Wall clock time and date at job start Fri Apr 10 2020 18:25:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.47286 * 2 1 4 4 C 1.50700 * 109.47307 * 239.99347 * 2 1 3 5 5 H 1.07998 * 120.00386 * 240.00328 * 4 2 1 6 6 C 1.37882 * 119.99716 * 60.00777 * 4 2 1 7 7 N 1.31516 * 119.99590 * 359.97438 * 6 4 2 8 8 Si 1.86796 * 119.99885 * 179.97438 * 6 4 2 9 9 H 1.48508 * 109.47128 * 59.99873 * 8 6 4 10 10 H 1.48504 * 109.46887 * 179.97438 * 8 6 4 11 11 H 1.48492 * 109.47338 * 299.99368 * 8 6 4 12 12 N 1.46507 * 109.46981 * 120.00002 * 2 1 3 13 13 S 1.65603 * 119.99662 * 265.00120 * 12 2 1 14 14 O 1.42098 * 106.40442 * 311.45822 * 13 12 2 15 15 O 1.42103 * 106.39998 * 178.53789 * 13 12 2 16 16 C 1.76203 * 107.21852 * 64.99834 * 13 12 2 17 17 C 1.35374 * 126.97221 * 270.03839 * 16 13 12 18 18 N 1.33776 * 106.53371 * 179.97438 * 17 16 13 19 19 N 1.28607 * 109.06277 * 0.02562 * 18 17 16 20 20 N 1.28734 * 110.23333 * 359.97438 * 19 18 17 21 21 C 1.40254 * 125.93931 * 179.97438 * 20 19 18 22 22 C 1.38818 * 120.06164 * 144.75155 * 21 20 19 23 23 C 1.38123 * 119.93558 * 179.67947 * 22 21 20 24 24 C 1.38282 * 120.05971 * 0.62073 * 23 22 21 25 25 C 1.38272 * 120.13058 * 359.67698 * 24 23 22 26 26 C 1.38121 * 120.06991 * 0.02562 * 25 24 23 27 27 H 1.08998 * 109.46891 * 300.00380 * 1 2 3 28 28 H 1.08997 * 109.46926 * 60.00058 * 1 2 3 29 29 H 1.08997 * 109.47286 * 179.97438 * 1 2 3 30 30 H 0.97000 * 119.99387 * 180.02562 * 7 6 4 31 31 H 0.96998 * 120.00143 * 84.99668 * 12 2 1 32 32 H 1.07998 * 126.73267 * 359.94525 * 17 16 13 33 33 H 1.08003 * 120.03262 * 359.97438 * 22 21 20 34 34 H 1.07993 * 119.97221 * 180.34248 * 23 22 21 35 35 H 1.08002 * 119.93332 * 179.70607 * 24 23 22 36 36 H 1.08007 * 119.96699 * 180.02562 * 25 24 23 37 37 H 1.08001 * 120.03980 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1312 6 6 1.6994 -0.2395 -2.4827 7 7 0.9430 0.8296 -2.6034 8 14 2.3227 -1.1197 -4.0078 9 1 1.8281 -2.5201 -4.0080 10 1 1.8272 -0.4201 -5.2204 11 1 3.8076 -1.1192 -4.0076 12 7 2.0183 -0.6906 1.1962 13 16 2.4121 0.1772 2.5505 14 8 3.2436 1.2443 2.1157 15 8 2.8122 -0.7697 3.5316 16 6 0.9273 0.9148 3.1474 17 6 0.4276 2.1268 2.8099 18 7 -0.7095 2.2751 3.4989 19 7 -0.9048 1.2266 4.2177 20 7 0.0502 0.3815 4.0411 21 6 0.1668 -0.8705 4.6623 22 6 0.7106 -1.9430 3.9687 23 6 0.8303 -3.1732 4.5852 24 6 0.3973 -3.3402 5.8878 25 6 -0.1504 -2.2753 6.5791 26 6 -0.2671 -1.0412 5.9699 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 0.7084 1.1608 -3.4844 31 1 2.1109 -1.6562 1.1950 32 1 0.8618 2.8353 2.1201 33 1 1.0441 -1.8144 2.9495 34 1 1.2583 -4.0065 4.0479 35 1 0.4875 -4.3042 6.3663 36 1 -0.4874 -2.4086 7.5966 37 1 -0.6946 -0.2097 6.5105 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599226768.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:35 Heat of formation + Delta-G solvation = 70.070417 kcal Electronic energy + Delta-G solvation = -25703.799318 eV Core-core repulsion = 21997.415550 eV Total energy + Delta-G solvation = -3706.383768 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 322.089 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.49170 -39.49583 -37.08600 -35.74715 -35.65747 -34.71440 -32.39609 -31.75074 -30.98654 -30.03198 -28.53751 -25.37993 -24.49191 -23.85187 -22.35086 -21.70042 -21.17957 -19.54705 -18.69816 -17.75384 -16.85855 -16.72584 -16.62939 -16.03700 -15.54410 -15.15654 -14.79641 -14.71415 -14.14318 -13.85048 -13.68259 -13.26345 -12.86088 -12.59655 -12.40022 -12.14232 -12.01727 -11.89467 -11.80863 -11.55214 -11.43095 -11.31884 -11.06244 -10.97002 -10.85769 -10.79516 -10.48918 -10.22204 -9.86527 -9.38088 -9.19584 -8.87043 -8.82134 -8.48018 -6.22372 -4.30956 0.35021 0.57040 1.10512 1.47141 2.07122 2.37817 3.22254 3.27110 3.27960 3.33737 3.46297 3.86961 4.17554 4.28137 4.51150 4.57081 4.67138 4.80317 4.97194 5.06459 5.10345 5.15061 5.26888 5.43539 5.67161 5.90829 5.99610 6.07208 6.08453 6.19410 6.32698 6.58177 6.64740 6.68886 6.83234 7.37344 7.48252 7.64205 7.86100 8.09616 8.20561 8.70516 9.35626 10.83774 Molecular weight = 322.09amu Principal moments of inertia in cm(-1) A = 0.016848 B = 0.004725 C = 0.004303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1661.474536 B = 5924.401722 C = 6505.360145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.266 3.734 3 H 0.055 0.945 4 C -0.525 4.525 5 H 0.066 0.934 6 C 0.066 3.934 7 N -0.886 5.886 8 Si 0.904 3.096 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.275 1.275 12 N -1.091 6.091 13 S 2.705 3.295 14 O -0.935 6.935 15 O -0.963 6.963 16 C -0.586 4.586 17 C 0.079 3.921 18 N -0.273 5.273 19 N -0.043 5.043 20 N -0.177 5.177 21 C 0.094 3.906 22 C -0.063 4.063 23 C -0.098 4.098 24 C -0.099 4.099 25 C -0.114 4.114 26 C -0.088 4.088 27 H 0.008 0.992 28 H 0.098 0.902 29 H 0.035 0.965 30 H 0.267 0.733 31 H 0.412 0.588 32 H 0.210 0.790 33 H 0.124 0.876 34 H 0.141 0.859 35 H 0.133 0.867 36 H 0.136 0.864 37 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.575 -6.614 14.353 15.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.163 3.837 3 H 0.073 0.927 4 C -0.565 4.565 5 H 0.084 0.916 6 C -0.138 4.138 7 N -0.523 5.523 8 Si 0.731 3.269 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.200 1.200 12 N -0.855 5.855 13 S 2.785 3.215 14 O -0.924 6.924 15 O -0.952 6.952 16 C -0.794 4.794 17 C -0.080 4.080 18 N -0.136 5.136 19 N -0.023 5.023 20 N 0.032 4.968 21 C 0.004 3.996 22 C -0.084 4.084 23 C -0.117 4.117 24 C -0.117 4.117 25 C -0.133 4.133 26 C -0.108 4.108 27 H 0.027 0.973 28 H 0.117 0.883 29 H 0.054 0.946 30 H 0.077 0.923 31 H 0.247 0.753 32 H 0.227 0.773 33 H 0.142 0.858 34 H 0.158 0.842 35 H 0.151 0.849 36 H 0.154 0.846 37 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -2.257 -5.768 15.315 16.520 hybrid contribution 0.479 -0.729 -1.528 1.759 sum -1.778 -6.497 13.787 15.345 Atomic orbital electron populations 1.22319 0.98419 1.00102 1.01059 1.18748 0.90804 0.93311 0.80850 0.92726 1.21100 1.32445 1.13406 0.89505 0.91571 1.24915 0.94729 0.94977 0.99133 1.69840 1.35756 1.22422 1.24316 0.86466 0.79332 0.79522 0.81568 1.20167 1.21106 1.19992 1.55687 1.83478 1.19210 1.27163 1.02002 0.72558 0.73902 0.73075 1.93625 1.60649 1.56924 1.81201 1.93610 1.80508 1.60873 1.60200 1.35386 1.22823 1.09619 1.11535 1.23706 0.91669 0.94415 0.98252 1.75131 1.15686 1.15083 1.07681 1.78192 1.10035 0.95654 1.18418 1.44314 1.13498 1.12841 1.26167 1.17680 1.06899 0.81288 0.93698 1.21014 0.95640 0.91723 1.00071 1.21001 0.99026 0.96493 0.95186 1.21376 0.96680 0.99248 0.94420 1.21030 1.00042 0.91818 1.00397 1.20949 0.98915 0.99180 0.91739 0.97323 0.88320 0.94611 0.92312 0.75293 0.77321 0.85802 0.84167 0.84866 0.84596 0.84502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.50 9.29 37.16 0.35 -3.15 16 2 C 0.27 5.99 2.90 -69.08 -0.20 5.79 16 3 H 0.06 1.34 7.50 -51.93 -0.39 0.95 16 4 C -0.52 -13.00 8.76 -34.44 -0.30 -13.30 16 5 H 0.07 1.57 7.81 -52.49 -0.41 1.16 16 6 C 0.07 1.68 5.30 -17.82 -0.09 1.59 16 7 N -0.89 -23.35 11.32 55.43 0.63 -22.73 16 8 Si 0.90 19.85 29.54 -169.99 -5.02 14.83 16 9 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 10 H -0.29 -6.28 7.11 56.52 0.40 -5.88 16 11 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 12 N -1.09 -20.15 4.62 -5.88 -0.03 -20.18 16 13 S 2.71 48.57 4.95 -107.50 -0.53 48.04 16 14 O -0.94 -19.35 17.22 -57.17 -0.98 -20.34 16 15 O -0.96 -16.89 14.18 -57.17 -0.81 -17.70 16 16 C -0.59 -10.35 5.96 -16.68 -0.10 -10.45 16 17 C 0.08 1.39 10.96 -17.73 -0.19 1.19 16 18 N -0.27 -4.97 12.39 30.24 0.37 -4.60 16 19 N -0.04 -0.77 12.85 60.35 0.78 0.01 16 20 N -0.18 -3.01 3.50 -9.69 -0.03 -3.04 16 21 C 0.09 1.41 6.01 -83.57 -0.50 0.91 16 22 C -0.06 -0.89 6.96 -39.41 -0.27 -1.17 16 23 C -0.10 -1.07 10.04 -39.61 -0.40 -1.47 16 24 C -0.10 -0.88 10.04 -39.55 -0.40 -1.28 16 25 C -0.11 -1.06 10.04 -39.61 -0.40 -1.46 16 26 C -0.09 -1.06 9.71 -39.41 -0.38 -1.45 16 27 H 0.01 0.16 6.21 -51.93 -0.32 -0.16 16 28 H 0.10 2.41 6.07 -51.93 -0.32 2.09 16 29 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 30 H 0.27 6.75 8.31 -40.82 -0.34 6.41 16 31 H 0.41 6.58 8.16 -34.47 -0.28 6.30 16 32 H 0.21 3.18 8.06 -52.49 -0.42 2.75 16 33 H 0.12 1.78 4.41 -52.48 -0.23 1.55 16 34 H 0.14 1.17 8.06 -52.49 -0.42 0.75 16 35 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16 36 H 0.14 0.83 8.06 -52.48 -0.42 0.41 16 37 H 0.14 1.51 8.03 -52.49 -0.42 1.09 16 LS Contribution 324.74 15.07 4.89 4.89 Total: -1.00 -30.89 324.74 -7.25 -38.15 By element: Atomic # 1 Polarization: 10.52 SS G_CDS: -3.62 Total: 6.90 kcal Atomic # 6 Polarization: -21.34 SS G_CDS: -2.90 Total: -24.24 kcal Atomic # 7 Polarization: -52.25 SS G_CDS: 1.72 Total: -50.53 kcal Atomic # 8 Polarization: -36.24 SS G_CDS: -1.80 Total: -38.04 kcal Atomic # 14 Polarization: 19.85 SS G_CDS: -5.02 Total: 14.83 kcal Atomic # 16 Polarization: 48.57 SS G_CDS: -0.53 Total: 48.04 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -30.89 -7.25 -38.15 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599226768.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.219 kcal (2) G-P(sol) polarization free energy of solvation -30.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.148 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds