1 2.2752 -1.8322 -3.4695 30 1 2.2591 -2.7724 1.1114 31 1 1.4655 -2.1632 2.5835 32 1 0.5738 -2.2037 1.0435 33 1 2.2146 -0.0503 4.3204 34 1 4.5035 3.4759 3.2884 35 1 0.6210 0.9950 5.3266 36 1 0.8720 2.7673 5.4126 37 1 -0.9841 3.2188 4.0481 38 1 -1.5341 1.6150 4.6201 39 1 0.7158 3.0793 2.0226 40 1 1.0733 1.4000 1.5156 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593271213.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:49 Heat of formation + Delta-G solvation = -176.941138 kcal Electronic energy + Delta-G solvation = -28639.125948 eV Core-core repulsion = 24582.429284 eV Total energy + Delta-G solvation = -4056.696664 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.112 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.08382 -39.06391 -36.90979 -36.48114 -36.14157 -35.32920 -35.02652 -32.58589 -30.88761 -30.00426 -28.75120 -25.93613 -24.85482 -24.18644 -23.26717 -20.86634 -20.42420 -18.94938 -18.56789 -17.77055 -17.66173 -17.18160 -16.94910 -16.70440 -15.95199 -15.28665 -15.21446 -15.01535 -14.25427 -13.91436 -13.72301 -13.38449 -13.28895 -13.08159 -13.05061 -12.33966 -12.21098 -12.09328 -11.88758 -11.77341 -11.65214 -11.59277 -11.56727 -11.31651 -11.23970 -11.20558 -11.01115 -10.78323 -10.41289 -10.10551 -9.95175 -9.75184 -9.60550 -9.14571 -8.43981 -8.09262 -6.48264 -4.12502 0.92143 1.95957 2.74658 3.17632 3.33645 3.45926 3.57509 3.68604 3.83448 4.01801 4.37165 4.44931 4.55769 4.76112 4.84549 5.01707 5.07422 5.18907 5.39366 5.41685 5.45330 5.48850 5.56159 5.66424 5.94898 6.19478 6.33557 6.38231 6.40531 6.45864 6.51786 6.61802 6.77943 6.98626 7.32153 7.44447 7.79033 7.94316 8.35395 8.87635 9.56306 10.89964 Molecular weight = 322.11amu Principal moments of inertia in cm(-1) A = 0.015109 B = 0.006495 C = 0.006048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1852.797842 B = 4310.187895 C = 4628.465860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.239 3.761 3 H 0.052 0.948 4 C -0.605 4.605 5 H 0.064 0.936 6 C 0.036 3.964 7 N -0.901 5.901 8 Si 1.028 2.972 9 H -0.282 1.282 10 H -0.275 1.275 11 H -0.268 1.268 12 N -0.988 5.988 13 C 0.108 3.892 14 S 2.770 3.230 15 O -0.984 6.984 16 O -0.945 6.945 17 N -1.115 6.115 18 C 0.166 3.834 19 C 0.481 3.519 20 O -0.515 6.515 21 O -0.475 6.475 22 C -0.144 4.144 23 C 0.043 3.957 24 O -0.346 6.346 25 C 0.022 3.978 26 H 0.054 0.946 27 H 0.047 0.953 28 H 0.065 0.935 29 H 0.269 0.731 30 H 0.051 0.949 31 H 0.044 0.956 32 H 0.078 0.922 33 H 0.416 0.584 34 H 0.407 0.593 35 H 0.096 0.904 36 H 0.104 0.896 37 H 0.069 0.931 38 H 0.102 0.898 39 H 0.085 0.915 40 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.120 5.470 17.810 19.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.135 3.865 3 H 0.069 0.931 4 C -0.645 4.645 5 H 0.082 0.918 6 C -0.170 4.170 7 N -0.535 5.535 8 Si 0.855 3.145 9 H -0.207 1.207 10 H -0.200 1.200 11 H -0.195 1.195 12 N -0.830 5.830 13 C -0.038 4.038 14 S 2.778 3.222 15 O -0.968 6.968 16 O -0.929 6.929 17 N -0.872 5.872 18 C 0.074 3.926 19 C 0.321 3.679 20 O -0.404 6.404 21 O -0.284 6.284 22 C -0.183 4.183 23 C -0.034 4.034 24 O -0.264 6.264 25 C -0.056 4.056 26 H 0.073 0.927 27 H 0.065 0.935 28 H 0.084 0.916 29 H 0.079 0.921 30 H 0.069 0.931 31 H 0.063 0.937 32 H 0.097 0.903 33 H 0.249 0.751 34 H 0.266 0.734 35 H 0.115 0.885 36 H 0.122 0.878 37 H 0.087 0.913 38 H 0.120 0.880 39 H 0.103 0.897 40 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -4.138 6.706 16.319 18.121 hybrid contribution 0.753 -1.038 1.737 2.159 sum -3.385 5.668 18.056 19.225 Atomic orbital electron populations 1.22814 0.98065 1.01749 1.01053 1.19061 0.91389 0.93036 0.83008 0.93103 1.22191 1.40708 1.10904 0.90650 0.91755 1.25671 0.94769 1.04684 0.91918 1.70851 1.40944 1.10421 1.31260 0.84336 0.77588 0.75819 0.76710 1.20732 1.20033 1.19451 1.57647 1.64289 1.24458 1.36654 1.21186 1.01393 0.83285 0.97962 1.02483 0.73623 0.73584 0.72461 1.93578 1.60096 1.60418 1.82678 1.93633 1.80068 1.46483 1.72707 1.56518 1.71889 1.23786 1.34995 1.21133 0.90218 0.81120 1.00172 1.23398 0.83008 0.87802 0.73732 1.90699 1.79801 1.28261 1.41655 1.84860 1.22103 1.51253 1.70182 1.23365 0.93589 1.05163 0.96158 1.23561 0.96353 0.99934 0.83597 1.89262 1.31272 1.75862 1.30041 1.24377 0.82517 1.03377 0.95287 0.92728 0.93455 0.91647 0.92103 0.93055 0.93706 0.90299 0.75131 0.73431 0.88518 0.87764 0.91270 0.88002 0.89727 0.85503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.64 8.40 37.16 0.31 -3.33 16 2 C 0.24 5.44 1.09 -69.08 -0.08 5.36 16 3 H 0.05 1.20 4.39 -51.93 -0.23 0.98 16 4 C -0.61 -16.48 8.78 -34.44 -0.30 -16.79 16 5 H 0.06 1.90 8.02 -52.49 -0.42 1.48 16 6 C 0.04 1.01 5.34 -17.82 -0.10 0.92 16 7 N -0.90 -27.08 13.70 55.43 0.76 -26.32 16 8 Si 1.03 24.51 26.33 -169.99 -4.48 20.04 16 9 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 10 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 11 H -0.27 -5.71 5.53 56.52 0.31 -5.40 16 12 N -0.99 -19.55 2.80 -115.85 -0.32 -19.87 16 13 C 0.11 1.84 9.85 59.85 0.59 2.43 16 14 S 2.77 51.56 5.25 -107.50 -0.56 51.00 16 15 O -0.98 -20.38 17.68 -57.17 -1.01 -21.39 16 16 O -0.95 -19.65 11.72 -67.16 -0.79 -20.44 16 17 N -1.11 -15.00 5.52 0.87 0.00 -14.99 16 18 C 0.17 2.20 0.99 -131.40 -0.13 2.07 16 19 C 0.48 6.77 6.96 36.01 0.25 7.02 16 20 O -0.52 -7.60 16.48 -18.75 -0.31 -7.91 16 21 O -0.47 -6.63 9.56 -47.34 -0.45 -7.08 16 22 C -0.14 -1.37 6.39 -24.99 -0.16 -1.52 16 23 C 0.04 0.41 7.64 38.11 0.29 0.70 16 24 O -0.35 -4.74 10.16 -35.23 -0.36 -5.10 16 25 C 0.02 0.34 5.76 37.93 0.22 0.56 16 26 H 0.05 1.08 6.41 -51.93 -0.33 0.75 16 27 H 0.05 0.85 4.57 -51.93 -0.24 0.61 16 28 H 0.06 1.40 4.63 -51.93 -0.24 1.16 16 29 H 0.27 8.06 8.73 -40.82 -0.36 7.70 16 30 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.04 0.59 8.09 -51.93 -0.42 0.17 16 32 H 0.08 1.31 6.08 -51.93 -0.32 0.99 16 33 H 0.42 4.23 8.35 -34.47 -0.29 3.94 16 34 H 0.41 3.67 9.11 45.56 0.41 4.08 16 35 H 0.10 0.70 7.59 -51.93 -0.39 0.30 16 36 H 0.10 0.94 6.88 -51.93 -0.36 0.59 16 37 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 38 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.08 1.21 7.86 -51.93 -0.41 0.80 16 40 H 0.13 2.24 1.36 -51.93 -0.07 2.17 16 LS Contribution 316.63 15.07 4.77 4.77 Total: -1.00 -35.25 316.63 -5.65 -40.91 By element: Atomic # 1 Polarization: 12.78 SS G_CDS: -3.81 Total: 8.97 kcal Atomic # 6 Polarization: -3.48 SS G_CDS: 0.90 Total: -2.58 kcal Atomic # 7 Polarization: -61.62 SS G_CDS: 0.44 Total: -61.18 kcal Atomic # 8 Polarization: -59.01 SS G_CDS: -2.92 Total: -61.93 kcal Atomic # 14 Polarization: 24.51 SS G_CDS: -4.48 Total: 20.04 kcal Atomic # 16 Polarization: 51.56 SS G_CDS: -0.56 Total: 51.00 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -35.25 -5.65 -40.91 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593271213.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -136.035 kcal (2) G-P(sol) polarization free energy of solvation -35.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -176.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds