Wall clock time and date at job start Fri Apr 10 2020 18:26:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47138 * 2 1 4 4 C 1.50705 * 109.47172 * 240.00516 * 2 1 3 5 5 H 1.07996 * 120.00232 * 245.24246 * 4 2 1 6 6 C 1.37879 * 119.99536 * 65.24551 * 4 2 1 7 7 N 1.31517 * 119.99354 * 196.39317 * 6 4 2 8 8 Si 1.86799 * 120.00575 * 16.39662 * 6 4 2 9 9 H 1.48497 * 109.47282 * 179.97438 * 8 6 4 10 10 H 1.48497 * 109.47402 * 59.99604 * 8 6 4 11 11 H 1.48508 * 109.46557 * 299.99754 * 8 6 4 12 12 N 1.46497 * 109.47418 * 120.00322 * 2 1 3 13 13 C 1.46499 * 119.99580 * 53.39076 * 12 2 1 14 14 S 1.65599 * 120.00410 * 233.38958 * 12 2 1 15 15 O 1.42102 * 106.40263 * 218.48161 * 14 12 2 16 16 O 1.42103 * 106.40051 * 351.39969 * 14 12 2 17 17 N 1.65598 * 107.21869 * 104.93908 * 14 12 2 18 18 C 1.46500 * 119.99891 * 271.71069 * 17 14 12 19 19 C 1.50703 * 110.45456 * 288.47724 * 18 17 14 20 20 O 1.20830 * 119.99929 * 209.36735 * 19 18 17 21 21 O 1.34220 * 120.00296 * 29.36048 * 19 18 17 22 22 C 1.54510 * 110.51067 * 165.87453 * 18 17 14 23 23 C 1.54801 * 103.91247 * 241.38538 * 22 18 17 24 24 O 1.44423 * 104.85511 * 23.87805 * 23 22 18 25 25 C 1.44427 * 105.27627 * 319.54035 * 24 23 22 26 26 H 1.09002 * 109.46856 * 180.89612 * 1 2 3 27 27 H 1.08997 * 109.47255 * 300.89834 * 1 2 3 28 28 H 1.09004 * 109.47101 * 60.89690 * 1 2 3 29 29 H 0.96992 * 120.00299 * 354.94167 * 7 6 4 30 30 H 1.08998 * 109.47220 * 95.05982 * 13 12 2 31 31 H 1.09000 * 109.46962 * 215.05583 * 13 12 2 32 32 H 1.09003 * 109.47719 * 335.05279 * 13 12 2 33 33 H 0.96998 * 119.99891 * 91.70753 * 17 14 12 34 34 H 0.96702 * 117.00355 * 185.04121 * 21 19 18 35 35 H 1.08998 * 110.51120 * 359.97438 * 22 18 17 36 36 H 1.08999 * 110.51383 * 122.70625 * 22 18 17 37 37 H 1.09001 * 110.29948 * 265.05202 * 23 22 18 38 38 H 1.08993 * 110.48146 * 142.79898 * 23 22 18 39 39 H 1.08992 * 110.37221 * 281.67664 * 25 24 23 40 40 H 1.08996 * 110.37061 * 159.34120 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.5816 -1.6351 -1.1339 6 6 1.7907 -0.1794 -2.4799 7 7 1.9314 -0.9290 -3.5513 8 14 1.2636 1.6046 -2.6507 9 1 1.0693 1.9279 -4.0870 10 1 2.3137 2.4876 -2.0827 11 1 -0.0108 1.8164 -1.9183 12 7 2.0184 -0.6906 1.1961 13 6 1.5492 -2.0441 1.5032 14 16 3.1007 0.0584 2.2009 15 8 4.0130 -0.9443 2.6270 16 8 3.5071 1.2477 1.5378 17 7 2.2676 0.5364 3.5499 18 6 1.6106 1.8455 3.5794 19 6 2.6352 2.9471 3.6693 20 8 2.3571 3.9876 4.2169 21 8 3.8567 2.7723 3.1412 22 6 0.6215 1.9282 4.7635 23 6 -0.7519 2.1545 4.0860 24 8 -0.5979 1.6255 2.7510 25 6 0.7220 2.0336 2.3299 26 1 -0.3633 -1.0276 0.0161 27 1 -0.3633 0.5277 0.8818 28 1 -0.3633 0.4999 -0.8980 29 1 2.2752 -1.8322 -3.4695 30 1 2.2591 -2.7724 1.1114 31 1 1.4655 -2.1632 2.5835 32 1 0.5738 -2.2037 1.0435 33 1 2.2146 -0.0503 4.3204 34 1 4.5035 3.4759 3.2884 35 1 0.6210 0.9950 5.3266 36 1 0.8720 2.7673 5.4126 37 1 -0.9841 3.2188 4.0481 38 1 -1.5341 1.6150 4.6201 39 1 0.7158 3.0793 2.0226 40 1 1.0733 1.4000 1.5156 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593271213.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:49 Heat of formation + Delta-G solvation = -208.029376 kcal Electronic energy + Delta-G solvation = -28640.474035 eV Core-core repulsion = 24582.429284 eV Total energy + Delta-G solvation = -4058.044751 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.112 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.09872 -40.06463 -38.46054 -38.09594 -37.24909 -36.84986 -36.11068 -34.63220 -31.82037 -31.62720 -29.83369 -27.43933 -26.62684 -25.42570 -24.09417 -22.47465 -21.58336 -20.32945 -19.73132 -19.55619 -19.10540 -18.46515 -18.22477 -17.94089 -16.92705 -16.63469 -16.27005 -16.19350 -15.81244 -15.55094 -15.11516 -14.69602 -14.62691 -14.29581 -14.22612 -14.03462 -13.74068 -13.37381 -13.33451 -13.19727 -13.13781 -12.96648 -12.78689 -12.63707 -12.50468 -12.36620 -12.22285 -12.13805 -12.04017 -11.74166 -11.50224 -11.13034 -11.03637 -10.73414 -10.44605 -9.86685 -8.69384 -6.35833 -0.51908 0.89790 1.43886 1.55414 1.68497 1.76078 1.91902 2.47195 2.53001 2.75382 2.99191 3.07801 3.25710 3.38294 3.85070 3.94273 4.00018 4.05907 4.16288 4.39820 4.45292 4.52187 4.67727 4.72911 4.74585 4.80541 4.84834 4.92489 5.01754 5.06393 5.33930 5.43040 5.56250 5.63058 5.76394 5.94197 5.99169 6.06541 6.61913 6.84920 7.41396 8.65429 Molecular weight = 322.11amu Principal moments of inertia in cm(-1) A = 0.015109 B = 0.006495 C = 0.006048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1852.797842 B = 4310.187895 C = 4628.465860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.245 3.755 3 H 0.048 0.952 4 C -0.606 4.606 5 H 0.025 0.975 6 C -0.014 4.014 7 N -0.935 5.935 8 Si 1.056 2.944 9 H -0.285 1.285 10 H -0.268 1.268 11 H -0.224 1.224 12 N -0.998 5.998 13 C 0.099 3.901 14 S 2.784 3.216 15 O -1.010 7.010 16 O -0.970 6.970 17 N -1.093 6.093 18 C 0.160 3.840 19 C 0.480 3.520 20 O -0.525 6.525 21 O -0.491 6.491 22 C -0.135 4.135 23 C 0.037 3.963 24 O -0.360 6.360 25 C 0.016 3.984 26 H 0.055 0.945 27 H 0.076 0.924 28 H 0.055 0.945 29 H 0.253 0.747 30 H 0.030 0.970 31 H 0.088 0.912 32 H 0.082 0.918 33 H 0.433 0.567 34 H 0.424 0.576 35 H 0.125 0.875 36 H 0.112 0.888 37 H 0.077 0.923 38 H 0.132 0.868 39 H 0.087 0.913 40 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.949 6.855 20.758 22.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.139 3.861 3 H 0.066 0.934 4 C -0.645 4.645 5 H 0.044 0.956 6 C -0.213 4.213 7 N -0.571 5.571 8 Si 0.877 3.123 9 H -0.211 1.211 10 H -0.193 1.193 11 H -0.148 1.148 12 N -0.839 5.839 13 C -0.046 4.046 14 S 2.793 3.207 15 O -0.994 6.994 16 O -0.954 6.954 17 N -0.855 5.855 18 C 0.068 3.932 19 C 0.320 3.680 20 O -0.414 6.414 21 O -0.303 6.303 22 C -0.173 4.173 23 C -0.039 4.039 24 O -0.279 6.279 25 C -0.063 4.063 26 H 0.074 0.926 27 H 0.095 0.905 28 H 0.074 0.926 29 H 0.062 0.938 30 H 0.049 0.951 31 H 0.106 0.894 32 H 0.100 0.900 33 H 0.271 0.729 34 H 0.286 0.714 35 H 0.143 0.857 36 H 0.130 0.870 37 H 0.095 0.905 38 H 0.150 0.850 39 H 0.105 0.895 40 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -5.962 8.059 19.309 21.756 hybrid contribution 1.397 -1.498 0.936 2.253 sum -4.565 6.561 20.245 21.766 Atomic orbital electron populations 1.22658 0.95880 1.02241 1.01925 1.18791 0.92824 0.92314 0.82167 0.93418 1.22441 1.39425 1.09548 0.93093 0.95633 1.26983 0.94702 1.07788 0.91834 1.70977 1.43635 1.10061 1.32427 0.84038 0.79669 0.71484 0.77151 1.21115 1.19332 1.14753 1.57592 1.64357 1.25521 1.36431 1.21384 1.00792 0.81677 1.00743 1.01788 0.73311 0.72713 0.72844 1.93544 1.61315 1.61378 1.83138 1.93594 1.80694 1.47241 1.73831 1.55909 1.71351 1.24369 1.33909 1.21373 0.90347 0.80053 1.01407 1.23549 0.83090 0.87909 0.73420 1.90694 1.79959 1.28626 1.42128 1.84827 1.22743 1.52495 1.70197 1.23458 0.92004 1.07046 0.94842 1.23867 0.97168 1.00931 0.81902 1.89227 1.30234 1.76257 1.32170 1.24266 0.83738 1.02927 0.95319 0.92578 0.90532 0.92588 0.93818 0.95083 0.89368 0.89964 0.72920 0.71407 0.85656 0.87008 0.90522 0.85021 0.89524 0.88106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -6.56 8.40 71.98 0.60 -5.96 16 2 C 0.24 10.96 1.09 44.25 0.05 11.01 16 3 H 0.05 2.22 4.39 -2.39 -0.01 2.21 16 4 C -0.61 -33.84 8.78 25.60 0.22 -33.61 16 5 H 0.03 1.58 8.02 -2.91 -0.02 1.56 16 6 C -0.01 -0.80 5.34 84.65 0.45 -0.34 16 7 N -0.94 -58.25 13.70 21.45 0.29 -57.96 16 8 Si 1.06 48.91 26.33 68.60 1.81 50.71 16 9 H -0.29 -13.32 7.11 99.48 0.71 -12.62 16 10 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 11 H -0.22 -8.75 5.53 99.48 0.55 -8.20 16 12 N -1.00 -38.61 2.80 -520.45 -1.46 -40.07 16 13 C 0.10 3.29 9.85 127.77 1.26 4.55 16 14 S 2.78 100.26 5.25 -56.49 -0.30 99.96 16 15 O -1.01 -41.02 17.68 -128.00 -2.26 -43.29 16 16 O -0.97 -39.66 11.72 -118.46 -1.39 -41.05 16 17 N -1.09 -26.19 5.52 -151.15 -0.83 -27.02 16 18 C 0.16 3.73 0.99 3.87 0.00 3.74 16 19 C 0.48 12.37 6.96 71.24 0.50 12.87 16 20 O -0.52 -14.15 16.48 21.95 0.36 -13.79 16 21 O -0.49 -12.95 9.56 -43.57 -0.42 -13.36 16 22 C -0.13 -1.95 6.39 31.72 0.20 -1.74 16 23 C 0.04 0.55 7.64 72.60 0.55 1.10 16 24 O -0.36 -8.49 10.16 -148.98 -1.51 -10.00 16 25 C 0.02 0.44 5.76 72.48 0.42 0.85 16 26 H 0.06 2.13 6.41 -2.39 -0.02 2.12 16 27 H 0.08 2.55 4.57 -2.39 -0.01 2.54 16 28 H 0.06 2.27 4.63 -2.38 -0.01 2.26 16 29 H 0.25 16.00 8.73 -92.71 -0.81 15.19 16 30 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.09 2.10 8.09 -2.39 -0.02 2.08 16 32 H 0.08 2.63 6.08 -2.39 -0.01 2.62 16 33 H 0.43 7.17 8.35 -96.75 -0.81 6.36 16 34 H 0.42 7.10 9.11 -74.06 -0.67 6.42 16 35 H 0.13 1.10 7.59 -2.39 -0.02 1.08 16 36 H 0.11 1.53 6.88 -2.39 -0.02 1.51 16 37 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 38 H 0.13 1.17 8.14 -2.39 -0.02 1.15 16 39 H 0.09 2.28 7.86 -2.39 -0.02 2.26 16 40 H 0.10 3.33 1.36 -2.39 0.00 3.32 16 Total: -1.00 -78.81 316.63 -1.99 -80.80 By element: Atomic # 1 Polarization: 23.15 SS G_CDS: -0.55 Total: 22.61 kcal Atomic # 6 Polarization: -11.80 SS G_CDS: 4.26 Total: -7.54 kcal Atomic # 7 Polarization: -123.06 SS G_CDS: -2.00 Total: -125.05 kcal Atomic # 8 Polarization: -116.27 SS G_CDS: -5.22 Total: -121.49 kcal Atomic # 14 Polarization: 48.91 SS G_CDS: 1.81 Total: 50.71 kcal Atomic # 16 Polarization: 100.26 SS G_CDS: -0.30 Total: 99.96 kcal Total: -78.81 -1.99 -80.80 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593271213.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -127.229 kcal (2) G-P(sol) polarization free energy of solvation -78.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -206.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -208.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds