Wall clock time and date at job start Fri Apr 10 2020 18:26:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42900 * 114.00047 * 2 1 4 4 C 1.53001 * 109.47344 * 180.02562 * 3 2 1 5 5 N 1.46502 * 109.47160 * 65.00137 * 4 3 2 6 6 C 1.46493 * 119.99751 * 84.99881 * 5 4 3 7 7 C 1.50706 * 109.47128 * 85.00265 * 6 5 4 8 8 H 1.08005 * 119.99758 * 359.97438 * 7 6 5 9 9 C 1.37871 * 120.00102 * 179.97438 * 7 6 5 10 10 N 1.31516 * 120.00217 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 119.99766 * 179.97438 * 9 7 6 12 12 H 1.48501 * 109.47057 * 179.97438 * 11 9 7 13 13 H 1.48500 * 109.47389 * 300.00068 * 11 9 7 14 14 H 1.48504 * 109.47102 * 60.00417 * 11 9 7 15 15 S 1.65596 * 119.99966 * 265.00396 * 5 4 3 16 16 O 1.42097 * 106.40729 * 23.53774 * 15 5 4 17 17 O 1.42103 * 106.40236 * 156.46090 * 15 5 4 18 18 N 1.65598 * 107.21978 * 269.99786 * 15 5 4 19 19 C 1.47072 * 136.05849 * 269.63783 * 18 15 5 20 20 C 1.53237 * 88.08158 * 207.20007 * 19 18 15 21 21 C 1.47065 * 136.06112 * 89.99717 * 18 15 5 22 22 H 1.09003 * 113.47009 * 267.63170 * 21 18 15 23 23 C 1.50707 * 113.46492 * 38.00865 * 21 18 15 24 24 O 1.20821 * 119.99955 * 0.02562 * 23 21 18 25 25 O 1.34222 * 120.00047 * 180.02562 * 23 21 18 26 26 H 1.09002 * 109.47306 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47177 * 299.99626 * 1 2 3 28 28 H 1.09002 * 109.47068 * 59.99686 * 1 2 3 29 29 H 1.09007 * 109.46987 * 60.00411 * 3 2 1 30 30 H 1.08996 * 109.47569 * 300.00005 * 3 2 1 31 31 H 1.09007 * 109.47135 * 305.00349 * 4 3 2 32 32 H 1.08996 * 109.47539 * 185.00264 * 4 3 2 33 33 H 1.09001 * 109.47786 * 325.00538 * 6 5 4 34 34 H 1.09006 * 109.47401 * 205.00123 * 6 5 4 35 35 H 0.97001 * 119.99646 * 359.97438 * 10 9 7 36 36 H 1.09004 * 113.46493 * 321.93040 * 19 18 15 37 37 H 1.08997 * 113.47348 * 92.36449 * 19 18 15 38 38 H 1.09001 * 114.32312 * 220.46557 * 20 19 18 39 39 H 1.08992 * 114.20022 * 87.72649 * 20 19 18 40 40 H 0.96701 * 116.99918 * 180.02562 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9757 0.5645 -1.2528 6 6 4.1808 1.3891 -2.4461 7 6 5.5681 1.9771 -2.4180 8 1 6.2306 1.7587 -1.5934 9 6 5.9916 2.7939 -3.4448 10 7 5.1847 3.0603 -4.4487 11 14 7.7109 3.5232 -3.4096 12 1 7.9194 4.3581 -4.6199 13 1 7.8675 4.3634 -2.1951 14 1 8.7131 2.4275 -3.3861 15 16 4.2413 -1.0687 -1.3192 16 8 3.4686 -1.6438 -0.2745 17 8 4.1044 -1.4424 -2.6833 18 7 5.8285 -1.3238 -0.9216 19 6 7.1022 -1.4110 -1.6517 20 6 7.6236 -2.3162 -0.5306 21 6 6.5839 -1.5690 0.3161 22 1 6.9710 -0.6597 0.7759 23 6 5.8584 -2.4542 1.2965 24 8 4.7631 -2.8859 1.0249 25 8 6.4289 -2.7629 2.4716 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 1.6886 1.8464 0.8901 30 1 1.6886 1.8464 -0.8899 31 1 3.8515 0.5682 0.8409 32 1 3.9785 2.1765 0.0890 33 1 3.4455 2.1936 -2.4626 34 1 4.0653 0.7730 -3.3378 35 1 4.2918 2.6818 -4.4667 36 1 7.0177 -1.9180 -2.6130 37 1 7.6287 -0.4592 -1.7215 38 1 8.6569 -2.1236 -0.2420 39 1 7.4064 -3.3747 -0.6735 40 1 5.9252 -3.3341 3.0675 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593271844.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:57 Heat of formation + Delta-G solvation = -159.032104 kcal Electronic energy + Delta-G solvation = -27712.052829 eV Core-core repulsion = 23656.132759 eV Total energy + Delta-G solvation = -4055.920070 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.112 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.56145 -38.46998 -37.75131 -36.37693 -35.82258 -35.49981 -34.88930 -32.78410 -29.38586 -28.57721 -27.44633 -26.38615 -25.63236 -23.04466 -22.23037 -21.69736 -21.01937 -18.35904 -18.06231 -17.57890 -17.02527 -16.70535 -16.46311 -16.16951 -15.52296 -15.31624 -15.13125 -14.58377 -14.30373 -14.08029 -13.78612 -13.38175 -13.23094 -12.75100 -12.62143 -12.54325 -12.03474 -11.92766 -11.77472 -11.67748 -11.53273 -11.31862 -11.26395 -11.07319 -10.94979 -10.86928 -10.72460 -10.54731 -10.39106 -10.17366 -9.98323 -9.43666 -9.31785 -8.92102 -8.46302 -7.92580 -6.46143 -4.20751 1.30040 2.30420 2.95292 3.34580 3.35927 3.49316 3.55591 4.15868 4.25710 4.30218 4.44419 4.71121 4.91380 5.04387 5.24312 5.28340 5.38231 5.40868 5.48777 5.55980 5.60546 5.60937 5.65573 5.83775 5.87774 5.89163 6.10898 6.18467 6.21966 6.43691 6.60732 6.62690 7.02800 7.24911 7.46734 7.59232 7.95492 8.02763 8.34394 8.71022 9.51603 10.90936 Molecular weight = 322.11amu Principal moments of inertia in cm(-1) A = 0.010773 B = 0.007026 C = 0.004909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2598.515987 B = 3984.306607 C = 5703.001451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.367 6.367 3 C 0.039 3.961 4 C 0.140 3.860 5 N -0.986 5.986 6 C 0.235 3.765 7 C -0.618 4.618 8 H 0.056 0.944 9 C 0.021 3.979 10 N -0.905 5.905 11 Si 1.068 2.932 12 H -0.282 1.282 13 H -0.288 1.288 14 H -0.286 1.286 15 S 2.793 3.207 16 O -0.932 6.932 17 O -0.979 6.979 18 N -1.023 6.023 19 C 0.129 3.871 20 C -0.135 4.135 21 C 0.163 3.837 22 H 0.125 0.875 23 C 0.445 3.555 24 O -0.454 6.454 25 O -0.521 6.521 26 H 0.081 0.919 27 H 0.035 0.965 28 H 0.036 0.964 29 H 0.051 0.949 30 H 0.053 0.947 31 H 0.070 0.930 32 H 0.094 0.906 33 H 0.024 0.976 34 H 0.039 0.961 35 H 0.270 0.730 36 H 0.085 0.915 37 H 0.096 0.904 38 H 0.097 0.903 39 H 0.095 0.905 40 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.664 -7.030 12.547 14.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.286 6.286 3 C -0.040 4.040 4 C 0.013 3.987 5 N -0.825 5.825 6 C 0.112 3.888 7 C -0.657 4.657 8 H 0.074 0.926 9 C -0.184 4.184 10 N -0.541 5.541 11 Si 0.895 3.105 12 H -0.207 1.207 13 H -0.215 1.215 14 H -0.212 1.212 15 S 2.803 3.197 16 O -0.915 6.915 17 O -0.964 6.964 18 N -0.861 5.861 19 C 0.004 3.996 20 C -0.174 4.174 21 C 0.054 3.946 22 H 0.143 0.857 23 C 0.282 3.718 24 O -0.336 6.336 25 O -0.333 6.333 26 H 0.100 0.900 27 H 0.053 0.947 28 H 0.054 0.946 29 H 0.069 0.931 30 H 0.071 0.929 31 H 0.088 0.912 32 H 0.112 0.888 33 H 0.042 0.958 34 H 0.057 0.943 35 H 0.080 0.920 36 H 0.103 0.897 37 H 0.114 0.886 38 H 0.116 0.884 39 H 0.113 0.887 40 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges 2.811 -6.711 11.032 13.215 hybrid contribution -1.527 -0.501 1.377 2.116 sum 1.285 -7.212 12.408 14.410 Atomic orbital electron populations 1.22693 0.82382 1.02309 0.99210 1.88169 1.18440 1.26785 1.95176 1.23100 0.95440 0.85448 1.00032 1.21018 0.91393 1.00233 0.86088 1.57760 1.80178 1.27141 1.17457 1.19216 0.97210 0.90613 0.81789 1.22341 0.99523 1.33946 1.09932 0.92597 1.25799 1.05202 0.95048 0.92354 1.70783 1.08963 1.43091 1.31214 0.83567 0.74323 0.76421 0.76144 1.20712 1.21478 1.21223 1.01865 0.71619 0.72864 0.73390 1.93723 1.65368 1.75290 1.57145 1.93549 1.84920 1.82404 1.35531 1.61061 1.23151 1.87356 1.14543 1.22356 0.81460 0.99539 0.96233 1.23475 0.98393 1.00074 0.95486 1.21592 0.90361 0.97598 0.85074 0.85734 1.23775 0.85230 0.81425 0.81375 1.91031 1.18625 1.48364 1.75615 1.84480 1.52839 1.66672 1.29280 0.90012 0.94677 0.94584 0.93113 0.92890 0.91181 0.88818 0.95831 0.94339 0.91954 0.89704 0.88586 0.88421 0.88655 0.73432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 11.01 101.05 1.11 1.57 16 2 O -0.37 -7.02 8.76 -54.44 -0.48 -7.49 16 3 C 0.04 0.66 6.28 37.16 0.23 0.89 16 4 C 0.14 2.56 5.82 -4.04 -0.02 2.54 16 5 N -0.99 -21.44 2.77 -115.66 -0.32 -21.76 16 6 C 0.23 5.89 4.75 -5.19 -0.02 5.86 16 7 C -0.62 -16.04 9.38 -34.44 -0.32 -16.36 16 8 H 0.06 1.38 7.81 -52.48 -0.41 0.97 16 9 C 0.02 0.58 5.46 -17.82 -0.10 0.48 16 10 N -0.91 -26.43 13.65 55.43 0.76 -25.67 16 11 Si 1.07 23.46 29.90 -169.99 -5.08 18.38 16 12 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 13 H -0.29 -6.02 7.11 56.52 0.40 -5.61 16 14 H -0.29 -5.85 7.11 56.52 0.40 -5.45 16 15 S 2.79 61.83 6.54 -107.50 -0.70 61.13 16 16 O -0.93 -21.48 11.57 -70.10 -0.81 -22.30 16 17 O -0.98 -25.15 16.69 -57.17 -0.95 -26.10 16 18 N -1.02 -18.25 4.01 -119.34 -0.48 -18.73 16 19 C 0.13 1.90 8.71 -8.65 -0.08 1.82 16 20 C -0.13 -1.46 8.00 -26.35 -0.21 -1.67 16 21 C 0.16 2.21 4.64 -73.56 -0.34 1.87 16 22 H 0.13 1.40 8.14 -51.93 -0.42 0.98 16 23 C 0.44 6.42 7.89 36.01 0.28 6.71 16 24 O -0.45 -8.61 13.70 -26.91 -0.37 -8.98 16 25 O -0.52 -5.44 13.42 -39.24 -0.53 -5.96 16 26 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 27 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.05 0.93 8.08 -51.93 -0.42 0.51 16 31 H 0.07 1.21 7.61 -51.93 -0.40 0.81 16 32 H 0.09 1.62 8.11 -51.93 -0.42 1.20 16 33 H 0.02 0.60 7.91 -51.93 -0.41 0.19 16 34 H 0.04 1.08 6.78 -51.93 -0.35 0.72 16 35 H 0.27 7.94 7.22 -40.82 -0.29 7.64 16 36 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 37 H 0.10 1.37 8.14 -51.93 -0.42 0.95 16 38 H 0.10 0.74 8.14 -51.93 -0.42 0.31 16 39 H 0.09 1.00 8.11 -51.93 -0.42 0.58 16 40 H 0.41 2.67 9.10 45.56 0.41 3.08 16 LS Contribution 350.16 15.07 5.28 5.28 Total: -1.00 -37.62 350.16 -8.04 -45.66 By element: Atomic # 1 Polarization: 7.73 SS G_CDS: -4.89 Total: 2.84 kcal Atomic # 6 Polarization: 3.17 SS G_CDS: 0.53 Total: 3.70 kcal Atomic # 7 Polarization: -66.12 SS G_CDS: -0.04 Total: -66.16 kcal Atomic # 8 Polarization: -67.70 SS G_CDS: -3.14 Total: -70.83 kcal Atomic # 14 Polarization: 23.46 SS G_CDS: -5.08 Total: 18.38 kcal Atomic # 16 Polarization: 61.83 SS G_CDS: -0.70 Total: 61.13 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -37.62 -8.04 -45.66 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593271844.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.370 kcal (2) G-P(sol) polarization free energy of solvation -37.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds