Wall clock time and date at job start Fri Apr 10 2020 18:25:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.47286 * 2 1 4 4 C 1.50700 * 109.47307 * 239.99347 * 2 1 3 5 5 H 1.07998 * 120.00386 * 240.00328 * 4 2 1 6 6 C 1.37882 * 119.99716 * 60.00777 * 4 2 1 7 7 N 1.31516 * 119.99590 * 359.97438 * 6 4 2 8 8 Si 1.86796 * 119.99885 * 179.97438 * 6 4 2 9 9 H 1.48508 * 109.47128 * 59.99873 * 8 6 4 10 10 H 1.48504 * 109.46887 * 179.97438 * 8 6 4 11 11 H 1.48492 * 109.47338 * 299.99368 * 8 6 4 12 12 N 1.46507 * 109.46981 * 120.00002 * 2 1 3 13 13 S 1.65603 * 119.99662 * 265.00120 * 12 2 1 14 14 O 1.42098 * 106.40442 * 311.45822 * 13 12 2 15 15 O 1.42103 * 106.39998 * 178.53789 * 13 12 2 16 16 C 1.76203 * 107.21852 * 64.99834 * 13 12 2 17 17 C 1.35374 * 126.97221 * 270.03839 * 16 13 12 18 18 N 1.33776 * 106.53371 * 179.97438 * 17 16 13 19 19 N 1.28607 * 109.06277 * 0.02562 * 18 17 16 20 20 N 1.28734 * 110.23333 * 359.97438 * 19 18 17 21 21 C 1.40254 * 125.93931 * 179.97438 * 20 19 18 22 22 C 1.38818 * 120.06164 * 144.75155 * 21 20 19 23 23 C 1.38123 * 119.93558 * 179.67947 * 22 21 20 24 24 C 1.38282 * 120.05971 * 0.62073 * 23 22 21 25 25 C 1.38272 * 120.13058 * 359.67698 * 24 23 22 26 26 C 1.38121 * 120.06991 * 0.02562 * 25 24 23 27 27 H 1.08998 * 109.46891 * 300.00380 * 1 2 3 28 28 H 1.08997 * 109.46926 * 60.00058 * 1 2 3 29 29 H 1.08997 * 109.47286 * 179.97438 * 1 2 3 30 30 H 0.97000 * 119.99387 * 180.02562 * 7 6 4 31 31 H 0.96998 * 120.00143 * 84.99668 * 12 2 1 32 32 H 1.07998 * 126.73267 * 359.94525 * 17 16 13 33 33 H 1.08003 * 120.03262 * 359.97438 * 22 21 20 34 34 H 1.07993 * 119.97221 * 180.34248 * 23 22 21 35 35 H 1.08002 * 119.93332 * 179.70607 * 24 23 22 36 36 H 1.08007 * 119.96699 * 180.02562 * 25 24 23 37 37 H 1.08001 * 120.03980 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1312 6 6 1.6994 -0.2395 -2.4827 7 7 0.9430 0.8296 -2.6034 8 14 2.3227 -1.1197 -4.0078 9 1 1.8281 -2.5201 -4.0080 10 1 1.8272 -0.4201 -5.2204 11 1 3.8076 -1.1192 -4.0076 12 7 2.0183 -0.6906 1.1962 13 16 2.4121 0.1772 2.5505 14 8 3.2436 1.2443 2.1157 15 8 2.8122 -0.7697 3.5316 16 6 0.9273 0.9148 3.1474 17 6 0.4276 2.1268 2.8099 18 7 -0.7095 2.2751 3.4989 19 7 -0.9048 1.2266 4.2177 20 7 0.0502 0.3815 4.0411 21 6 0.1668 -0.8705 4.6623 22 6 0.7106 -1.9430 3.9687 23 6 0.8303 -3.1732 4.5852 24 6 0.3973 -3.3402 5.8878 25 6 -0.1504 -2.2753 6.5791 26 6 -0.2671 -1.0412 5.9699 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 0.7084 1.1608 -3.4844 31 1 2.1109 -1.6562 1.1950 32 1 0.8618 2.8353 2.1201 33 1 1.0441 -1.8144 2.9495 34 1 1.2583 -4.0065 4.0479 35 1 0.4875 -4.3042 6.3663 36 1 -0.4874 -2.4086 7.5966 37 1 -0.6946 -0.2097 6.5105 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599226768.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:34 Heat of formation + Delta-G solvation = 48.075077 kcal Electronic energy + Delta-G solvation = -25704.753107 eV Core-core repulsion = 21997.415550 eV Total energy + Delta-G solvation = -3707.337558 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 322.089 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -44.81103 -40.41782 -38.55382 -37.45146 -37.19222 -35.87445 -34.22351 -32.98701 -31.97735 -31.03587 -30.27616 -27.28602 -25.64801 -25.01145 -23.43796 -22.95140 -22.82635 -20.81940 -20.04307 -19.32531 -18.31952 -17.98443 -17.84132 -17.43260 -17.08104 -16.55699 -16.15060 -15.72332 -15.49078 -15.11722 -14.71800 -14.57988 -14.28413 -14.08724 -14.01239 -13.66303 -13.45656 -13.24844 -13.16045 -13.11440 -12.81577 -12.61624 -12.55784 -12.41970 -12.33902 -12.27104 -12.03197 -11.94956 -11.33741 -11.11974 -10.63375 -10.26339 -10.05603 -9.83542 -8.14617 -6.29009 -0.96135 -0.72322 0.26375 0.36789 0.88033 1.00794 1.48888 1.50046 1.57068 1.85490 2.40451 2.46343 2.58530 2.88129 3.16295 3.30256 3.49847 3.66058 3.79560 3.92177 4.13293 4.27164 4.35700 4.39027 4.43407 4.65587 4.78337 4.86373 4.88320 5.03590 5.14077 5.15856 5.36233 5.39485 5.53484 5.68040 5.82907 5.96133 6.01028 6.30612 6.79611 6.85408 7.40724 8.90731 Molecular weight = 322.09amu Principal moments of inertia in cm(-1) A = 0.016848 B = 0.004725 C = 0.004303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1661.474536 B = 5924.401722 C = 6505.360145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.272 3.728 3 H 0.031 0.969 4 C -0.540 4.540 5 H 0.073 0.927 6 C 0.019 3.981 7 N -0.913 5.913 8 Si 0.962 3.038 9 H -0.268 1.268 10 H -0.287 1.287 11 H -0.272 1.272 12 N -1.087 6.087 13 S 2.729 3.271 14 O -0.965 6.965 15 O -0.955 6.955 16 C -0.598 4.598 17 C 0.070 3.930 18 N -0.291 5.291 19 N -0.051 5.051 20 N -0.164 5.164 21 C 0.050 3.950 22 C -0.091 4.091 23 C -0.105 4.105 24 C -0.083 4.083 25 C -0.105 4.105 26 C -0.097 4.097 27 H 0.018 0.982 28 H 0.074 0.926 29 H 0.040 0.960 30 H 0.266 0.734 31 H 0.423 0.577 32 H 0.223 0.777 33 H 0.112 0.888 34 H 0.165 0.835 35 H 0.176 0.824 36 H 0.175 0.825 37 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.427 -9.233 15.932 18.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.167 3.833 3 H 0.049 0.951 4 C -0.580 4.580 5 H 0.091 0.909 6 C -0.182 4.182 7 N -0.551 5.551 8 Si 0.788 3.212 9 H -0.192 1.192 10 H -0.213 1.213 11 H -0.198 1.198 12 N -0.851 5.851 13 S 2.809 3.191 14 O -0.954 6.954 15 O -0.944 6.944 16 C -0.806 4.806 17 C -0.090 4.090 18 N -0.153 5.153 19 N -0.031 5.031 20 N 0.044 4.956 21 C -0.039 4.039 22 C -0.112 4.112 23 C -0.123 4.123 24 C -0.101 4.101 25 C -0.123 4.123 26 C -0.117 4.117 27 H 0.037 0.963 28 H 0.092 0.908 29 H 0.059 0.941 30 H 0.075 0.925 31 H 0.261 0.739 32 H 0.239 0.761 33 H 0.130 0.870 34 H 0.182 0.818 35 H 0.194 0.806 36 H 0.192 0.808 37 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -2.102 -8.418 16.910 19.006 hybrid contribution 0.414 -0.046 -1.842 1.889 sum -1.688 -8.464 15.068 17.365 Atomic orbital electron populations 1.22129 0.98075 1.00113 1.00312 1.18423 0.90934 0.92256 0.81658 0.95119 1.21494 1.32331 1.13668 0.90459 0.90887 1.25674 0.94983 0.95636 1.01875 1.69968 1.36815 1.23652 1.24712 0.85541 0.78721 0.78744 0.78216 1.19247 1.21282 1.19751 1.55419 1.83409 1.19854 1.26449 1.01165 0.72100 0.73181 0.72630 1.93586 1.62047 1.57994 1.81759 1.93610 1.80573 1.60592 1.59654 1.35203 1.23034 1.09832 1.12578 1.24023 0.91673 0.94846 0.98474 1.75098 1.16177 1.15723 1.08333 1.78117 1.10377 0.95918 1.18697 1.44543 1.12531 1.13298 1.25247 1.18187 1.09856 0.80665 0.95227 1.21177 0.97027 0.92995 1.00013 1.21432 0.98690 0.95862 0.96322 1.21915 0.93987 1.00828 0.93358 1.21536 0.98451 0.90445 1.01860 1.21230 0.98813 1.00801 0.90846 0.96284 0.90775 0.94095 0.92479 0.73932 0.76083 0.87023 0.81789 0.80645 0.80785 0.84167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.55 9.29 71.98 0.67 -5.88 16 2 C 0.27 12.44 2.90 44.24 0.13 12.57 16 3 H 0.03 1.56 7.50 -2.39 -0.02 1.54 16 4 C -0.54 -26.80 8.76 25.60 0.22 -26.57 16 5 H 0.07 3.43 7.81 -2.91 -0.02 3.41 16 6 C 0.02 0.97 5.30 84.66 0.45 1.42 16 7 N -0.91 -48.97 11.32 21.45 0.24 -48.73 16 8 Si 0.96 40.50 29.54 68.60 2.03 42.53 16 9 H -0.27 -10.80 7.11 99.48 0.71 -10.09 16 10 H -0.29 -12.07 7.11 99.48 0.71 -11.36 16 11 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 12 N -1.09 -40.29 4.62 -172.51 -0.80 -41.09 16 13 S 2.73 98.72 4.95 -56.49 -0.28 98.44 16 14 O -0.96 -40.71 17.22 -128.00 -2.20 -42.91 16 15 O -0.95 -32.97 14.18 -128.00 -1.81 -34.79 16 16 C -0.60 -21.43 5.96 83.37 0.50 -20.93 16 17 C 0.07 2.53 10.96 83.73 0.92 3.45 16 18 N -0.29 -10.85 12.39 -58.24 -0.72 -11.58 16 19 N -0.05 -1.84 12.85 37.02 0.48 -1.36 16 20 N -0.16 -5.62 3.50 -184.57 -0.65 -6.27 16 21 C 0.05 1.45 6.01 38.07 0.23 1.68 16 22 C -0.09 -2.45 6.96 22.38 0.16 -2.29 16 23 C -0.10 -1.96 10.04 22.25 0.22 -1.74 16 24 C -0.08 -1.10 10.04 22.29 0.22 -0.88 16 25 C -0.10 -1.52 10.04 22.25 0.22 -1.30 16 26 C -0.10 -2.17 9.71 22.38 0.22 -1.95 16 27 H 0.02 0.77 6.21 -2.39 -0.01 0.75 16 28 H 0.07 3.71 6.07 -2.39 -0.01 3.70 16 29 H 0.04 1.72 8.14 -2.39 -0.02 1.71 16 30 H 0.27 13.68 8.31 -92.71 -0.77 12.91 16 31 H 0.42 13.39 8.16 -96.74 -0.79 12.60 16 32 H 0.22 7.04 8.06 -2.91 -0.02 7.02 16 33 H 0.11 3.16 4.41 -2.91 -0.01 3.15 16 34 H 0.16 2.17 8.06 -2.91 -0.02 2.15 16 35 H 0.18 0.89 8.06 -2.91 -0.02 0.86 16 36 H 0.17 1.19 8.06 -2.91 -0.02 1.17 16 37 H 0.14 2.92 8.03 -2.91 -0.02 2.90 16 Total: -1.00 -67.15 324.74 0.78 -66.37 By element: Atomic # 1 Polarization: 21.48 SS G_CDS: 0.34 Total: 21.82 kcal Atomic # 6 Polarization: -46.58 SS G_CDS: 4.16 Total: -42.42 kcal Atomic # 7 Polarization: -107.58 SS G_CDS: -1.45 Total: -109.02 kcal Atomic # 8 Polarization: -73.68 SS G_CDS: -4.02 Total: -77.70 kcal Atomic # 14 Polarization: 40.50 SS G_CDS: 2.03 Total: 42.53 kcal Atomic # 16 Polarization: 98.72 SS G_CDS: -0.28 Total: 98.44 kcal Total: -67.15 0.78 -66.37 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599226768.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.441 kcal (2) G-P(sol) polarization free energy of solvation -67.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.366 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds