Wall clock time and date at job start Fri Apr 10 2020 18:25:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30825 * 1 3 3 Si 1.86792 * 120.00156 * 2 1 4 4 H 1.48504 * 109.47403 * 270.00304 * 3 2 1 5 5 H 1.48504 * 109.47275 * 29.99925 * 3 2 1 6 6 H 1.48502 * 109.47577 * 149.99848 * 3 2 1 7 7 C 1.39947 * 119.99713 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99922 * 165.15078 * 7 2 1 9 9 C 1.41389 * 120.00133 * 345.14954 * 7 2 1 10 10 C 1.40731 * 120.24521 * 332.61056 * 9 7 2 11 11 C 1.37597 * 119.74595 * 179.97438 * 10 9 7 12 12 C 1.38659 * 120.24873 * 0.02562 * 11 10 9 13 13 C 1.38616 * 120.50096 * 359.68437 * 12 11 10 14 14 C 1.37633 * 120.24604 * 0.59797 * 13 12 11 15 15 S 1.76207 * 120.12935 * 179.70244 * 14 13 12 16 16 O 1.42101 * 106.39942 * 1.18403 * 15 14 13 17 17 O 1.42097 * 106.39776 * 228.26545 * 15 14 13 18 18 N 1.65603 * 107.21660 * 114.72436 * 15 14 13 19 19 C 1.47221 * 125.60787 * 90.00677 * 18 15 14 20 20 C 1.54520 * 105.47009 * 156.13570 * 19 18 15 21 21 H 1.08999 * 114.26280 * 159.22496 * 20 19 18 22 22 C 1.54723 * 108.37684 * 288.48468 * 20 19 18 23 23 N 1.47766 * 105.10188 * 143.64768 * 22 20 19 24 24 C 1.47457 * 108.45791 * 335.08059 * 23 22 20 25 25 C 1.53992 * 107.57866 * 2.20043 * 24 23 22 26 26 H 1.08997 * 113.12493 * 143.75383 * 25 24 23 27 27 C 1.46850 * 125.60703 * 269.99856 * 18 15 14 28 28 H 0.96999 * 120.00065 * 359.97438 * 1 2 3 29 29 H 1.07992 * 120.12826 * 359.95379 * 10 9 7 30 30 H 1.07997 * 119.87909 * 179.97438 * 11 10 9 31 31 H 1.08007 * 119.75203 * 179.97438 * 12 11 10 32 32 H 1.08002 * 119.87723 * 180.29821 * 13 12 11 33 33 H 1.08996 * 110.24976 * 37.13218 * 19 18 15 34 34 H 1.09000 * 110.31597 * 275.17333 * 19 18 15 35 35 H 1.08994 * 110.31442 * 24.74197 * 22 20 19 36 36 H 1.08994 * 110.31456 * 262.55366 * 22 20 19 37 37 H 1.00902 * 111.00194 * 212.88741 * 23 22 20 38 38 H 1.09001 * 109.83683 * 121.70782 * 24 23 22 39 39 H 1.09005 * 109.83474 * 242.69461 * 24 23 22 40 40 H 1.08998 * 109.79769 * 62.80051 * 27 18 15 41 41 H 1.09000 * 109.79277 * 301.95564 * 27 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6176 0.0000 4 1 2.4897 2.0464 -1.4001 5 1 1.4397 2.6526 0.7000 6 1 3.5398 1.4402 0.7001 7 6 2.0079 -1.2120 -0.0005 8 1 3.0609 -1.2276 -0.2403 9 6 1.3364 -2.4161 0.3127 10 6 0.2046 -2.3997 1.1490 11 6 -0.4414 -3.5776 1.4468 12 6 0.0191 -4.7776 0.9267 13 6 1.1293 -4.8050 0.0971 14 6 1.7945 -3.6397 -0.2095 15 16 3.2101 -3.6791 -1.2581 16 8 3.3896 -5.0363 -1.6390 17 8 4.2148 -2.9159 -0.6045 18 7 2.8199 -2.8533 -2.6395 19 6 3.0133 -1.4104 -2.8592 20 6 3.0953 -1.2343 -4.3921 21 1 2.8827 -0.2230 -4.7387 22 6 4.4449 -1.8142 -4.8782 23 7 4.1488 -2.4336 -6.1867 24 6 2.7184 -2.7902 -6.2214 25 6 2.0901 -2.3221 -4.8957 26 1 1.0723 -1.9498 -5.0123 27 6 2.2243 -3.4398 -3.8469 28 1 -0.4850 0.8400 0.0004 29 1 -0.1553 -1.4663 1.5558 30 1 -1.3099 -3.5675 2.0886 31 1 -0.4939 -5.6975 1.1659 32 1 1.4764 -5.7447 -0.3063 33 1 3.9400 -1.0785 -2.3912 34 1 2.1679 -0.8502 -2.4598 35 1 4.8082 -2.5657 -4.1773 36 1 5.1793 -1.0173 -4.9943 37 1 4.7277 -3.2453 -6.3418 38 1 2.2324 -2.2888 -7.0583 39 1 2.6088 -3.8701 -6.3215 40 1 1.2405 -3.8466 -3.6129 41 1 2.8696 -4.2302 -4.2302 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601342924.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:42 Heat of formation + Delta-G solvation = -45.795879 kcal Electronic energy + Delta-G solvation = -26674.998111 eV Core-core repulsion = 23067.130347 eV Total energy + Delta-G solvation = -3607.867764 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 322.114 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -39.90439 -37.63548 -36.37658 -34.96125 -34.88747 -33.95010 -30.36495 -30.27119 -29.66337 -29.55105 -26.19591 -25.49611 -23.03993 -21.67797 -21.19190 -20.75612 -19.75925 -18.29352 -17.72919 -17.13720 -16.43709 -16.02498 -15.67380 -15.42470 -14.85864 -14.41596 -13.77076 -13.71668 -13.53359 -13.23488 -13.14143 -12.81646 -12.59245 -12.41053 -12.21800 -11.97997 -11.69247 -11.61509 -11.32521 -11.27054 -11.20402 -11.19205 -11.00476 -10.78363 -10.65797 -10.62055 -10.49968 -10.43531 -9.92870 -9.48446 -9.27975 -8.46633 -8.32190 -8.05070 -7.66639 -7.13571 -4.82692 1.40627 2.30281 2.66915 2.91771 2.97694 3.06437 3.70563 3.84008 4.26308 4.31821 4.40535 4.64706 4.77404 4.88576 5.19238 5.31864 5.32740 5.42678 5.51962 5.64092 5.65429 5.85649 5.88186 5.98295 6.00901 6.18028 6.19523 6.22144 6.28380 6.36274 6.49364 6.63254 6.73865 6.81467 6.87512 6.98378 7.11889 7.29372 7.33335 7.47257 7.63582 7.77007 7.89040 8.29473 8.44555 8.60955 9.79614 Molecular weight = 322.11amu Principal moments of inertia in cm(-1) A = 0.011810 B = 0.007121 C = 0.005329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2370.283711 B = 3931.316533 C = 5252.924755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.773 5.773 2 C 0.082 3.918 3 Si 0.902 3.098 4 H -0.260 1.260 5 H -0.273 1.273 6 H -0.251 1.251 7 C -0.471 4.471 8 H 0.113 0.887 9 C 0.191 3.809 10 C -0.159 4.159 11 C -0.076 4.076 12 C -0.250 4.250 13 C -0.002 4.002 14 C -0.779 4.779 15 S 2.719 3.281 16 O -0.994 6.994 17 O -0.970 6.970 18 N -1.003 6.003 19 C 0.127 3.873 20 C -0.105 4.105 21 H 0.107 0.893 22 C 0.049 3.951 23 N -0.684 5.684 24 C 0.054 3.946 25 C -0.115 4.115 26 H 0.102 0.898 27 C 0.132 3.868 28 H 0.288 0.712 29 H 0.123 0.877 30 H 0.094 0.906 31 H 0.095 0.905 32 H 0.107 0.893 33 H 0.078 0.922 34 H 0.086 0.914 35 H 0.050 0.950 36 H 0.078 0.922 37 H 0.337 0.663 38 H 0.075 0.925 39 H 0.053 0.947 40 H 0.064 0.936 41 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.569 0.518 -8.430 8.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.396 5.396 2 C -0.140 4.140 3 Si 0.725 3.275 4 H -0.184 1.184 5 H -0.197 1.197 6 H -0.175 1.175 7 C -0.498 4.498 8 H 0.130 0.870 9 C 0.186 3.814 10 C -0.179 4.179 11 C -0.095 4.095 12 C -0.270 4.270 13 C -0.022 4.022 14 C -0.874 4.874 15 S 2.819 3.181 16 O -0.986 6.986 17 O -0.961 6.961 18 N -0.839 5.839 19 C 0.002 3.998 20 C -0.126 4.126 21 H 0.125 0.875 22 C -0.080 4.080 23 N -0.313 5.313 24 C -0.076 4.076 25 C -0.136 4.136 26 H 0.120 0.880 27 C 0.006 3.994 28 H 0.099 0.901 29 H 0.141 0.859 30 H 0.112 0.888 31 H 0.113 0.887 32 H 0.125 0.875 33 H 0.096 0.904 34 H 0.104 0.896 35 H 0.068 0.932 36 H 0.096 0.904 37 H 0.152 0.848 38 H 0.093 0.907 39 H 0.072 0.928 40 H 0.082 0.918 41 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 2.172 0.833 -8.589 8.899 hybrid contribution -0.781 0.061 0.949 1.231 sum 1.391 0.894 -7.640 7.817 Atomic orbital electron populations 1.69810 1.07812 1.30215 1.31745 1.26001 0.94728 1.01755 0.91516 0.86360 0.81251 0.79683 0.80227 1.18416 1.19733 1.17470 1.20452 0.98877 0.90785 1.39735 0.86976 1.17002 0.89415 0.89723 0.85219 1.21485 0.98781 0.96890 1.00724 1.20900 0.97556 0.93450 0.97606 1.20489 1.01552 0.96748 1.08234 1.20232 0.92952 0.95259 0.93787 1.29832 1.28886 1.00588 1.28112 1.00528 0.74547 0.71282 0.71719 1.93434 1.86853 1.34864 1.83402 1.93475 1.57193 1.71698 1.73687 1.58441 1.78905 1.17982 1.28550 1.21986 1.02931 0.81095 0.93803 1.23457 0.94292 0.99046 0.95778 0.87472 1.22865 0.97273 0.98657 0.89199 1.61955 1.04526 1.32472 1.32339 1.22579 0.88896 0.99212 0.96902 1.23268 1.00314 0.95679 0.94291 0.87967 1.21511 0.98030 0.95016 0.84813 0.90130 0.85946 0.88819 0.88714 0.87543 0.90353 0.89576 0.93196 0.90380 0.84795 0.90677 0.92805 0.91790 0.92127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -17.60 10.98 55.55 0.61 -16.99 16 2 C 0.08 1.83 4.85 -17.34 -0.08 1.74 16 3 Si 0.90 16.91 29.58 -169.99 -5.03 11.88 16 4 H -0.26 -4.58 7.11 56.52 0.40 -4.18 16 5 H -0.27 -4.99 7.11 56.52 0.40 -4.59 16 6 H -0.25 -4.86 7.11 56.52 0.40 -4.46 16 7 C -0.47 -11.34 6.10 -37.74 -0.23 -11.57 16 8 H 0.11 2.72 4.60 -52.49 -0.24 2.48 16 9 C 0.19 4.80 5.55 -106.82 -0.59 4.21 16 10 C -0.16 -3.89 8.67 -38.87 -0.34 -4.23 16 11 C -0.08 -1.71 10.02 -39.66 -0.40 -2.10 16 12 C -0.25 -5.49 10.05 -39.29 -0.39 -5.89 16 13 C 0.00 -0.05 9.53 -39.66 -0.38 -0.43 16 14 C -0.78 -18.70 5.96 -38.87 -0.23 -18.93 16 15 S 2.72 60.09 5.29 -107.50 -0.57 59.52 16 16 O -0.99 -22.83 16.55 -57.17 -0.95 -23.78 16 17 O -0.97 -23.36 15.00 -57.17 -0.86 -24.22 16 18 N -1.00 -18.60 3.18 -112.20 -0.36 -18.96 16 19 C 0.13 2.18 4.61 -2.85 -0.01 2.17 16 20 C -0.11 -1.44 4.46 -87.06 -0.39 -1.83 16 21 H 0.11 1.32 8.14 -51.93 -0.42 0.90 16 22 C 0.05 0.64 6.61 -2.44 -0.02 0.62 16 23 N -0.68 -8.10 7.40 -111.14 -0.82 -8.92 16 24 C 0.05 0.60 6.88 -3.00 -0.02 0.58 16 25 C -0.11 -1.49 4.14 -87.80 -0.36 -1.86 16 26 H 0.10 1.24 8.14 -51.93 -0.42 0.82 16 27 C 0.13 2.07 5.96 -3.40 -0.02 2.05 16 28 H 0.29 5.92 8.30 -40.82 -0.34 5.58 16 29 H 0.12 3.01 6.27 -52.49 -0.33 2.68 16 30 H 0.09 1.82 8.06 -52.49 -0.42 1.40 16 31 H 0.09 1.81 8.06 -52.48 -0.42 1.39 16 32 H 0.11 2.27 7.32 -52.49 -0.38 1.88 16 33 H 0.08 1.35 7.62 -51.93 -0.40 0.96 16 34 H 0.09 1.60 6.55 -51.93 -0.34 1.26 16 35 H 0.05 0.72 7.26 -51.93 -0.38 0.34 16 36 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.34 3.56 8.91 -39.29 -0.35 3.21 16 38 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.05 0.55 7.62 -51.93 -0.40 0.16 16 40 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 41 H 0.06 0.91 7.41 -51.93 -0.38 0.53 16 LS Contribution 331.36 15.07 4.99 4.99 Total: -1.00 -28.39 331.36 -11.74 -40.12 By element: Atomic # 1 Polarization: 17.11 SS G_CDS: -5.29 Total: 11.82 kcal Atomic # 6 Polarization: -32.00 SS G_CDS: -3.47 Total: -35.47 kcal Atomic # 7 Polarization: -44.30 SS G_CDS: -0.57 Total: -44.87 kcal Atomic # 8 Polarization: -46.19 SS G_CDS: -1.80 Total: -47.99 kcal Atomic # 14 Polarization: 16.91 SS G_CDS: -5.03 Total: 11.88 kcal Atomic # 16 Polarization: 60.09 SS G_CDS: -0.57 Total: 59.52 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -28.39 -11.74 -40.12 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601342924.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.674 kcal (2) G-P(sol) polarization free energy of solvation -28.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds