Wall clock time and date at job start Fri Apr 10 2020 18:26:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42900 * 114.00047 * 2 1 4 4 C 1.53001 * 109.47344 * 180.02562 * 3 2 1 5 5 N 1.46502 * 109.47160 * 65.00137 * 4 3 2 6 6 C 1.46493 * 119.99751 * 84.99881 * 5 4 3 7 7 C 1.50706 * 109.47128 * 85.00265 * 6 5 4 8 8 H 1.08005 * 119.99758 * 359.97438 * 7 6 5 9 9 C 1.37871 * 120.00102 * 179.97438 * 7 6 5 10 10 N 1.31516 * 120.00217 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 119.99766 * 179.97438 * 9 7 6 12 12 H 1.48501 * 109.47057 * 179.97438 * 11 9 7 13 13 H 1.48500 * 109.47389 * 300.00068 * 11 9 7 14 14 H 1.48504 * 109.47102 * 60.00417 * 11 9 7 15 15 S 1.65596 * 119.99966 * 265.00396 * 5 4 3 16 16 O 1.42097 * 106.40729 * 23.53774 * 15 5 4 17 17 O 1.42103 * 106.40236 * 156.46090 * 15 5 4 18 18 N 1.65598 * 107.21978 * 269.99786 * 15 5 4 19 19 C 1.47072 * 136.05849 * 269.63783 * 18 15 5 20 20 C 1.53237 * 88.08158 * 207.20007 * 19 18 15 21 21 C 1.47065 * 136.06112 * 89.99717 * 18 15 5 22 22 H 1.09003 * 113.47009 * 267.63170 * 21 18 15 23 23 C 1.50707 * 113.46492 * 38.00865 * 21 18 15 24 24 O 1.20821 * 119.99955 * 0.02562 * 23 21 18 25 25 O 1.34222 * 120.00047 * 180.02562 * 23 21 18 26 26 H 1.09002 * 109.47306 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47177 * 299.99626 * 1 2 3 28 28 H 1.09002 * 109.47068 * 59.99686 * 1 2 3 29 29 H 1.09007 * 109.46987 * 60.00411 * 3 2 1 30 30 H 1.08996 * 109.47569 * 300.00005 * 3 2 1 31 31 H 1.09007 * 109.47135 * 305.00349 * 4 3 2 32 32 H 1.08996 * 109.47539 * 185.00264 * 4 3 2 33 33 H 1.09001 * 109.47786 * 325.00538 * 6 5 4 34 34 H 1.09006 * 109.47401 * 205.00123 * 6 5 4 35 35 H 0.97001 * 119.99646 * 359.97438 * 10 9 7 36 36 H 1.09004 * 113.46493 * 321.93040 * 19 18 15 37 37 H 1.08997 * 113.47348 * 92.36449 * 19 18 15 38 38 H 1.09001 * 114.32312 * 220.46557 * 20 19 18 39 39 H 1.08992 * 114.20022 * 87.72649 * 20 19 18 40 40 H 0.96701 * 116.99918 * 180.02562 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9757 0.5645 -1.2528 6 6 4.1808 1.3891 -2.4461 7 6 5.5681 1.9771 -2.4180 8 1 6.2306 1.7587 -1.5934 9 6 5.9916 2.7939 -3.4448 10 7 5.1847 3.0603 -4.4487 11 14 7.7109 3.5232 -3.4096 12 1 7.9194 4.3581 -4.6199 13 1 7.8675 4.3634 -2.1951 14 1 8.7131 2.4275 -3.3861 15 16 4.2413 -1.0687 -1.3192 16 8 3.4686 -1.6438 -0.2745 17 8 4.1044 -1.4424 -2.6833 18 7 5.8285 -1.3238 -0.9216 19 6 7.1022 -1.4110 -1.6517 20 6 7.6236 -2.3162 -0.5306 21 6 6.5839 -1.5690 0.3161 22 1 6.9710 -0.6597 0.7759 23 6 5.8584 -2.4542 1.2965 24 8 4.7631 -2.8859 1.0249 25 8 6.4289 -2.7629 2.4716 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 1.6886 1.8464 0.8901 30 1 1.6886 1.8464 -0.8899 31 1 3.8515 0.5682 0.8409 32 1 3.9785 2.1765 0.0890 33 1 3.4455 2.1936 -2.4626 34 1 4.0653 0.7730 -3.3378 35 1 4.2918 2.6818 -4.4667 36 1 7.0177 -1.9180 -2.6130 37 1 7.6287 -0.4592 -1.7215 38 1 8.6569 -2.1236 -0.2420 39 1 7.4064 -3.3747 -0.6735 40 1 5.9252 -3.3341 3.0675 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593271844.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:56 Heat of formation + Delta-G solvation = -189.393804 kcal Electronic energy + Delta-G solvation = -27713.369411 eV Core-core repulsion = 23656.132759 eV Total energy + Delta-G solvation = -4057.236652 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.112 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.66984 -39.57521 -39.15797 -38.14547 -37.20128 -36.94240 -36.65264 -34.74260 -30.96185 -29.79160 -28.55659 -28.09129 -27.06356 -24.93807 -23.28987 -23.24421 -22.20207 -19.84356 -19.22332 -18.96247 -18.84434 -18.27406 -17.72501 -17.61768 -17.01497 -16.66081 -16.37725 -15.95707 -15.79707 -15.53866 -15.25067 -14.88393 -14.59009 -14.48940 -14.04856 -13.74123 -13.62876 -13.51778 -13.09817 -13.07734 -13.02678 -12.95885 -12.67557 -12.55757 -12.43158 -12.34958 -12.26331 -11.98186 -11.90460 -11.83893 -11.28333 -11.19294 -10.63339 -10.52671 -10.21835 -9.72924 -8.60549 -6.37168 -0.32909 1.21043 1.60103 1.68305 1.85304 1.87072 2.08080 2.63500 2.71273 2.88858 3.13999 3.21714 3.41133 3.76863 3.93781 4.07130 4.11440 4.15371 4.29818 4.42805 4.44799 4.45906 4.51842 4.68203 4.72008 4.76977 4.78173 4.88931 4.94368 4.98490 5.14508 5.31407 5.41944 5.69074 5.79712 5.88703 6.23980 6.29227 6.51913 7.06901 7.45803 8.75173 Molecular weight = 322.11amu Principal moments of inertia in cm(-1) A = 0.010773 B = 0.007026 C = 0.004909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2598.515987 B = 3984.306607 C = 5703.001451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.403 6.403 3 C 0.037 3.963 4 C 0.133 3.867 5 N -0.990 5.990 6 C 0.249 3.751 7 C -0.613 4.613 8 H 0.072 0.928 9 C -0.032 4.032 10 N -0.937 5.937 11 Si 1.115 2.885 12 H -0.294 1.294 13 H -0.265 1.265 14 H -0.257 1.257 15 S 2.801 3.199 16 O -0.945 6.945 17 O -1.030 7.030 18 N -1.039 6.039 19 C 0.114 3.886 20 C -0.103 4.103 21 C 0.155 3.845 22 H 0.157 0.843 23 C 0.452 3.548 24 O -0.508 6.508 25 O -0.502 6.502 26 H 0.085 0.915 27 H 0.063 0.937 28 H 0.039 0.961 29 H 0.088 0.912 30 H 0.040 0.960 31 H 0.082 0.918 32 H 0.104 0.896 33 H 0.011 0.989 34 H -0.001 1.001 35 H 0.252 0.748 36 H 0.071 0.929 37 H 0.104 0.896 38 H 0.147 0.853 39 H 0.098 0.902 40 H 0.426 0.574 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.388 -6.822 15.266 17.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.322 6.322 3 C -0.041 4.041 4 C 0.007 3.993 5 N -0.829 5.829 6 C 0.125 3.875 7 C -0.652 4.652 8 H 0.090 0.910 9 C -0.230 4.230 10 N -0.575 5.575 11 Si 0.935 3.065 12 H -0.220 1.220 13 H -0.190 1.190 14 H -0.182 1.182 15 S 2.812 3.188 16 O -0.928 6.928 17 O -1.015 7.015 18 N -0.881 5.881 19 C -0.010 4.010 20 C -0.143 4.143 21 C 0.047 3.953 22 H 0.174 0.826 23 C 0.292 3.708 24 O -0.395 6.395 25 O -0.315 6.315 26 H 0.104 0.896 27 H 0.081 0.919 28 H 0.058 0.942 29 H 0.106 0.894 30 H 0.058 0.942 31 H 0.101 0.899 32 H 0.123 0.877 33 H 0.029 0.971 34 H 0.017 0.983 35 H 0.062 0.938 36 H 0.090 0.910 37 H 0.122 0.878 38 H 0.165 0.835 39 H 0.116 0.884 40 H 0.288 0.712 Dipole moment (debyes) X Y Z Total from point charges 5.521 -6.529 13.820 16.251 hybrid contribution -2.372 -0.641 0.647 2.541 sum 3.149 -7.170 14.467 16.451 Atomic orbital electron populations 1.22898 0.80458 1.03170 1.00742 1.88114 1.20774 1.27902 1.95459 1.23144 0.94631 0.85147 1.01156 1.21283 0.92490 1.00712 0.84782 1.57670 1.81028 1.26700 1.17548 1.18801 0.96998 0.89723 0.81993 1.22611 0.99699 1.32860 1.09989 0.90978 1.27399 1.08453 0.95407 0.91752 1.70924 1.08760 1.44786 1.32982 0.82999 0.70325 0.76682 0.76470 1.22046 1.18989 1.18165 1.01254 0.72683 0.72777 0.72132 1.93701 1.66903 1.75421 1.56818 1.93474 1.86315 1.83268 1.38426 1.60783 1.22727 1.86844 1.17696 1.22682 0.80236 1.01015 0.97090 1.23447 0.99974 0.99121 0.91712 1.22139 0.89830 0.99297 0.84065 0.82585 1.23932 0.84344 0.80465 0.82075 1.91029 1.21027 1.50597 1.76857 1.84428 1.52353 1.66629 1.28118 0.89614 0.91880 0.94237 0.89409 0.94183 0.89943 0.87746 0.97127 0.98260 0.93824 0.91016 0.87815 0.83474 0.88378 0.71228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.68 11.01 113.37 1.25 1.93 16 2 O -0.40 -15.44 8.76 -130.61 -1.14 -16.58 16 3 C 0.04 1.26 6.28 71.98 0.45 1.72 16 4 C 0.13 4.79 5.82 86.38 0.50 5.29 16 5 N -0.99 -43.81 2.77 -519.83 -1.44 -45.25 16 6 C 0.25 12.97 4.75 85.64 0.41 13.37 16 7 C -0.61 -31.73 9.38 25.60 0.24 -31.49 16 8 H 0.07 3.43 7.81 -2.91 -0.02 3.41 16 9 C -0.03 -1.72 5.46 84.65 0.46 -1.26 16 10 N -0.94 -56.21 13.65 21.45 0.29 -55.91 16 11 Si 1.11 45.63 29.90 68.60 2.05 47.68 16 12 H -0.29 -12.61 7.11 99.48 0.71 -11.90 16 13 H -0.26 -9.81 7.11 99.48 0.71 -9.11 16 14 H -0.26 -9.28 7.11 99.48 0.71 -8.58 16 15 S 2.80 126.99 6.54 -56.49 -0.37 126.62 16 16 O -0.94 -44.41 11.57 -115.64 -1.34 -45.75 16 17 O -1.03 -55.81 16.69 -128.00 -2.14 -57.94 16 18 N -1.04 -36.04 4.01 -531.49 -2.13 -38.17 16 19 C 0.11 3.13 8.71 83.08 0.72 3.85 16 20 C -0.10 -1.81 8.00 30.84 0.25 -1.57 16 21 C 0.15 3.70 4.64 41.04 0.19 3.89 16 22 H 0.16 2.77 8.14 -2.39 -0.02 2.75 16 23 C 0.45 11.96 7.89 71.24 0.56 12.52 16 24 O -0.51 -18.94 13.70 29.78 0.41 -18.53 16 25 O -0.50 -8.68 13.42 -51.34 -0.69 -9.36 16 26 H 0.09 2.34 8.14 -2.39 -0.02 2.32 16 27 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 28 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 29 H 0.09 2.27 8.14 -2.38 -0.02 2.25 16 30 H 0.04 1.43 8.08 -2.39 -0.02 1.41 16 31 H 0.08 2.75 7.61 -2.38 -0.02 2.73 16 32 H 0.10 3.47 8.11 -2.39 -0.02 3.45 16 33 H 0.01 0.58 7.91 -2.39 -0.02 0.56 16 34 H 0.00 -0.03 6.78 -2.38 -0.02 -0.05 16 35 H 0.25 15.62 7.22 -92.71 -0.67 14.95 16 36 H 0.07 2.12 8.14 -2.38 -0.02 2.10 16 37 H 0.10 2.66 8.14 -2.39 -0.02 2.64 16 38 H 0.15 1.26 8.14 -2.39 -0.02 1.24 16 39 H 0.10 1.72 8.11 -2.39 -0.02 1.70 16 40 H 0.43 4.22 9.10 -74.06 -0.67 3.55 16 Total: -1.00 -86.05 350.16 -0.98 -87.03 By element: Atomic # 1 Polarization: 17.43 SS G_CDS: 0.49 Total: 17.92 kcal Atomic # 6 Polarization: 3.23 SS G_CDS: 5.03 Total: 8.26 kcal Atomic # 7 Polarization: -136.05 SS G_CDS: -3.28 Total: -139.33 kcal Atomic # 8 Polarization: -143.27 SS G_CDS: -4.90 Total: -148.17 kcal Atomic # 14 Polarization: 45.63 SS G_CDS: 2.05 Total: 47.68 kcal Atomic # 16 Polarization: 126.99 SS G_CDS: -0.37 Total: 126.62 kcal Total: -86.05 -0.98 -87.03 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593271844.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.363 kcal (2) G-P(sol) polarization free energy of solvation -86.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -188.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.030 kcal (6) G-S(sol) free energy of system = (1) + (5) -189.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds